Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002034/0.002034, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002776/0.002776, allocations: 165.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.595/1.595, allocations: 177.1 MB / 202.8 MB, free: 5.707 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.458/3.458, allocations: 274 MB / 0.5207 GB, free: 14.95 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.734e-06/1.734e-06, allocations: 0 / 0.7563 GB, free: 9.969 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.642e-05/2.815e-05, allocations: 2.281 kB / 0.7563 GB, free: 9.965 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.008681/0.008709, allocations: 6.042 MB / 0.7622 GB, free: 3.957 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.004268/0.01298, allocations: 1.989 MB / 0.7641 GB, free: 1.969 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005587/0.01354, allocations: 23.94 kB / 0.7641 GB, free: 1.945 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0008117/0.01435, allocations: 281.7 kB / 0.7644 GB, free: 1.668 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.001015/0.01536, allocations: 468.1 kB / 0.7649 GB, free: 1.207 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.001257/0.01662, allocations: 0.5419 MB / 0.7654 GB, free: 0.6641 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.002645/0.01926, allocations: 1.797 MB / 0.7671 GB, free: 14.86 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005337/0.0198, allocations: 259.7 kB / 0.7674 GB, free: 14.6 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001325/0.02112, allocations: 0.9123 MB / 0.7683 GB, free: 13.68 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0008314/0.02196, allocations: 0.5179 MB / 0.7688 GB, free: 13.16 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0002595/0.02221, allocations: 171.9 kB / 0.769 GB, free: 13 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0005737/0.02279, allocations: 315.3 kB / 0.7693 GB, free: 12.69 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0003956/0.02318, allocations: 374.6 kB / 0.7696 GB, free: 12.32 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0006789/0.02386, allocations: 0.5145 MB / 0.7701 GB, free: 11.8 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.002714/0.02658, allocations: 2.205 MB / 0.7723 GB, free: 9.594 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 4.258e-06/0.02658, allocations: 0 / 0.7723 GB, free: 9.594 MB / 0.6043 GB Notification: Performance of FrontEnd: time 1.323e-06/0.02658, allocations: 0 / 0.7723 GB, free: 9.594 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 2.493e-05/0.02661, allocations: 0 / 0.7723 GB, free: 9.594 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.004059/0.03067, allocations: 2.205 MB / 0.7744 GB, free: 7.227 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 4.493e-05/0.03071, allocations: 19.97 kB / 0.7744 GB, free: 7.207 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007883/0.0315, allocations: 239.8 kB / 0.7747 GB, free: 6.973 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001197/0.0327, allocations: 0.7048 MB / 0.7754 GB, free: 6.227 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.352e-05/0.03278, allocations: 74.36 kB / 0.7754 GB, free: 6.156 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002044/0.03298, allocations: 108.3 kB / 0.7755 GB, free: 6.051 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003148/0.03613, allocations: 1.983 MB / 0.7775 GB, free: 3.945 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.53e-05/0.03619, allocations: 15.83 kB / 0.7775 GB, free: 3.93 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001042/0.03629, allocations: 47.94 kB / 0.7775 GB, free: 3.883 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.916e-05/0.03632, allocations: 27.98 kB / 0.7776 GB, free: 3.855 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00309/0.03941, allocations: 1.799 MB / 0.7793 GB, free: 1.961 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004773/0.04418, allocations: 2.45 MB / 0.7817 GB, free: 15.46 MB / 0.6199 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003537/0.04772, allocations: 1.926 MB / 0.7836 GB, free: 13.39 MB / 0.6199 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002135/0.04986, allocations: 1.427 MB / 0.785 GB, free: 11.86 MB / 0.6199 GB Notification: Performance of preOpt evalFunc (simulation): time 8.249e-05/0.04994, allocations: 23.98 kB / 0.785 GB, free: 11.83 MB / 0.6199 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003148/0.05309, allocations: 2.286 MB / 0.7872 GB, free: 9.324 MB / 0.6199 GB Notification: Performance of pre-optimization done (n=157): time 3.657e-06/0.05309, allocations: 0 / 0.7872 GB, free: 9.324 MB / 0.6199 GB Notification: Performance of matching and sorting (n=165): time 0.01508/0.06817, allocations: 9.303 MB / 0.7963 GB, free: 15.41 MB / 0.6355 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0007396/0.06891, allocations: 1.024 MB / 0.7973 GB, free: 14.16 MB / 0.6355 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001459/0.07037, allocations: 0.9584 MB / 0.7983 GB, free: 13.18 MB / 0.6355 GB Notification: Performance of collectPreVariables (initialization): time 0.000183/0.07055, allocations: 85.69 kB / 0.7983 GB, free: 13.09 MB / 0.6355 GB Notification: Performance of collectInitialEqns (initialization): time 0.0005306/0.07108, allocations: 498.5 kB / 0.7988 GB, free: 12.59 MB / 0.6355 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005926/0.07167, allocations: 0.5231 MB / 0.7993 GB, free: 12.07 MB / 0.6355 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004946/0.07217, allocations: 283.5 kB / 0.7996 GB, free: 11.79 MB / 0.6355 GB Notification: Performance of setup shared