Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001879/0.001879, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001997/0.001997, allocations: 169.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.677/1.677, allocations: 177.1 MB / 202.8 MB, free: 5.723 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.445/3.445, allocations: 274 MB / 0.5207 GB, free: 14.87 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.154e-06/2.154e-06, allocations: 0 / 0.7563 GB, free: 9.883 MB / 0.5887 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.577e-05/2.792e-05, allocations: 8.609 kB / 0.7563 GB, free: 9.875 MB / 0.5887 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.002477/0.002505, allocations: 1.265 MB / 0.7575 GB, free: 8.613 MB / 0.5887 GB
Notification: Performance of NFInst.instExpressions: time 0.0002456/0.00275, allocations: 54.12 kB / 0.7576 GB, free: 8.562 MB / 0.5887 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.007e-05/0.00279, allocations: 0 / 0.7576 GB, free: 8.562 MB / 0.5887 GB
Notification: Performance of NFTyping.typeComponents: time 7.584e-05/0.002866, allocations: 3.938 kB / 0.7576 GB, free: 8.559 MB / 0.5887 GB
Notification: Performance of NFTyping.typeBindings: time 3.682e-05/0.002903, allocations: 3.062 kB / 0.7576 GB, free: 8.559 MB / 0.5887 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000166/0.003069, allocations: 19.91 kB / 0.7576 GB, free: 8.539 MB / 0.5887 GB
Notification: Performance of NFFlatten.flatten: time 0.0002289/0.003298, allocations: 147.9 kB / 0.7577 GB, free: 8.398 MB / 0.5887 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.989e-05/0.003348, allocations: 9.312 kB / 0.7577 GB, free: 8.391 MB / 0.5887 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001659/0.003514, allocations: 73.12 kB / 0.7578 GB, free: 8.32 MB / 0.5887 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000195/0.003709, allocations: 81.61 kB / 0.7579 GB, free: 8.242 MB / 0.5887 GB
Notification: Performance of NFPackage.collectConstants: time 4.559e-05/0.003754, allocations: 8 kB / 0.7579 GB, free: 8.234 MB / 0.5887 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.627e-05/0.003781, allocations: 8 kB / 0.7579 GB, free: 8.227 MB / 0.5887 GB
Notification: Performance of NFScalarize.scalarize: time 4.709e-05/0.003828, allocations: 26.69 kB / 0.7579 GB, free: 8.203 MB / 0.5887 GB
Notification: Performance of NFVerifyModel.verify: time 6.447e-05/0.003892, allocations: 37.47 kB / 0.758 GB, free: 8.168 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001574/0.00405, allocations: 90.36 kB / 0.758 GB, free: 8.082 MB / 0.5887 GB
Notification: Performance of FrontEnd - DAE generated: time 2.465e-06/0.004052, allocations: 4 kB / 0.758 GB, free: 8.078 MB / 0.5887 GB
Notification: Performance of FrontEnd: time 6.61e-07/0.004053, allocations: 4 kB / 0.7581 GB, free: 8.074 MB / 0.5887 GB
Notification: Performance of Transformations before backend: time 3.957e-06/0.004057, allocations: 0 / 0.7581 GB, free: 8.074 MB / 0.5887 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.001848/0.005904, allocations: 491.4 kB / 0.7585 GB, free: 7.562 MB / 0.5887 GB
Notification: Performance of prepare preOptimizeDAE: time 3.959e-05/0.005944, allocations: 12.03 kB / 0.7585 GB, free: 7.551 MB / 0.5887 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.452e-05/0.005989, allocations: 8.891 kB / 0.7585 GB, free: 7.543 MB / 0.5887 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001968/0.006185, allocations: 137 kB / 0.7587 GB, free: 7.387 MB / 0.5887 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.352e-05/0.006199, allocations: 4.375 kB / 0.7587 GB, free: 7.383 MB / 0.5887 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.193e-05/0.006231, allocations: 4.375 kB / 0.7587 GB, free: 7.379 MB / 0.5887 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005004/0.006731, allocations: 153.2 kB / 0.7588 GB, free: 7.219 MB / 0.5887 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.023e-05/0.006741, allocations: 192 / 0.7588 GB, free: 