Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001838/0.001838, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002127/0.002127, allocations: 169.9 kB / 22.45 MB, free: 2.105 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.639/1.639, allocations: 177.1 MB / 202.8 MB, free: 5.727 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.542/3.542, allocations: 274 MB / 0.5207 GB, free: 14.88 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.023e-06/2.023e-06, allocations: 0 / 0.7563 GB, free: 9.922 MB / 0.5887 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.885e-05/3.087e-05, allocations: 8.469 kB / 0.7563 GB, free: 9.914 MB / 0.5887 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.001563/0.001593, allocations: 0.5114 MB / 0.7568 GB, free: 9.414 MB / 0.5887 GB
Notification: Performance of NFInst.instExpressions: time 0.0001493/0.001743, allocations: 23.91 kB / 0.7568 GB, free: 9.391 MB / 0.5887 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.942e-05/0.001772, allocations: 0 / 0.7568 GB, free: 9.391 MB / 0.5887 GB
Notification: Performance of NFTyping.typeComponents: time 2.481e-05/0.001797, allocations: 0 / 0.7568 GB, free: 9.391 MB / 0.5887 GB
Notification: Performance of NFTyping.typeBindings: time 3.422e-05/0.001831, allocations: 1.312 kB / 0.7568 GB, free: 9.391 MB / 0.5887 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001012/0.001932, allocations: 13.67 kB / 0.7568 GB, free: 9.379 MB / 0.5887 GB
Notification: Performance of NFFlatten.flatten: time 6.071e-05/0.001993, allocations: 18.61 kB / 0.7568 GB, free: 9.363 MB / 0.5887 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.793e-05/0.002041, allocations: 11.55 kB / 0.7568 GB, free: 9.355 MB / 0.5887 GB
Notification: Performance of NFEvalConstants.evaluate: time 3.848e-05/0.002079, allocations: 9.422 kB / 0.7568 GB, free: 9.348 MB / 0.5887 GB
Notification: Performance of NFSimplifyModel.simplify: time 6.337e-05/0.002143, allocations: 9.406 kB / 0.7569 GB, free: 9.34 MB / 0.5887 GB
Notification: Performance of NFPackage.collectConstants: time 2.361e-05/0.002166, allocations: 0 / 0.7569 GB, free: 9.34 MB / 0.5887 GB
Notification: Performance of NFFlatten.collectFunctions: time 8.346e-06/0.002175, allocations: 0 / 0.7569 GB, free: 9.34 MB / 0.5887 GB
Notification: Performance of NFScalarize.scalarize: time 2.161e-05/0.002196, allocations: 7.984 kB / 0.7569 GB, free: 9.332 MB / 0.5887 GB
Notification: Performance of NFVerifyModel.verify: time 1.72e-05/0.002214, allocations: 1.312 kB / 0.7569 GB, free: 9.332 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 6.429e-05/0.002278, allocations: 21.22 kB / 0.7569 GB, free: 9.312 MB / 0.5887 GB
Notification: Performance of FrontEnd - DAE generated: time 2.054e-06/0.00228, allocations: 0 / 0.7569 GB, free: 9.312 MB / 0.5887 GB
Notification: Performance of FrontEnd: time 6.11e-07/0.002281, allocations: 4 kB / 0.7569 GB, free: 9.309 MB / 0.5887 GB
Notification: Performance of Transformations before backend: time 3.888e-06/0.002284, allocations: 0 / 0.7569 GB, free: 9.309 MB / 0.5887 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0004428/0.002727, allocations: 262.5 kB / 0.7571 GB, free: 9.02 MB / 0.5887 GB
Notification: Performance of prepare preOptimizeDAE: time 3.729e-05/0.002764, allocations: 8.031 kB / 0.7571 GB, free: 9.012 MB / 0.5887 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.853e-05/0.002803, allocations: 4.938 kB / 0.7571 GB, free: 9.008 MB / 0.5887 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001512/0.002954, allocations: 118.9 kB / 0.7573 GB, free: 8.867 MB / 0.5887 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.348e-05/0.002968, allocations: 384 / 0.7573 GB, free: 8.867 MB / 0.5887 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.546e-05/0.002993, allocations: 4.375 kB / 0.7573 GB, free: 8.863 MB / 0.5887 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001321/0.003125, allocations: 38.25 kB / 0.7573 GB, free: 8.82 MB / 0.5887 GB
