Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001859/0.001859, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002004/0.002004, allocations: 169.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.59/1.59, allocations: 177.1 MB / 202.8 MB, free: 5.762 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.452/3.452, allocations: 274 MB / 0.5207 GB, free: 14.9 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body")
translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.423e-06/1.423e-06, allocations: 0 / 0.7564 GB, free: 9.824 MB / 0.5887 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.655e-05/2.797e-05, allocations: 2.281 kB / 0.7564 GB, free: 9.82 MB / 0.5887 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.01329/0.01331, allocations: 10.25 MB / 0.7664 GB, free: 15.59 MB / 0.6043 GB
Notification: Performance of NFInst.instExpressions: time 0.005972/0.01928, allocations: 2.476 MB / 0.7688 GB, free: 13.12 MB / 0.6043 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0012/0.02048, allocations: 27.94 kB / 0.7688 GB, free: 13.09 MB / 0.6043 GB
Notification: Performance of NFTyping.typeComponents: time 0.0007214/0.02121, allocations: 297 kB / 0.7691 GB, free: 12.8 MB / 0.6043 GB
Notification: Performance of NFTyping.typeBindings: time 0.002074/0.02328, allocations: 0.7822 MB / 0.7699 GB, free: 12.01 MB / 0.6043 GB
Notification: Performance of NFTyping.typeClassSections: time 0.001466/0.02475, allocations: 0.5922 MB / 0.7704 GB, free: 11.42 MB / 0.6043 GB
Notification: Performance of NFFlatten.flatten: time 0.003824/0.02857, allocations: 2.882 MB / 0.7733 GB, free: 8.527 MB / 0.6043 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.004185/0.03276, allocations: 2.993 MB / 0.7762 GB, free: 5.477 MB / 0.6043 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.005112/0.03787, allocations: 2.567 MB / 0.7787 GB, free: 2.906 MB / 0.6043 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.00475/0.04262, allocations: 1.953 MB / 0.7806 GB, free: 0.9492 MB / 0.6043 GB
Notification: Performance of NFPackage.collectConstants: time 0.001176/0.04379, allocations: 428 kB / 0.781 GB, free: 0.5312 MB / 0.6043 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.00115/0.04494, allocations: 428 kB / 0.7814 GB, free: 116 kB / 0.6043 GB
Notification: Performance of NFScalarize.scalarize: time 0.001062/0.04601, allocations: 0.9271 MB / 0.7823 GB, free: 15.18 MB / 0.6199 GB
Notification: Performance of NFVerifyModel.verify: time 0.002448/0.04845, allocations: 1.294 MB / 0.7836 GB, free: 13.89 MB / 0.6199 GB
Notification: Performance of NFConvertDAE.convert: time 0.005344/0.0538, allocations: 3.756 MB / 0.7872 GB, free: 10.12 MB / 0.6199 GB
Notification: Performance of FrontEnd - DAE generated: time 6.663e-06/0.0538, allocations: 4 kB / 0.7873 GB, free: 10.12 MB / 0.6199 GB
Notification: Performance of FrontEnd: time 1.593e-06/0.05381, allocations: 3.938 kB / 0.7873 GB, free: 10.11 MB / 0.6199 GB
Notification: Performance of Transformations before backend: time 0.0001188/0.05392, allocations: 4 kB / 0.7873 GB, free: 10.11 MB / 0.6199 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 449
 * Number of variables: 449
Notification: Performance of Generate backend data structure: time 0.009235/0.06316, allocations: 2.811 MB / 0.79 GB, free: 7.203 MB / 0.6199 GB
Notification: Performance of prepare preOptimizeDAE: time 5.844e-05/0.06322, allocations: 15.97 kB / 0.79 GB, free: 7.188 MB / 0.6199 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006603/0.06388, allocations: 231.5 kB / 0.7902 GB, free: 6.961 MB / 0.6199 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00234/0.06622, allocations: 1.12 MB / 0.7913 GB, free: 5.812 MB / 0.6199 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001509/0.06637, allocations: 139.9 kB / 0.7915 GB, free: 5.676 MB / 0.6199 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005205/0.06689, allocations: 196.3 kB / 0.7917 GB, free: 5.484 MB / 0.6199 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00701/0.0739, allocations: 3.782 MB / 0.7953 GB, free: 1.57 MB / 0.6199 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.491e-05/0.07397, allocations: 15.89 kB / 0.7954 GB, free: 1.555 MB / 0.6199 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002816/0.07426, allocations: 72 kB / 0.7954 GB, free: 1.484 MB / 0.6199 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.48e-05/0.0743, allocations: 44 kB / 0.7955 GB, free: 1.441 MB / 0.6199 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.006939/0.08124, allocations: 3.503 MB / 0.7989 GB, free: 13.91 MB / 0.6355 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02671/0.1079, allocations: 7.706 MB / 0.8064 GB, free: 6.141 MB / 0.6355 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.005915/0.1139, allocations: 1.735 MB / 0.8081 GB, free: 4.371 MB / 0.6355 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.00408/0.1179, allocations: 1.255 MB / 0.8093 GB, free: 3.09 MB / 0.6355 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.0001529/0.1181, allocations: 25.98 kB / 0.8094 GB, free: 3.062 MB / 0.6355 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.005653/0.1238, allocations: 2.14 MB / 0.8115 GB, free: 0.832 MB / 0.6355 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.01119/0.1349, allocations: 1.769 MB / 0.8132 GB, free: 15.11 MB / 0.6512 GB
Notification: Performance of pre-optimization done (n=198): time 8.907e-06/0.135, allocations: 0 / 0.8132 GB, free: 15.11 MB / 0.6512 GB
Notification: Performance of matching and sorting (n=202): time 0.02633/0.1613, allocations: 7.923 MB / 0.8209 GB, free: 7.055 MB / 0.6512 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003891/0.1617, allocations: 409.8 kB / 0.8213 GB, free: 6.566 MB / 0.6512 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001911/0.1636, allocations: 0.9068 MB / 0.8222 GB, free: 5.637 MB / 0.6512 GB
Notification: Performance of collectPreVariables (initialization): time 0.0003293/0.1639, allocations: 77.69 kB / 0.8223 GB, free: 5.555 MB / 0.6512 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0009276/0.1648, allocations: 0.6934 MB / 0.8229 GB, free: 4.852 MB / 0.6512 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0009155/0.1658, allocations: 0.7205 MB / 0.8237 GB, free: 4.125 MB / 0.6512 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001178/0.1669, allocations: 0.5856 MB / 0.8242 GB, free: 3.535 MB / 0.6512 GB
Notification: Performance of setup shared object (initialization): time 0.000166/0.1671, allocations: 305.1 kB / 0.8245 GB, free: 3.234 MB / 0.6512 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.003226/0.1703, allocations: 1.563 MB / 0.826 GB, free: 1.609 MB / 0.6512 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003776/0.1741, allocations: 2.087 MB / 0.8281 GB, free: 15.24 MB / 0.6668 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1563/0.3304, allocations: 24.77 MB / 0.8523 GB, free: 6.344 MB / 0.6824 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.215e-05/0.3304, allocations: 4 kB / 0.8523 GB, free: 6.34 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=298) (initialization): time 0.01299/0.3434, allocations: 4.126 MB / 0.8563 GB, free: 2.094 MB / 0.6824 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002854/0.3437, allocations: 271.3 kB / 0.8566 GB, free: 1.773 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.149e-05/0.3437, allocations: 15.94 kB / 0.8566 GB, free: 1.758 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (initialization): time 5.387e-05/0.3438, allocations: 20 kB / 0.8566 GB, free: 1.738 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.3747/0.7185, allocations: 0.8239 MB / 0.8574 GB, free: 105.2 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.237e-05/0.7186, allocations: 31.66 kB / 0.8574 GB, free: 105.2 MB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00268/0.7212, allocations: 113.8 kB / 0.8575 GB, free: 105.2 MB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0004515/0.7217, allocations: 213.2 kB / 0.8577 GB, free: 105.2 MB / 0.6824 GB
Warning: Assuming fixed start value for the following 42 variables:
         venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         lumenCompartment.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 55
 * Number of states: 0 ()
 * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (289):
 * Single equations (assignments): 280
