Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real [:1:1-1:33:writable] Error: Class GC_set_max_heap_size not found in scope (looking for a function or record). Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0004785/0.0004785, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00034/0.00034, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.2953/0.2953, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.7608/0.7608, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites,startTime=0,stopTime=28800,tolerance=1e-09,numberOfIntervals=28800,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites",simflags="-alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 1.503e-06/1.503e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 2.816e-05/2.967e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_metabolites): time 0.01064/0.01067, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.002344/0.01301, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 0.0003706/0.01338, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 0.0003528/0.01374, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 0.0008323/0.01457, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 0.0004905/0.01506, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 0.0008359/0.0159, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 0.0003263/0.01622, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 0.0007112/0.01693, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 0.0004463/0.01738, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 0.0001126/0.01749, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 0.0001211/0.01761, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 0.000135/0.01775, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 0.0003919/0.01814, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 0.0007652/0.01891, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 6.687e-05/0.01897, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 3.296e-06/0.01898, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 1.242e-05/0.01899, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 105 * Number of variables: 105 Notification: Performance of Generate backend data structure: time 0.002037/0.02103, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 7.987e-05/0.02111, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004136/0.02152, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 0.000912/0.02243, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.036e-05/0.02252, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001801/0.0227, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 0.00145/0.02415, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 6.917e-05/0.02422, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001163/0.02434, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.608e-05/0.02435, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001179/0.02553, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003269/0.0288, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.001106/0.02991, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 0.0005911/0.0305, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 2.448e-05/0.03052, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001055/0.03158, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=74): time 3.646e-05/0.03162, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=79): time 0.006826/0.03844, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001406/0.03858, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000625/0.03921, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 0.0001564/0.03936, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 0.0002087/0.03957, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 0.0004078/0.03998, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005214/0.0405, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 0.0002361/0.04074, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 0.0007975/0.04153, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009577/0.04249, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 0.002374/0.04487, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.99e-05/0.04489, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=113) (initialization): time 0.003247/0.04813, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001086/0.04824, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.375e-05/0.04827, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 3.704e-05/0.0483, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001063/0.04937, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.937e-05/0.0494, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006057/0.05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001624/0.05016, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 22 variables: periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real acetaminophen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluconic_acid.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real sulfate_conjugates.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real NAPQI.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gluthatione_conjugation.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real acetaminophen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real acetaminophen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluconic_acid.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real sulfate_conjugates.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real NAPQI.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real gluthatione_conjugation.rising:DISCRETE(fixed = true protected = true ) type: Boolean NAPQI.rising:DISCRETE(fixed = true protected = true ) type: Boolean sulfate_conjugates.rising:DISCRETE(fixed = true protected = true ) type: Boolean gluconic_acid.rising:DISCRETE(fixed = true protected = true ) type: Boolean acetaminophen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 22 * Number of states: 0 () * Number of discrete variables: 45 ($PRE.acetaminophen.Cmin,acetaminophen.Cmin,$PRE.acetaminophen.Cmax,acetaminophen.Cmax,$PRE.gluconic_acid.Cmin,gluconic_acid.Cmin,$PRE.gluconic_acid.Cmax,gluconic_acid.Cmax,$PRE.sulfate_conjugates.Cmin,sulfate_conjugates.Cmin,$PRE.sulfate_conjugates.Cmax,sulfate_conjugates.Cmax,$PRE.NAPQI.Cmin,NAPQI.Cmin,$PRE.NAPQI.Cmax,NAPQI.Cmax,$PRE.gluthatione_conjugation.Cmin,gluthatione_conjugation.Cmin,$PRE.gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmax,$PRE.gluthatione_conjugation.rising,$PRE.NAPQI.rising,$PRE.sulfate_conjugates.rising,$PRE.gluconic_acid.rising,$PRE.acetaminophen.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,gluthatione_conjugation.rising,NAPQI.rising,sulfate_conjugates.rising,gluconic_acid.rising,acetaminophen.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (107): * Single equations (assignments): 101 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008479/0.05101, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003595/0.05137, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002105/0.05158, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.08e-05/0.05159, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 1.021e-05/0.0516, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.758e-05/0.05162, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004629/0.05625, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.001e-05/0.05626, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008594/0.05712, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 1.412e-05/0.05713, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001505/0.05728, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.01e-05/0.05729, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.885e-06/0.0573, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00365/0.06095, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 0.0003955/0.06134, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003063/0.06165, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005004/0.06215, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004452/0.06259, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001347/0.06273, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 0.0003392/0.06307, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 7.214e-06/0.06308, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.001863/0.06494, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 16 (periodicDose.TotalCumulativeMass,periodicDose.variableDose.TotalCumulativeMass,acetaminophen.C,acetaminophen.AUC,gluconic_acid.C,gluconic_acid.AUC,sulfate_conjugates.C,sulfate_conjugates.AUC,NAPQI.C,NAPQI.AUC,gluthatione_conjugation.C,gluthatione_conjugation.AUC,kidney.MExc,kidney1.MExc,kidney11.MExc,kidney2.MExc) * Number of discrete variables: 28 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,periodicDose.pulse.T_start,periodicDose.pulse.count,acetaminophen.Cmax,acetaminophen.Cmin,acetaminophen.rising,gluconic_acid.Cmax,gluconic_acid.Cmin,gluconic_acid.rising,sulfate_conjugates.Cmax,sulfate_conjugates.Cmin,sulfate_conjugates.rising,NAPQI.Cmax,NAPQI.Cmin,NAPQI.rising,gluthatione_conjugation.Cmax,gluthatione_conjugation.Cmin,gluthatione_conjugation.rising) * Number of discrete states: 26 (periodicDose.pulse.count,NAPQI.Cmin,$whenCondition5,NAPQI.Cmax,$whenCondition4,NAPQI.rising,gluconic_acid.Cmin,$whenCondition9,gluconic_acid.Cmax,$whenCondition8,gluconic_acid.rising,sulfate_conjugates.Cmin,$whenCondition7,sulfate_conjugates.Cmax,$whenCondition6,sulfate_conjugates.rising,gluthatione_conjugation.Cmin,$whenCondition3,gluthatione_conjugation.Cmax,$whenCondition2,gluthatione_conjugation.rising,acetaminophen.Cmin,$whenCondition11,acetaminophen.Cmax,$whenCondition10,acetaminophen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (64): * Single equations (assignments): 57 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004213/0.06536, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 0.002185/0.06754, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 6.332e-06/0.06755, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 0.001028/0.06858, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001985/0.07056, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004695/0.07526, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003195/0.07558, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 0.0004179/0.076, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003492/0.07634, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 0.0001649/0.07651, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.002158/0.07867, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 2.2766275531612337]