7.219 MB / 0.5887 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.581e-05/0.006757, allocations: 4.312 kB / 0.7588 GB, free: 7.215 MB / 0.5887 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.653e-06/0.006764, allocations: 8.375 kB / 0.7588 GB, free: 7.207 MB / 0.5887 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006439/0.007408, allocations: 147.7 kB / 0.759 GB, free: 7.062 MB / 0.5887 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0003508/0.007759, allocations: 222.7 kB / 0.7592 GB, free: 6.812 MB / 0.5887 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003784/0.008137, allocations: 94.5 kB / 0.7593 GB, free: 6.711 MB / 0.5887 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003931/0.00853, allocations: 110 kB / 0.7594 GB, free: 6.602 MB / 0.5887 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.86e-05/0.008549, allocations: 4 kB / 0.7594 GB, free: 6.598 MB / 0.5887 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.75e-05/0.008586, allocations: 34.56 kB / 0.7594 GB, free: 6.555 MB / 0.5887 GB
Notification: Performance of pre-optimization done (n=11): time 1.383e-06/0.008588, allocations: 0 / 0.7594 GB, free: 6.555 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=11): time 0.001178/0.009766, allocations: 287.8 kB / 0.7597 GB, free: 6.27 MB / 0.5887 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.543e-05/0.009821, allocations: 55.41 kB / 0.7597 GB, free: 6.203 MB / 0.5887 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001267/0.009948, allocations: 115.2 kB / 0.7599 GB, free: 6.082 MB / 0.5887 GB
Notification: Performance of collectPreVariables (initialization): time 3.247e-05/0.00998, allocations: 25.7 kB / 0.7599 GB, free: 6.051 MB / 0.5887 GB
Notification: Performance of collectInitialEqns (initialization): time 6.746e-05/0.01005, allocations: 84.14 kB / 0.76 GB, free: 5.965 MB / 0.5887 GB
Notification: Performance of collectInitialBindings (initialization): time 4.638e-05/0.01009, allocations: 43.64 kB / 0.76 GB, free: 5.922 MB / 0.5887 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.376e-05/0.01018, allocations: 29.7 kB / 0.76 GB, free: 5.887 MB / 0.5887 GB
Notification: Performance of setup shared object (initialization): time 0.00017/0.01035, allocations: 322.8 kB / 0.7603 GB, free: 5.562 MB / 0.5887 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003323/0.01068, allocations: 67.94 kB / 0.7604 GB, free: 5.496 MB / 0.5887 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003485/0.01103, allocations: 98.94 kB / 0.7605 GB, free: 5.395 MB / 0.5887 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006965/0.01173, allocations: 182.8 kB / 0.7607 GB, free: 5.211 MB / 0.5887 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.094e-06/0.01173, allocations: 0 / 0.7607 GB, free: 5.211 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.000775/0.0125, allocations: 210.9 kB / 0.7609 GB, free: 5 MB / 0.5887 GB
Notification: Performance of prepare postOptimizeDAE: time 1.846e-05/0.01252, allocations: 4 kB / 0.7609 GB, free: 4.996 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0001526/0.01267, allocations: 7.875 kB / 0.7609 GB, free: 4.988 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.011e-05/0.01269, allocations: 4 kB / 0.7609 GB, free: 4.984 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000479/0.01317, allocations: 69.27 kB / 0.761 GB, free: 4.918 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.219e-05/0.01318, allocations: 4 kB / 0.761 GB, free: 4.914 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003376/0.01352, allocations: 55.88 kB / 0.761 GB, free: 4.859 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.621e-05/0.01354, allocations: 0 / 0.761 GB, free: 4.859 MB / 0.5887 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001233/0.01366, allocations: 121.8 kB / 0.7611 GB, free: 4.73 MB / 0.5887 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.082e-05/0.01368, allocations: 3.953 kB / 0.7611 GB, free: 4.727 MB / 0.5887 