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.001317/0.723, allocations: 0.6369 MB / 0.8584 GB, free: 104.9 MB / 0.6824 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004427/0.7234, allocations: 160.2 kB / 0.8585 GB, free: 104.9 MB / 0.6824 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.006899/0.7303, allocations: 3.56 MB / 0.862 GB, free: 104 MB / 0.6824 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.194e-05/0.7304, allocations: 17.16 kB / 0.862 GB, free: 104 MB / 0.6824 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 8.827e-06/0.7304, allocations: 3.562 kB / 0.862 GB, free: 104 MB / 0.6824 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.722e-05/0.7304, allocations: 10.78 kB / 0.862 GB, free: 104 MB / 0.6824 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.008046/0.7384, allocations: 4.541 MB / 0.8665 GB, free: 102 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.424e-06/0.7384, allocations: 4.156 kB / 0.8665 GB, free: 102 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002656/0.7411, allocations: 454.2 kB / 0.8669 GB, free: 101.9 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.269e-05/0.7411, allocations: 6.062 kB / 0.8669 GB, free: 101.9 MB / 0.6824 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002372/0.7413, allocations: 115.4 kB / 0.867 GB, free: 101.9 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.009e-05/0.7414, allocations: 5.875 kB / 0.867 GB, free: 101.9 MB / 0.6824 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.509e-06/0.7414, allocations: 4.312 kB / 0.867 GB, free: 101.9 MB / 0.6824 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007931/0.7493, allocations: 4.731 MB / 0.8716 GB, free: 99.68 MB / 0.6824 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.00108/0.7504, allocations: 393.3 kB / 0.872 GB, free: 99.57 MB / 0.6824 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003796/0.7508, allocations: 64.5 kB / 0.8721 GB, free: 99.54 MB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001745/0.7525, allocations: 88.14 kB / 0.8722 GB, free: 99.52 MB / 0.6824 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004637/0.753, allocations: 166.4 kB / 0.8723 GB, free: 99.48 MB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002572/0.7532, allocations: 124.3 kB / 0.8724 GB, free: 99.46 MB / 0.6824 GB
Notification: Performance of sorting global known variables: time 0.000883/0.7541, allocations: 0.6558 MB / 0.8731 GB, free: 99.18 MB / 0.6824 GB
Notification: Performance of sort global known variables: time 6e-08/0.7541, allocations: 0 / 0.8731 GB, free: 99.18 MB / 0.6824 GB
Notification: Performance of remove unused functions: time 0.002145/0.7562, allocations: 0.6325 MB / 0.8737 GB, free: 99.12 MB / 0.6824 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count)
 * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (190):
 * Single equations (assignments): 176
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 10
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003294/0.7566, allocations: 201.7 kB / 0.8739 GB, free: 98.98 MB / 0.6824 GB
Notification: Performance of simCode: created initialization part: time 0.007004/0.7636, allocations: 3.642 MB / 0.8774 GB, free: 97 MB / 0.6824 GB
Notification: Performance of simCode: created event and clocks part: time 4.949e-06/0.7636, allocations: 1.281 kB / 0.8774 GB, free: 97 MB / 0.6824 GB
Notification: Performance of simCode: created simulation system equations: time 0.002699/0.7663, allocations: 1.601 MB / 0.879 GB, free: 96.17 MB / 0.6824 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002487/0.7688, allocations: 486.3 kB / 0.8795 GB, free: 96.03 MB / 0.6824 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.008923/0.7777, allocations: 5.402 MB / 0.8847 GB, free: 92.97 MB / 0.6824 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009332/0.7786, allocations: 0.7704 MB / 0.8855 GB, free: 92.79 MB / 0.6824 GB
Notification: Performance of simCode: alias equations: time 0.002715/0.7813, allocations: 497.4 kB / 0.886 GB, free: 92.76 MB / 0.6824 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001465/0.7828, allocations: 327.1 kB / 0.8863 GB, free: 92.73 MB / 0.6824 GB
Notification: Performance of SimCode: time 1.102e-06/0.7828, allocations: 5.094 kB / 0.8863 GB, free: 92.73 MB / 0.6824 GB
Notification: Performance of Templates: time 0.04852/0.8313, allocations: 41.1 MB / 0.9264 GB, free: 59.78 MB / 0.6824 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 11.106865661218762]