Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002308/0.002308, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002827/0.002827, allocations: 165.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.657/1.657, allocations: 177.1 MB / 202.8 MB, free: 5.707 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.544/3.544, allocations: 274 MB / 0.5207 GB, free: 14.95 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.144e-06/2.144e-06, allocations: 0 / 0.7565 GB, free: 9.781 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.528e-05/2.742e-05, allocations: 4.953 kB / 0.7565 GB, free: 9.777 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.006992/0.007019, allocations: 5.104 MB / 0.7615 GB, free: 4.711 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.002484/0.009503, allocations: 1.309 MB / 0.7627 GB, free: 3.406 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002288/0.009732, allocations: 8 kB / 0.7627 GB, free: 3.398 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0002781/0.01001, allocations: 126.7 kB / 0.7629 GB, free: 3.273 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0006807/0.01069, allocations: 368.8 kB / 0.7632 GB, free: 2.91 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005185/0.01121, allocations: 255.6 kB / 0.7635 GB, free: 2.66 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.001369/0.01258, allocations: 1.275 MB / 0.7647 GB, free: 1.379 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003875/0.01297, allocations: 207.4 kB / 0.7649 GB, free: 1.164 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0008014/0.01377, allocations: 0.6627 MB / 0.7655 GB, free: 0.5 MB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006279/0.01439, allocations: 374.9 kB / 0.7659 GB, free: 136 kB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 0.0001525/0.01455, allocations: 108 kB / 0.766 GB, free: 28 kB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002098/0.01476, allocations: 112 kB / 0.7661 GB, free: 15.91 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0002004/0.01496, allocations: 203.2 kB / 0.7663 GB, free: 15.72 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0004845/0.01544, allocations: 383.2 kB / 0.7667 GB, free: 15.34 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.001371/0.01681, allocations: 1.173 MB / 0.7678 GB, free: 14.17 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 6.933e-06/0.01682, allocations: 4 kB / 0.7678 GB, free: 14.16 MB / 0.6043 GB Notification: Performance of FrontEnd: time 1.563e-06/0.01682, allocations: 0 / 0.7678 GB, free: 14.16 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 1.424e-05/0.01684, allocations: 0 / 0.7678 GB, free: 14.16 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.002817/0.01965, allocations: 1.386 MB / 0.7692 GB, free: 12.69 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 3.922e-05/0.01969, allocations: 8.031 kB / 0.7692 GB, free: 12.68 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001787/0.01987, allocations: 100.3 kB / 0.7693 GB, free: 12.58 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007262/0.0206, allocations: 453.3 kB / 0.7697 GB, free: 12.11 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.861e-05/0.02066, allocations: 53.69 kB / 0.7698 GB, free: 12.06 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001433/0.0208, allocations: 76.33 kB / 0.7698 GB, free: 11.98 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001648/0.02245, allocations: 0.8818 MB / 0.7707 GB, free: 11.05 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.851e-05/0.0225, allocations: 23.88 kB / 0.7707 GB, free: 11.02 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.374e-05/0.02256, allocations: 24 kB / 0.7707 GB, free: 11 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.849e-05/0.02258, allocations: 16 kB / 0.7708 GB, free: 10.98 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001651/0.02423, allocations: 0.7763 MB / 0.7715 GB, free: 10.17 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003554/0.02778, allocations: 1.923 MB / 0.7734 GB, free: 8.203 MB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001496/0.02928, allocations: 0.7274 MB / 0.7741 GB, free: 7.434 MB / 0.6043 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0008551/0.03013, allocations: 487.8 kB / 0.7746 GB, free: 6.922 MB / 0.6043 GB Notification: Performance of preOpt evalFunc (simulation): time 3.607e-05/0.03017, allocations: 8.656 kB / 0.7746 GB, free: 6.914 MB / 0.6043 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001663/0.03183, allocations: 1.04 MB / 0.7756 GB, free: 5.75 MB / 0.6043 GB Notification: Performance of pre-optimization done (n=99): time 2.564e-06/0.03184, allocations: 0 / 0.7756 GB, free: 5.75 MB / 0.6043 GB Notification: Performance of matching and sorting (n=105): time 0.006341/0.03818, allocations: 3.215 MB / 0.7787 GB, free: 2.336 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003999/0.03858, allocations: 0.5459 MB / 0.7793 GB, free: 1.664 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007256/0.0393, allocations: 0.5183 MB / 0.7798 GB, free: 1.133 MB / 0.6043 GB Notification: Performance of collectPreVariables (initialization): time 8.671e-05/0.03939, allocations: 57.7 kB / 0.7798 GB, free: 1.07 MB / 0.6043 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003092/0.0397, allocations: 337.4 kB / 0.7801 GB, free: 0.7344 MB / 0.6043 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003305/0.04003, allocations: 341.2 kB / 0.7805 GB, free: 408 kB / 0.6043 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000296/0.04032, allocations: 178.6 kB / 0.7806 GB, free: 224 kB / 0.6043 GB Notification: Performance of setup shared object (initialization): time 0.0002614/0.04059, allocations: 398.7 kB / 0.781 