Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001847/0.001847, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00198/0.00198, allocations: 169.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.655/1.655, allocations: 177.1 MB / 202.8 MB, free: 5.746 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.643/3.643, allocations: 274 MB / 0.5207 GB, free: 14.83 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.114e-06/2.114e-06, allocations: 0 / 0.7563 GB, free: 9.867 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.143e-05/3.354e-05, allocations: 2.281 kB / 0.7563 GB, free: 9.863 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.01345/0.01349, allocations: 9.867 MB / 0.7659 GB, free: 12 kB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.005/0.01849, allocations: 2.257 MB / 0.7681 GB, free: 13.76 MB / 0.6043 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0008351/0.01932, allocations: 19.94 kB / 0.7681 GB, free: 13.74 MB / 0.6043 GB Notification: Performance of NFTyping.typeComponents: time 0.0005402/0.01986, allocations: 221.6 kB / 0.7683 GB, free: 13.52 MB / 0.6043 GB Notification: Performance of NFTyping.typeBindings: time 0.001539/0.0214, allocations: 0.6897 MB / 0.769 GB, free: 12.82 MB / 0.6043 GB Notification: Performance of NFTyping.typeClassSections: time 0.001305/0.02271, allocations: 0.632 MB / 0.7696 GB, free: 12.19 MB / 0.6043 GB Notification: Performance of NFFlatten.flatten: time 0.003576/0.02628, allocations: 2.672 MB / 0.7722 GB, free: 9.508 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0007255/0.02701, allocations: 361.8 kB / 0.7726 GB, free: 9.121 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001933/0.02894, allocations: 1.361 MB / 0.7739 GB, free: 7.758 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001226/0.03017, allocations: 0.7128 MB / 0.7746 GB, free: 7.043 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0003701/0.03054, allocations: 280 kB / 0.7749 GB, free: 6.77 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004467/0.03098, allocations: 288 kB / 0.7751 GB, free: 6.488 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.000423/0.0314, allocations: 442.5 kB / 0.7756 GB, free: 6.055 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0009862/0.03239, allocations: 0.764 MB / 0.7763 GB, free: 5.289 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.003608/0.036, allocations: 2.919 MB / 0.7792 GB, free: 2.363 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 4.278e-06/0.036, allocations: 0 / 0.7792 GB, free: 2.363 MB / 0.6043 GB Notification: Performance of FrontEnd: time 1.412e-06/0.03601, allocations: 0 / 0.7792 GB, free: 2.363 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 2.219e-05/0.03603, allocations: 0 / 0.7792 GB, free: 2.363 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.004649/0.04068, allocations: 2.479 MB / 0.7816 GB, free: 15.73 MB / 0.6199 GB Notification: Performance of prepare preOptimizeDAE: time 3.898e-05/0.04072, allocations: 8.031 kB / 0.7816 GB, free: 15.72 MB / 0.6199 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003277/0.04104, allocations: 194.8 kB / 0.7818 GB, free: 15.53 MB / 0.6199 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001478/0.04252, allocations: 0.8681 MB / 0.7826 GB, free: 14.62 MB / 0.6199 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.729e-05/0.04262, allocations: 86.17 kB / 0.7827 GB, free: 14.54 MB / 0.6199 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002691/0.04289, allocations: 143.8 kB / 0.7828 GB, free: 14.39 MB / 0.6199 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003549/0.04644, allocations: 1.761 MB / 0.7846 GB, free: 12.49 MB / 0.6199 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.601e-05/0.04651, allocations: 31.77 kB / 0.7846 GB, free: 12.46 MB / 0.6199 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000124/0.04664, allocations: 48 kB / 0.7846 GB, free: 12.41 MB / 0.6199 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.062e-05/0.04667, allocations: 28 kB / 0.7847 GB, free: 12.39 MB / 0.6199 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003391/0.05006, allocations: 1.585 MB / 0.7862 GB, free: 10.73 MB / 0.6199 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00635/0.05641, allocations: 3.907 MB / 0.79 GB, free: 6.746 MB / 0.6199 GB Notification: Performance of preOpt comSubExp (simulation): time 0.004128/0.06054, allocations: 1.729 MB / 0.7917 GB, free: 4.895 MB / 0.6199 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002023/0.06256, allocations: 1.007 MB / 0.7927 GB, free: 3.797 MB / 0.6199 GB Notification: Performance of preOpt evalFunc (simulation): time 8.125e-05/0.06264, allocations: 20 kB / 0.7927 GB, free: 3.777 MB / 0.6199 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003349/0.06599, allocations: 2.282 MB / 0.795 GB, free: 1.262 MB / 0.6199 GB Notification: Performance of pre-optimization done (n=198): time 3.927e-06/0.06599, allocations: 3.938 kB / 0.795 GB, free: 1.258 MB / 0.6199 GB Notification: Performance of matching and sorting (n=210): time 0.01586/0.08185, allocations: 7.848 MB / 0.8026 GB, free: 8.875 MB / 0.6355 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0008838/0.08274, allocations: 1.173 MB / 0.8038 GB, free: 7.438 MB / 0.6355 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00202/0.08476, allocations: 1.027 MB / 0.8048 GB, free: 6.391 MB / 0.6355 GB Notification: Performance of collectPreVariables (initialization): time 0.0002298/0.08499, allocations: 101.7 kB / 0.8049 GB, free: 6.285 MB / 0.6355 GB Notification: Performance of collectInitialEqns (initialization): time 0.0005938/0.08558, allocations: 0.5302 MB / 0.8054 GB, free: 5.746 MB / 0.6355 GB Notification: Performance of collectInitialBindings (initialization): time 0.0007621/0.08634, allocations: 0.682 MB / 0.806 GB, free: 5.059 MB / 0.6355 