Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real [:1:1-1:33:writable] Error: Class GC_set_max_heap_size not found in scope (looking for a function or record). Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0003463/0.0003463, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0003926/0.0003926, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.2895/0.2895, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.01899/0.01899, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Bodylight.Chemical.Examples.TwoConcentrationCompartments,startTime=0,stopTime=20,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Bodylight.Chemical.Examples.TwoConcentrationCompartments,startTime=0,stopTime=20,tolerance=1e-06,numberOfIntervals=2500,outputFormat="empty",variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.TwoConcentrationCompartments",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 5.01e-07/5.01e-07, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 2.931e-05/2.981e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.TwoConcentrationCompartments): time 0.009821/0.009851, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.0126/0.02246, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0005997/0.02306, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.0004273/0.02348, allocations: 0 / 0, free: 0 / 0 [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Hydraulic.mo:1482:17-1484:29:writable] Warning: In relation resistor.Resistance == 0.0, == on Real operands is deprecated in non-function contexts. Notification: Performance of NFTyping.typeBindings: time 0.003248/0.02673, allocations: 0 / 0, free: 0 / 0 [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.TwoConcentrationCompartments.substance1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. Notification: Performance of NFTyping.typeClassSections: time 0.002627/0.02936, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.009463/0.03882, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.0003278/0.03915, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.006005/0.04515, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.006719/0.05187, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 0.001409/0.05328, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 0.0007473/0.05403, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 0.001475/0.0555, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.002055/0.05756, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.005251/0.06281, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 0.0004248/0.06323, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 2.525e-06/0.06324, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 2.226e-05/0.06326, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 164 * Number of variables: 164 Notification: Performance of Generate backend data structure: time 0.02317/0.08643, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 0.0001667/0.08659, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002514/0.08911, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.005195/0.0943, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0009163/0.09522, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 0.001407/0.09663, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.01057/0.1072, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 6.391e-05/0.1073, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0007713/0.108, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.627e-05/0.1081, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.006598/0.1146, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.04894/0.1636, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.007246/0.1708, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.006632/0.1775, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 0.0002449/0.1777, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0093/0.187, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=123): time 2.33e-05/0.187, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=123): time 0.02426/0.2113, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 8.652e-05/0.2114, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001992/0.2134, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 0.001049/0.2144, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 0.0007784/0.2152, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.001581/0.2168, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.003998/0.2208, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 0.0003095/0.2211, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.006788/0.2279, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.007336/0.2352, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.02146/0.2567, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.163e-05/0.2567, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=237) (initialization): time 0.01963/0.2763, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 7.446e-05/0.2764, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.812e-05/0.2764, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 4.071e-05/0.2765, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.1158/0.3923, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.988e-05/0.3923, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00519/0.3975, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.001156/0.3987, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 1 variables: inertia.q_in.q:VARIABLE(flow=true start = advectionStream.SolutionFlow unit = \"m3/s\" fixed = true nominal = 1.6666666666666667e-8 ) \"Volume flow\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 6 * Number of states: 0 () * Number of discrete variables: 5 (pulse.count,$PRE.pulse.count,pulse.T_start,$PRE.pulse.T_start,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (236): * Single equations (assignments): 235 * Array equations: 0 * Algorithm blocks: 1 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.002679/0.4013, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 0.002014/0.4034, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.01642/0.4198, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.945e-05/0.4198, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 1.685e-05/0.4198, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.242e-05/0.4198, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0127/0.4325, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.5e-05/0.4325, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.1119/0.5445, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 2.076e-05/0.5445, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.001784/0.5463, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.708e-05/0.5463, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.296e-06/0.5463, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.02201/0.5683, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 0.004363/0.5727, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.001339/0.574, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.004185/0.5782, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.003677/0.5819, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0008849/0.5828, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 0.0009938/0.5837, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 2.843e-05/0.5838, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.004301/0.5881, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 103 (substance.state,substance1.state,advectionStream.c[2],advectionStream.c[3],advectionStream.c[4],advectionStream.c[5],advectionStream.c[6],advectionStream.c[7],advectionStream.c[8],advectionStream.c[9],advectionStream.c[10],advectionStream.c[11],advectionStream.c[12],advectionStream.c[13],advectionStream.c[14],advectionStream.c[15],advectionStream.c[16],advectionStream.c[17],advectionStream.c[18],advectionStream.c[19],advectionStream.c[20],advectionStream.c[21],advectionStream.c[22],advectionStream.c[23],advectionStream.c[24],advectionStream.c[25],advectionStream.c[26],advectionStream.c[27],advectionStream.c[28],advectionStream.c[29],advectionStream.c[30],advectionStream.c[31],advectionStream.c[32],advectionStream.c[33],advectionStream.c[34],advectionStream.c[35],advectionStream.c[36],advectionStream.c[37],advectionStream.c[38],advectionStream.c[39],advectionStream.c[40],advectionStream.c[41],advectionStream.c[42],advectionStream.c[43],advectionStream.c[44],advectionStream.c[45],advectionStream.c[46],advectionStream.c[47],advectionStream.c[48],advectionStream.c[49],advectionStream.c[50],advectionStream.c[51],advectionStream.c[52],advectionStream.c[53],advectionStream.c[54],advectionStream.c[55],advectionStream.c[56],advectionStream.c[57],advectionStream.c[58],advectionStream.c[59],advectionStream.c[60],advectionStream.c[61],advectionStream.c[62],advectionStream.c[63],advectionStream.c[64],advectionStream.c[65],advectionStream.c[66],advectionStream.c[67],advectionStream.c[68],advectionStream.c[69],advectionStream.c[70],advectionStream.c[71],advectionStream.c[72],advectionStream.c[73],advectionStream.c[74],advectionStream.c[75],advectionStream.c[76],advectionStream.c[77],advectionStream.c[78],advectionStream.c[79],advectionStream.c[80],advectionStream.c[81],advectionStream.c[82],advectionStream.c[83],advectionStream.c[84],advectionStream.c[85],advectionStream.c[86],advectionStream.c[87],advectionStream.c[88],advectionStream.c[89],advectionStream.c[90],advectionStream.c[91],advectionStream.c[92],advectionStream.c[93],advectionStream.c[94],advectionStream.c[95],advectionStream.c[96],advectionStream.c[97],advectionStream.c[98],advectionStream.c[99],elasticVessel.volume,elasticVessel1.volume,inertia.q_in.q) * Number of discrete variables: 3 ($whenCondition1,pulse.T_start,pulse.count) * Number of discrete states: 1 (pulse.count) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (123): * Single equations (assignments): 121 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.001395/0.5895, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.01435/0.6038, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 4.879e-06/0.6038, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.007152/0.611, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.005071/0.6161, allocations: 0 / 0, free: 0 / 0 Error: Error parsing unit kcal: Unit not found Error: Error parsing unit kcal/mol: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.02076/0.6368, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009307/0.6377, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.004942/0.6427, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.005995/0.6487, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 5.99e-05/0.6487, allocations: 0 / 0, free: 0 / 0 Error: Error parsing unit kcal: Unit not found Error: Error parsing unit kcal/mol: Unit not found Notification: Performance of Templates: time 0.00738/0.6561, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 899] [Calling sys.exit(0), Time elapsed: 2.062456491868943]