Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002067/0.002067, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002272/0.002272, allocations: 170.3 kB / 22.46 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.647/1.647, allocations: 177.1 MB / 202.8 MB, free: 5.758 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.621/3.621, allocations: 274 MB / 0.5207 GB, free: 14.89 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.185e-06/2.185e-06, allocations: 1.312 kB / 0.7563 GB, free: 9.91 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.127e-05/3.345e-05, allocations: 6.281 kB / 0.7563 GB, free: 9.902 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.009026/0.009059, allocations: 6.221 MB / 0.7623 GB, free: 3.711 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.002947/0.01201, allocations: 1.301 MB / 0.7636 GB, free: 2.414 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003721/0.01238, allocations: 11.94 kB / 0.7636 GB, free: 2.402 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0002842/0.01266, allocations: 110.8 kB / 0.7637 GB, free: 2.293 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0007506/0.01341, allocations: 337.1 kB / 0.764 GB, free: 1.961 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006803/0.01409, allocations: 295.5 kB / 0.7643 GB, free: 1.672 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.001481/0.01557, allocations: 1.221 MB / 0.7655 GB, free: 456 kB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003844/0.01596, allocations: 171.9 kB / 0.7657 GB, free: 268 kB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0008865/0.01685, allocations: 0.6199 MB / 0.7663 GB, free: 15.64 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006348/0.01748, allocations: 350.9 kB / 0.7666 GB, free: 15.3 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0001617/0.01764, allocations: 112 kB / 0.7667 GB, free: 15.19 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002007/0.01784, allocations: 112 kB / 0.7668 GB, free: 15.08 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0001998/0.01804, allocations: 191.2 kB / 0.767 GB, free: 14.89 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0004829/0.01853, allocations: 363.2 kB / 0.7674 GB, free: 14.54 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.001471/0.02, allocations: 1.18 MB / 0.7685 GB, free: 13.35 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 6.973e-06/0.02, allocations: 3.984 kB / 0.7685 GB, free: 13.35 MB / 0.6043 GB Notification: Performance of FrontEnd: time 2.184e-06/0.02001, allocations: 0 / 0.7685 GB, free: 13.35 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 1.535e-05/0.02002, allocations: 0 / 0.7685 GB, free: 13.35 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.002564/0.02258, allocations: 1.325 MB / 0.7698 GB, free: 11.94 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 4.659e-05/0.02263, allocations: 8.031 kB / 0.7698 GB, free: 11.93 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001731/0.0228, allocations: 91.44 kB / 0.7699 GB, free: 11.84 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007733/0.02358, allocations: 456.8 kB / 0.7703 GB, free: 11.36 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.978e-05/0.02364, allocations: 49.3 kB / 0.7704 GB, free: 11.32 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001401/0.02378, allocations: 75.95 kB / 0.7705 GB, free: 11.24 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001582/0.02536, allocations: 0.8436 MB / 0.7713 GB, free: 10.33 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.212e-05/0.0254, allocations: 11.94 kB / 0.7713 GB, free: 10.32 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.505e-05/0.02547, allocations: 24 kB / 0.7713 GB, free: 10.3 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.971e-05/0.02549, allocations: 23.88 kB / 0.7713 GB, free: 10.27 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001554/0.02704, allocations: 0.7426 MB / 0.7721 GB, free: 9.496 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0029/0.02994, allocations: 1.741 MB / 0.7738 GB, free: 7.703 MB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001836/0.03178, allocations: 0.8079 MB / 0.7746 GB, free: 6.832 MB / 0.6043 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0008641/0.03264, allocations: 481.3 kB / 0.775 GB, free: 6.316 MB / 0.6043 GB Notification: Performance of preOpt evalFunc (simulation): time 5.344e-05/0.03269, allocations: 8 kB / 0.775 GB, free: 6.309 MB / 0.6043 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001605/0.0343, allocations: 1.111 MB / 0.7761 GB, free: 5.074 MB / 0.6043 GB Notification: Performance of pre-optimization done (n=99): time 2.184e-06/0.0343, allocations: 0 / 0.7761 GB, free: 5.074 MB / 0.6043 GB Notification: Performance of matching and sorting (n=105): time 0.006832/0.04113, allocations: 3.553 MB / 0.7796 GB, free: 1.254 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0004239/0.04156, allocations: 0.5912 MB / 0.7802 GB, free: 0.5273 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007928/0.04235, allocations: 0.5301 MB / 0.7807 GB, free: 15.98 MB / 0.6199 GB Notification: Performance of collectPreVariables (initialization): time 9.806e-05/0.04245, allocations: 65.64 kB / 0.7807 GB, free: 15.91 MB / 0.6199 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003026/0.04275, allocations: 297.5 kB / 0.781 GB, free: 15.62 MB / 0.6199 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003535/0.0431, allocations: 349.2 kB / 0.7814 GB, free: 15.27 MB / 0.6199 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003188/0.04342, allocations: 190.6 kB / 0.7815 GB, free: 15.08 MB / 0.6199 GB Notification: Performance of setup shared object (initialization): time 0.0002619/0.04369, allocations: 394.7 