Notification: Performance of preOpt findStateOrder (simulation): time 8.957e-06/0.003134, allocations: 4.125 kB / 0.7573 GB, free: 8.816 MB / 0.5887 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.815e-06/0.003142, allocations: 4.375 kB / 0.7573 GB, free: 8.812 MB / 0.5887 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.168e-06/0.003146, allocations: 384 / 0.7573 GB, free: 8.812 MB / 0.5887 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 3.668e-05/0.003183, allocations: 19.86 kB / 0.7573 GB, free: 8.793 MB / 0.5887 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001604/0.003343, allocations: 105.3 kB / 0.7574 GB, free: 8.66 MB / 0.5887 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003528/0.003696, allocations: 58.66 kB / 0.7575 GB, free: 8.594 MB / 0.5887 GB
Notification: Performance of preOpt resolveLoops (simulation): time 2.812e-05/0.003724, allocations: 12.86 kB / 0.7575 GB, free: 8.578 MB / 0.5887 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.13e-05/0.003735, allocations: 1.312 kB / 0.7575 GB, free: 8.578 MB / 0.5887 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.159e-05/0.003767, allocations: 38.5 kB / 0.7575 GB, free: 8.531 MB / 0.5887 GB
Notification: Performance of pre-optimization done (n=3): time 9.12e-07/0.003768, allocations: 0 / 0.7575 GB, free: 8.531 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=3): time 0.0001626/0.003931, allocations: 61.77 kB / 0.7576 GB, free: 8.465 MB / 0.5887 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.847e-05/0.003979, allocations: 55.41 kB / 0.7576 GB, free: 8.398 MB / 0.5887 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 8.972e-05/0.004069, allocations: 101.8 kB / 0.7577 GB, free: 8.289 MB / 0.5887 GB
Notification: Performance of collectPreVariables (initialization): time 1.992e-05/0.004089, allocations: 25.7 kB / 0.7578 GB, free: 8.258 MB / 0.5887 GB
Notification: Performance of collectInitialEqns (initialization): time 5.099e-05/0.00414, allocations: 88.12 kB / 0.7579 GB, free: 8.168 MB / 0.5887 GB
Notification: Performance of collectInitialBindings (initialization): time 2.572e-05/0.004165, allocations: 11.91 kB / 0.7579 GB, free: 8.156 MB / 0.5887 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 3.616e-05/0.004202, allocations: 13.72 kB / 0.7579 GB, free: 8.137 MB / 0.5887 GB
Notification: Performance of setup shared object (initialization): time 0.000167/0.004369, allocations: 322.8 kB / 0.7582 GB, free: 7.812 MB / 0.5887 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 1.979e-05/0.004388, allocations: 5.312 kB / 0.7582 GB, free: 7.809 MB / 0.5887 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.878e-05/0.004407, allocations: 8 kB / 0.7582 GB, free: 7.801 MB / 0.5887 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002998/0.004707, allocations: 72.75 kB / 0.7583 GB, free: 7.727 MB / 0.5887 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.663e-06/0.004709, allocations: 0 / 0.7583 GB, free: 7.727 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 0.000125/0.004834, allocations: 65.64 kB / 0.7583 GB, free: 7.656 MB / 0.5887 GB
Notification: Performance of prepare postOptimizeDAE: time 1.64e-05/0.00485, allocations: 6.031 kB / 0.7583 GB, free: 7.652 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.009e-06/0.004855, allocations: 384 / 0.7583 GB, free: 7.652 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.387e-05/0.004869, allocations: 0 / 0.7583 GB, free: 7.652 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 8.54e-05/0.004954, allocations: 12 kB / 0.7583 GB, free: 7.641 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.678e-06/0.004964, allocations: 4 kB / 0.7583 GB, free: 7.637 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 2.943e-05/0.004993, allocations: 11.88 kB / 0.7584 GB, free: 7.625 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.099e-06/0.004998, allocations: 4 kB / 0.7584 GB, free: 7.621 MB / 0.5887 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001275/0.005126, allocations: 122.5 kB / 0.7585 GB, free: 7.496 MB / 0.5887 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 8.767e-06/0.005135, allocations: 0 / 0.7585 GB, free: 