GB, free: 15.82 MB / 0.6199 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001303/0.04189, allocations: 0.6252 MB / 0.7816 GB, free: 15.14 MB / 0.6199 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001413/0.0433, allocations: 0.9416 MB / 0.7826 GB, free: 14.02 MB / 0.6199 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004512/0.04781, allocations: 2.473 MB / 0.785 GB, free: 11.24 MB / 0.6199 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.516e-05/0.04783, allocations: 4 kB / 0.785 GB, free: 11.24 MB / 0.6199 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.002937/0.05077, allocations: 1.71 MB / 0.7866 GB, free: 9.406 MB / 0.6199 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001983/0.05097, allocations: 263.3 kB / 0.7869 GB, free: 9.094 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.471e-05/0.05098, allocations: 7.984 kB / 0.7869 GB, free: 9.086 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.854e-05/0.05101, allocations: 16 kB / 0.7869 GB, free: 9.07 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009093/0.05192, allocations: 227.6 kB / 0.7871 GB, free: 8.848 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.715e-05/0.05195, allocations: 19.92 kB / 0.7872 GB, free: 8.828 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006552/0.0526, allocations: 72.14 kB / 0.7872 GB, free: 8.758 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.495e-05/0.05269, allocations: 48 kB / 0.7873 GB, free: 8.711 MB / 0.6199 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008131/0.0535, allocations: 0.5645 MB / 0.7878 GB, free: 8.109 MB / 0.6199 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001328/0.05363, allocations: 83.53 kB / 0.7879 GB, free: 8.027 MB / 0.6199 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001603/0.05379, allocations: 79.64 kB / 0.788 GB, free: 7.949 MB / 0.6199 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.278e-06/0.0538, allocations: 8 kB / 0.788 GB, free: 7.941 MB / 0.6199 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 7.264e-06/0.05381, allocations: 7.938 kB / 0.788 GB, free: 7.934 MB / 0.6199 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.598e-06/0.05382, allocations: 3.984 kB / 0.788 GB, free: 7.93 MB / 0.6199 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00369/0.05751, allocations: 2.131 MB / 0.7901 GB, free: 5.695 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.055e-06/0.05751, allocations: 3.938 kB / 0.7901 GB, free: 5.691 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008603/0.05837, allocations: 167.8 kB / 0.7902 GB, free: 5.527 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.588e-06/0.05838, allocations: 7.938 kB / 0.7902 GB, free: 5.52 MB / 0.6199 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.899e-05/0.05846, allocations: 39.97 kB / 0.7903 GB, free: 5.48 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.466e-06/0.05846, allocations: 0 / 0.7903 GB, free: 5.48 MB / 0.6199 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.677e-06/0.05847, allocations: 4 kB / 0.7903 GB, free: 5.477 MB / 0.6199 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003481/0.06195, allocations: 2.088 MB / 0.7923 GB, free: 3.262 MB / 0.6199 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001515/0.0621, allocations: 67.52 kB / 0.7924 GB, free: 3.195 MB / 0.6199 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000154/0.06225, allocations: 40 kB / 0.7924 GB, free: 3.156 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000466/0.06272, allocations: 47.95 kB / 0.7925 GB, free: 3.109 MB / 0.6199 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002294/0.06295, allocations: 96.84 kB / 0.7926 GB, free: 3.016 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.267e-05/0.06302, allocations: 35.98 kB / 0.7926 GB, free: 2.98 MB / 0.6199 GB Notification: Performance of sorting global known variables: time 0.0004656/0.06349, allocations: 354.9 kB / 0.7929 GB, free: 2.637 MB / 0.6199 GB Notification: Performance of sort global known variables: time 8e-08/0.06349, allocations: 4 kB / 0.7929 GB, free: 2.633 MB / 0.6199 GB Notification: Performance of remove unused functions: time 0.0007513/0.06424, allocations: 256 kB / 0.7932 GB, free: 2.383 MB / 0.6199 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002707/0.06451, allocations: 189.2 kB / 0.7934 GB, free: 2.195 MB / 0.6199 GB Notification: Performance of simCode: created initialization part: time 0.002726/0.06723, allocations: 1.807 MB / 0.7951 GB, free: 188 kB / 0.6199 GB Notification: Performance of simCode: created event and clocks part: time 2.154e-06/0.06724, allocations: 0 / 0.7951 GB, free: 188 kB / 0.6199 GB Notification: Performance of simCode: created simulation system equations: time 0.00128/0.06852, allocations: 0.9533 MB / 0.7961 GB, free: 15.12 MB / 0.6355 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001171/0.06969, allocations: 259.4 kB / 0.7963 GB, free: 14.88 MB / 0.6355 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004098/0.07379, allocations: 2.377 MB / 0.7986 GB, free: 12.48 MB / 0.6355 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004326/0.07422, allocations: 370.8 kB / 0.799 GB, free: 12.09 MB / 0.6355 GB Notification: Performance of simCode: alias equations: time 0.0003613/0.07458, allocations: 89.64 kB / 0.7991 GB, free: 12 MB / 0.6355 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001755/0.07476, allocations: 64.5 kB / 0.7991 GB, free: 11.94 MB / 0.6355 GB Notification: Performance of SimCode: time 6.42e-07/0.07476, allocations: 0 / 0.7991 GB, free: 11.94 MB / 0.6355 GB Notification: Performance of Templates: time 0.02475/0.09951, allocations: 13.36 MB / 0.8122 GB, free: 15.38 MB / 0.6512 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 11.369254841003567]