kB / 0.7819 GB, free: 14.69 MB / 0.6199 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001085/0.04477, allocations: 0.6368 MB / 0.7825 GB, free: 13.99 MB / 0.6199 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001384/0.04615, allocations: 0.9645 MB / 0.7835 GB, free: 12.84 MB / 0.6199 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004537/0.05069, allocations: 2.498 MB / 0.7859 GB, free: 10.02 MB / 0.6199 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.411e-05/0.05071, allocations: 8 kB / 0.7859 GB, free: 10.02 MB / 0.6199 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.003095/0.0538, allocations: 1.725 MB / 0.7876 GB, free: 8.172 MB / 0.6199 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002257/0.05403, allocations: 271.4 kB / 0.7879 GB, free: 7.852 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.225e-05/0.05405, allocations: 11.98 kB / 0.7879 GB, free: 7.84 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.586e-05/0.05408, allocations: 16 kB / 0.7879 GB, free: 7.824 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000933/0.05502, allocations: 235.6 kB / 0.7881 GB, free: 7.594 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.045e-05/0.05505, allocations: 23.92 kB / 0.7881 GB, free: 7.57 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006854/0.05573, allocations: 59.95 kB / 0.7882 GB, free: 7.512 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.083e-05/0.05582, allocations: 56 kB / 0.7883 GB, free: 7.457 MB / 0.6199 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008421/0.05667, allocations: 0.5775 MB / 0.7888 GB, free: 6.84 MB / 0.6199 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001577/0.05682, allocations: 87.48 kB / 0.7889 GB, free: 6.754 MB / 0.6199 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001805/0.057, allocations: 85.22 kB / 0.789 GB, free: 6.668 MB / 0.6199 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.236e-05/0.05702, allocations: 8 kB / 0.789 GB, free: 6.66 MB / 0.6199 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.044e-05/0.05703, allocations: 0 / 0.789 GB, free: 6.66 MB / 0.6199 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.455e-05/0.05704, allocations: 7.984 kB / 0.789 GB, free: 6.652 MB / 0.6199 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003956/0.061, allocations: 2.318 MB / 0.7913 GB, free: 4.219 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.852e-06/0.061, allocations: 4 kB / 0.7913 GB, free: 4.215 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008637/0.06187, allocations: 167.8 kB / 0.7914 GB, free: 4.051 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.804e-06/0.06188, allocations: 4 kB / 0.7914 GB, free: 4.047 MB / 0.6199 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.779e-05/0.06196, allocations: 39.97 kB / 0.7915 GB, free: 4.008 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.833e-06/0.06197, allocations: 8 kB / 0.7915 GB, free: 4 MB / 0.6199 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.877e-06/0.06197, allocations: 3.938 kB / 0.7915 GB, free: 3.996 MB / 0.6199 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003687/0.06566, allocations: 2.237 MB / 0.7937 GB, free: 1.633 MB / 0.6199 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0004238/0.06609, allocations: 167.4 kB / 0.7938 GB, free: 1.469 MB / 0.6199 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001661/0.06625, allocations: 52.12 kB / 0.7939 GB, free: 1.418 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005616/0.06681, allocations: 51.89 kB / 0.7939 GB, free: 1.367 MB / 0.6199 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002514/0.06707, allocations: 99.84 kB / 0.794 GB, free: 1.27 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.626e-05/0.06714, allocations: 43.91 kB / 0.7941 GB, free: 1.227 MB / 0.6199 GB Notification: Performance of sorting global known variables: time 0.0005099/0.06765, allocations: 366.9 kB / 0.7944 GB, free: 0.8711 MB / 0.6199 GB Notification: Performance of sort global known variables: time 8e-08/0.06765, allocations: 0 / 0.7944 GB, free: 0.8711 MB / 0.6199 GB Notification: Performance of remove unused functions: time 0.0008796/0.06853, allocations: 248 kB / 0.7946 GB, free: 0.6289 MB / 0.6199 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002821/0.06881, allocations: 193.6 kB / 0.7948 GB, free: 444 kB / 0.6199 GB Notification: Performance of simCode: created initialization part: time 0.002906/0.07172, allocations: 1.832 MB / 0.7966 GB, free: 14.4 MB / 0.6355 GB Notification: Performance of simCode: created event and clocks part: time 3.297e-06/0.07172, allocations: 0 / 0.7966 GB, free: 14.4 MB / 0.6355 GB Notification: Performance of simCode: created simulation system equations: time 0.001451/0.07317, allocations: 0.9747 MB / 0.7976 GB, free: 13.32 MB / 0.6355 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001449/0.07462, allocations: 259 kB / 0.7978 GB, free: 13.08 MB / 0.6355 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004203/0.07882, allocations: 2.324 MB / 0.8001 GB, free: 10.73 MB / 0.6355 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004433/0.07927, allocations: 366 kB / 0.8004 GB, free: 10.35 MB / 0.6355 GB Notification: Performance of simCode: alias equations: time 0.0004905/0.07976, allocations: 97.56 kB / 0.8005 GB, free: 10.25 MB / 0.6355 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001828/0.07994, allocations: 64.5 kB / 0.8006 GB, free: 10.19 MB / 0.6355 GB Notification: Performance of SimCode: time 1.342e-06/0.07994, allocations: 0 / 0.8006 GB, free: 10.19 MB / 0.6355 GB Notification: Performance of Templates: time 0.02588/0.1058, allocations: 14.03 MB / 0.8143 GB, free: 12.93 MB / 0.6512 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.702636116184294]