7.496 MB / 0.5887 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.643e-05/0.005161, allocations: 7.688 kB / 0.7585 GB, free: 7.484 MB / 0.5887 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.312e-06/0.005163, allocations: 4 kB / 0.7585 GB, free: 7.48 MB / 0.5887 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.165e-06/0.005166, allocations: 0 / 0.7585 GB, free: 7.48 MB / 0.5887 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.098e-06/0.00517, allocations: 3.938 kB / 0.7585 GB, free: 7.477 MB / 0.5887 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001087/0.005279, allocations: 113.3 kB / 0.7586 GB, free: 7.336 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.02e-07/0.005279, allocations: 0 / 0.7586 GB, free: 7.336 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 6.536e-05/0.005345, allocations: 11.94 kB / 0.7586 GB, free: 7.324 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.553e-06/0.005346, allocations: 0 / 0.7586 GB, free: 7.324 MB / 0.5887 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.384e-06/0.005354, allocations: 0 / 0.7586 GB, free: 7.324 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.283e-06/0.005355, allocations: 0 / 0.7586 GB, free: 7.324 MB / 0.5887 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.21e-07/0.005356, allocations: 1.641 kB / 0.7586 GB, free: 7.324 MB / 0.5887 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001705/0.005526, allocations: 96.98 kB / 0.7587 GB, free: 7.211 MB / 0.5887 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.007e-05/0.005536, allocations: 3.953 kB / 0.7587 GB, free: 7.207 MB / 0.5887 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.365e-05/0.00555, allocations: 4 kB / 0.7587 GB, free: 7.203 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 2.541e-05/0.005575, allocations: 0 / 0.7587 GB, free: 7.203 MB / 0.5887 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.357e-05/0.005589, allocations: 4 kB / 0.7587 GB, free: 7.199 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.875e-06/0.005592, allocations: 0 / 0.7587 GB, free: 7.199 MB / 0.5887 GB
Notification: Performance of sorting global known variables: time 5.476e-05/0.005646, allocations: 87.31 kB / 0.7588 GB, free: 7.113 MB / 0.5887 GB
Notification: Performance of sort global known variables: time 7e-08/0.005647, allocations: 0 / 0.7588 GB, free: 7.113 MB / 0.5887 GB
Notification: Performance of remove unused functions: time 0.0001795/0.005826, allocations: 11.94 kB / 0.7588 GB, free: 7.102 MB / 0.5887 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001078/0.005934, allocations: 91.25 kB / 0.7589 GB, free: 7.004 MB / 0.5887 GB
Notification: Performance of simCode: created initialization part: time 9.406e-05/0.006028, allocations: 28.17 kB / 0.7589 GB, free: 6.977 MB / 0.5887 GB
Notification: Performance of simCode: created event and clocks part: time 1.212e-06/0.006029, allocations: 0 / 0.7589 GB, free: 6.977 MB / 0.5887 GB
Notification: Performance of simCode: created simulation system equations: time 2.724e-05/0.006056, allocations: 15.94 kB / 0.7589 GB, free: 6.961 MB / 0.5887 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000219/0.006275, allocations: 4 kB / 0.7589 GB, free: 6.957 MB / 0.5887 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0003908/0.006666, allocations: 142.2 kB / 0.7591 GB, free: 6.793 MB / 0.5887 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.805e-05/0.006724, allocations: 63.34 kB / 0.7591 GB, free: 6.711 MB / 0.5887 GB
Notification: Performance of simCode: alias equations: time 1.789e-05/0.006742, allocations: 4 kB / 0.7591 GB, free: 6.707 MB / 0.5887 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 2.29e-05/0.006765, allocations: 8.5 kB / 0.7592 GB, free: 6.699 MB / 0.5887 GB
Notification: Performance of SimCode: time 3.3e-07/0.006765, allocations: 0 / 0.7592 GB, free: 6.699 MB / 0.5887 GB
Notification: Performance of Templates: time 0.002704/0.009469, allocations: 346.7 kB / 0.7595 GB, free: 6.371 MB / 0.5887 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.80937287537381]