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0009845/0.01467, allocations: 308.8 kB / 0.7614 GB, free: 4.422 MB / 0.5887 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.504e-06/0.01467, allocations: 8.312 kB / 0.7614 GB, free: 4.414 MB / 0.5887 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.809e-06/0.01468, allocations: 0 / 0.7614 GB, free: 4.414 MB / 0.5887 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.47e-06/0.01468, allocations: 4 kB / 0.7614 GB, free: 4.41 MB / 0.5887 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002163/0.0149, allocations: 161.2 kB / 0.7616 GB, free: 4.223 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.573e-06/0.0149, allocations: 5.25 kB / 0.7616 GB, free: 4.219 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004472/0.01535, allocations: 75.94 kB / 0.7617 GB, free: 4.145 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.344e-06/0.01535, allocations: 0 / 0.7617 GB, free: 4.145 MB / 0.5887 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.79e-05/0.01538, allocations: 15.92 kB / 0.7617 GB, free: 4.129 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.643e-06/0.01538, allocations: 0 / 0.7617 GB, free: 4.129 MB / 0.5887 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.176e-06/0.01538, allocations: 3.938 kB / 0.7617 GB, free: 4.125 MB / 0.5887 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0008341/0.01622, allocations: 276.8 kB / 0.762 GB, free: 3.836 MB / 0.5887 GB
Notification: Performance of postOpt removeConstants (simulation): time 2.317e-05/0.01624, allocations: 19.89 kB / 0.762 GB, free: 3.816 MB / 0.5887 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.865e-05/0.01627, allocations: 4 kB / 0.762 GB, free: 3.812 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000324/0.0166, allocations: 55.94 kB / 0.762 GB, free: 3.758 MB / 0.5887 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.78e-05/0.01669, allocations: 27.31 kB / 0.7621 GB, free: 3.734 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.981e-05/0.01671, allocations: 8 kB / 0.7621 GB, free: 3.727 MB / 0.5887 GB
Notification: Performance of sorting global known variables: time 6.378e-05/0.01678, allocations: 88.7 kB / 0.7621 GB, free: 3.641 MB / 0.5887 GB
Notification: Performance of sort global known variables: time 7e-08/0.01678, allocations: 0 / 0.7621 GB, free: 3.641 MB / 0.5887 GB
Notification: Performance of remove unused functions: time 0.0002308/0.01701, allocations: 32 kB / 0.7622 GB, free: 3.609 MB / 0.5887 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000143/0.01715, allocations: 103.2 kB / 0.7623 GB, free: 3.496 MB / 0.5887 GB
Notification: Performance of simCode: created initialization part: time 0.0007812/0.01793, allocations: 187.8 kB / 0.7625 GB, free: 3.312 MB / 0.5887 GB
Notification: Performance of simCode: created event and clocks part: time 1.593e-06/0.01793, allocations: 4.062 kB / 0.7625 GB, free: 3.309 MB / 0.5887 GB
Notification: Performance of simCode: created simulation system equations: time 0.0003922/0.01833, allocations: 119 kB / 0.7626 GB, free: 3.195 MB / 0.5887 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002112/0.01854, allocations: 12.98 kB / 0.7626 GB, free: 3.184 MB / 0.5887 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006135/0.01915, allocations: 245.1 kB / 0.7628 GB, free: 2.918 MB / 0.5887 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 9.496e-05/0.01924, allocations: 88.58 kB / 0.7629 GB, free: 2.812 MB / 0.5887 GB
Notification: Performance of simCode: alias equations: time 0.0001374/0.01938, allocations: 36.47 kB / 0.7629 GB, free: 2.773 MB / 0.5887 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001144/0.0195, allocations: 20.5 kB / 0.763 GB, free: 2.754 MB / 0.5887 GB
Notification: Performance of SimCode: time 4.71e-07/0.0195, allocations: 0 / 0.763 GB, free: 2.754 MB / 0.5887 GB
Notification: Performance of Templates: time 0.006797/0.02629, allocations: 2.803 MB / 0.7657 GB, free: 15.99 MB / 0.6043 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 9.156704789958894]