object (initialization): time 0.0001523/0.07232, allocations: 301.1 kB / 0.7999 GB, free: 11.49 MB / 0.6355 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00251/0.07483, allocations: 1.626 MB / 0.8015 GB, free: 9.734 MB / 0.6355 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002758/0.07759, allocations: 2.028 MB / 0.8034 GB, free: 7.418 MB / 0.6355 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.009949/0.08754, allocations: 6.594 MB / 0.8099 GB, free: 240 kB / 0.6355 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.945e-05/0.08755, allocations: 4 kB / 0.8099 GB, free: 236 kB / 0.6355 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.006359/0.09391, allocations: 3.909 MB / 0.8137 GB, free: 12.07 MB / 0.6512 GB Notification: Performance of prepare postOptimizeDAE: time 0.0006703/0.09458, allocations: 0.5644 MB / 0.8143 GB, free: 11.38 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.789e-05/0.09461, allocations: 8 kB / 0.8143 GB, free: 11.37 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (initialization): time 5.643e-05/0.09467, allocations: 20.5 kB / 0.8143 GB, free: 11.35 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001423/0.09609, allocations: 323.4 kB / 0.8146 GB, free: 11.04 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.651e-05/0.09613, allocations: 19.94 kB / 0.8146 GB, free: 11.02 MB / 0.6512 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001208/0.09734, allocations: 95.88 kB / 0.8147 GB, free: 10.92 MB / 0.6512 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.000371/0.09771, allocations: 244.7 kB / 0.8149 GB, free: 10.69 MB / 0.6512 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001594/0.0993, allocations: 1.084 MB / 0.816 GB, free: 9.504 MB / 0.6512 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004725/0.09977, allocations: 171 kB / 0.8162 GB, free: 9.336 MB / 0.6512 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002962/0.1001, allocations: 141.6 kB / 0.8163 GB, free: 9.195 MB / 0.6512 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.402e-05/0.1001, allocations: 12 kB / 0.8163 GB, free: 9.184 MB / 0.6512 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.131e-05/0.1001, allocations: 0 / 0.8163 GB, free: 9.184 MB / 0.6512 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.718e-05/0.1001, allocations: 19.84 kB / 0.8163 GB, free: 9.164 MB / 0.6512 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007937/0.108, allocations: 5.047 MB / 0.8213 GB, free: 3.875 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.956e-06/0.1081, allocations: 4 kB / 0.8213 GB, free: 3.871 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001219/0.1093, allocations: 239.7 kB / 0.8215 GB, free: 3.637 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.076e-05/0.1093, allocations: 8 kB / 0.8215 GB, free: 3.629 MB / 0.6512 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.000148/0.1094, allocations: 67.95 kB / 0.8216 GB, free: 3.562 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.468e-06/0.1094, allocations: 4 kB / 0.8216 GB, free: 3.559 MB / 0.6512 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.422e-06/0.1095, allocations: 7.938 kB / 0.8216 GB, free: 3.551 MB / 0.6512 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.008418/0.1179, allocations: 5.843 MB / 0.8273 GB, free: 13.39 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0008094/0.1187, allocations: 326.9 kB / 0.8276 GB, free: 13.07 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002532/0.1189, allocations: 71.98 kB / 0.8277 GB, free: 13 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008232/0.1198, allocations: 71.94 kB / 0.8277 GB, free: 12.93 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003863/0.1201, allocations: 159.7 kB / 0.8279 GB, free: 12.77 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0003463/0.1205, allocations: 245.1 kB / 0.8281 GB, free: 12.54 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.001089/0.1216, allocations: 0.6767 MB / 0.8288 GB, free: 11.85 MB / 0.6668 GB Notification: Performance of sort global known variables: time 6e-08/0.1216, allocations: 0 / 0.8288 GB, free: 11.85 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.001299/0.1229, allocations: 372 kB / 0.8291 GB, free: 11.49 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0005113/0.1234, allocations: 298.6 kB / 0.8294 GB, free: 11.2 MB / 0.6668 GB Notification: Performance of simCode: created initialization part: time 0.006146/0.1295, allocations: 4.495 MB / 0.8338 GB, free: 6.242 MB / 0.6668 GB Notification: Performance of simCode: created event and clocks part: time 3.637e-06/0.1295, allocations: 0 / 0.8338 GB, free: 6.242 MB / 0.6668 GB Notification: Performance of simCode: created simulation system equations: time 0.003532/0.1331, allocations: 2.577 MB / 0.8363 GB, free: 3.371 MB / 0.6668 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002036/0.1351, allocations: 362 kB / 0.8367 GB, free: 3.035 MB / 0.6668 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007813/0.1429, allocations: 4.56 MB / 0.8411 GB, free: 14.39 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001127/0.144, allocations: 0.652 MB / 0.8418 GB, free: 13.7 MB / 0.6824 GB Notification: Performance of simCode: alias equations: time 0.0006711/0.1447, allocations: 115.5 kB / 0.8419 GB, free: 13.59 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002348/0.145, allocations: 88.48 kB / 0.8419 GB, free: 13.5 MB / 0.6824 GB Notification: Performance of SimCode: time 1.332e-06/0.145, allocations: 0 / 0.8419 GB, free: 13.5 MB / 0.6824 GB Notification: Performance of Templates: time 0.3447/0.4897, allocations: 22.49 MB / 0.8639 GB, free: 95.47 MB / 0.6824 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 10.874997382983565]