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006332/0.08698, allocations: 360.7 kB / 0.8064 GB, free: 4.699 MB / 0.6355 GB Notification: Performance of setup shared object (initialization): time 0.0001645/0.08714, allocations: 309.1 kB / 0.8067 GB, free: 4.395 MB / 0.6355 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002391/0.08953, allocations: 1.348 MB / 0.808 GB, free: 2.934 MB / 0.6355 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.003034/0.09257, allocations: 2.009 MB / 0.81 GB, free: 0.5273 MB / 0.6355 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.01006/0.1026, allocations: 5.251 MB / 0.8151 GB, free: 10.65 MB / 0.6512 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.446e-05/0.1027, allocations: 7.984 kB / 0.8151 GB, free: 10.64 MB / 0.6512 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.007382/0.11, allocations: 3.626 MB / 0.8186 GB, free: 6.785 MB / 0.6512 GB Notification: Performance of prepare postOptimizeDAE: time 0.0004297/0.1105, allocations: 0.5128 MB / 0.8191 GB, free: 6.164 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.095e-05/0.1105, allocations: 16 kB / 0.8192 GB, free: 6.148 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (initialization): time 5.344e-05/0.1106, allocations: 28 kB / 0.8192 GB, free: 6.121 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001921/0.1125, allocations: 479.2 kB / 0.8196 GB, free: 5.652 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.366e-05/0.1125, allocations: 39.89 kB / 0.8197 GB, free: 5.613 MB / 0.6512 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001514/0.114, allocations: 131.9 kB / 0.8198 GB, free: 5.484 MB / 0.6512 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001921/0.1142, allocations: 100 kB / 0.8199 GB, free: 5.387 MB / 0.6512 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.00177/0.116, allocations: 1.12 MB / 0.821 GB, free: 4.199 MB / 0.6512 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000381/0.1164, allocations: 171 kB / 0.8212 GB, free: 4.031 MB / 0.6512 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003536/0.1167, allocations: 165.6 kB / 0.8213 GB, free: 3.867 MB / 0.6512 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.879e-05/0.1168, allocations: 16 kB / 0.8213 GB, free: 3.852 MB / 0.6512 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.849e-05/0.1168, allocations: 4 kB / 0.8213 GB, free: 3.848 MB / 0.6512 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.947e-05/0.1168, allocations: 7.969 kB / 0.8213 GB, free: 3.84 MB / 0.6512 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.009409/0.1262, allocations: 4.964 MB / 0.8262 GB, free: 14.69 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.686e-05/0.1262, allocations: 11.94 kB / 0.8262 GB, free: 14.68 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001829/0.128, allocations: 339.1 kB / 0.8265 GB, free: 14.35 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.696e-05/0.1281, allocations: 8 kB / 0.8265 GB, free: 14.34 MB / 0.6668 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001987/0.1283, allocations: 79.95 kB / 0.8266 GB, free: 14.26 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.644e-05/0.1283, allocations: 11.94 kB / 0.8266 GB, free: 14.25 MB / 0.6668 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.595e-06/0.1283, allocations: 3.938 kB / 0.8266 GB, free: 14.25 MB / 0.6668 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00834/0.1366, allocations: 4.663 MB / 0.8312 GB, free: 9.344 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001437/0.1381, allocations: 390.7 kB / 0.8316 GB, free: 8.961 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0004431/0.1385, allocations: 108 kB / 0.8317 GB, free: 8.855 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001175/0.1397, allocations: 95.91 kB / 0.8317 GB, free: 8.762 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0005456/0.1402, allocations: 223.6 kB / 0.832 GB, free: 8.543 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001452/0.1404, allocations: 71.95 kB / 0.832 GB, free: 8.473 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.001186/0.1416, allocations: 0.6858 MB / 0.8327 GB, free: 7.777 MB / 0.6668 GB Notification: Performance of sort global known variables: time 9e-08/0.1416, allocations: 0 / 0.8327 GB, free: 7.777 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.001822/0.1434, allocations: 496 kB / 0.8332 GB, free: 7.293 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004994/0.1439, allocations: 315.3 kB / 0.8335 GB, free: 6.965 MB / 0.6668 GB Notification: Performance of simCode: created initialization part: time 0.006483/0.1504, allocations: 3.827 MB / 0.8372 GB, free: 2.734 MB / 0.6668 GB Notification: Performance of simCode: created event and clocks part: time 4.539e-06/0.1504, allocations: 4.125 kB / 0.8372 GB, free: 2.73 MB / 0.6668 GB Notification: Performance of simCode: created simulation system equations: time 0.003883/0.1542, allocations: 2.117 MB / 0.8393 GB, free: 404 kB / 0.6668 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.003155/0.1574, allocations: 0.5397 MB / 0.8398 GB, free: 15.89 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009147/0.1665, allocations: 4.709 MB / 0.8444 GB, free: 11.16 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009479/0.1675, allocations: 0.6665 MB / 0.8451 GB, free: 10.45 MB / 0.6824 GB Notification: Performance of simCode: alias equations: time 0.001133/0.1686, allocations: 187.5 kB / 0.8452 GB, free: 10.27 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006496/0.1693, allocations: 124.5 kB / 0.8454 GB, free: 10.15 MB / 0.6824 GB Notification: Performance of SimCode: time 1.183e-06/0.1693, allocations: 0 / 0.8454 GB, free: 10.15 MB / 0.6824 GB Notification: Performance of Templates: time 0.3282/0.4974, allocations: 30.1 MB / 0.8747 GB, free: 98.84 MB / 0.6824 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 10.426259266212583]