Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001287/0.001287, allocations: 80.3 kB / 19.18 MB, free: 2.516 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001397/0.001397, allocations: 161.4 kB / 22.45 MB, free: 5.375 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.491/1.491, allocations: 177.1 MB / 202.8 MB, free: 9.168 MB / 190.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1538/0.1538, allocations: 17.45 MB / 276.6 MB, free: 15.21 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.514e-06/2.514e-06, allocations: 0 / 412.1 MB, free: 4.285 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.353e-05/3.605e-05, allocations: 2.281 kB / 412.1 MB, free: 4.281 MB / 334.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.2975/0.2976, allocations: 74.41 MB / 486.5 MB, free: 5.555 MB / 366.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5448/0.8423, allocations: 191.2 MB / 0.6619 GB, free: 5.906 MB / 0.5137 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01498/0.8573, allocations: 229.5 kB / 0.6621 GB, free: 5.906 MB / 0.5137 GB
Notification: Performance of NFTyping.typeComponents: time 0.01587/0.8732, allocations: 4.513 MB / 0.6665 GB, free: 5.906 MB / 0.5137 GB
Notification: Performance of NFTyping.typeBindings: time 0.05384/0.927, allocations: 18.51 MB / 0.6846 GB, free: 2.238 MB / 0.5137 GB
Notification: Performance of NFTyping.typeClassSections: time 0.09319/1.02, allocations: 33.51 MB / 0.7173 GB, free: 9.027 MB / 0.5294 GB
Notification: Performance of NFFlatten.flatten: time 0.1035/1.124, allocations: 91.37 MB / 0.8065 GB, free: 8.371 MB / 0.5919 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.09479/1.218, allocations: 52.23 MB / 0.8575 GB, free: 7.078 MB / 0.6387 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.6915/1.91, allocations: 75.66 MB / 0.9314 GB, free: 40.41 MB / 0.6544 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.115/2.025, allocations: 50.96 MB / 0.9812 GB, free: 40.41 MB / 0.6544 GB
Notification: Performance of NFPackage.collectConstants: time 0.04859/2.074, allocations: 12.21 MB / 0.9931 GB, free: 28.49 MB / 0.6544 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1297/2.203, allocations: 34.09 MB / 1.026 GB, free: 2.41 MB / 0.6544 GB
Notification: Performance of NFScalarize.scalarize: time 0.08353/2.287, allocations: 26.96 MB / 1.053 GB, free: 13.05 MB / 0.67 GB
Notification: Performance of NFVerifyModel.verify: time 0.09498/2.382, allocations: 31.1 MB / 1.083 GB, free: 1.398 MB / 0.6857 GB
Notification: Performance of NFConvertDAE.convert: time 0.8883/3.27, allocations: 168.9 MB / 1.248 GB, free: 103.7 MB / 0.7483 GB
Notification: Performance of FrontEnd - DAE generated: time 6.863e-06/3.27, allocations: 0.5938 kB / 1.248 GB, free: 103.7 MB / 0.7483 GB
Notification: Performance of FrontEnd: time 1.583e-06/3.27, allocations: 2.078 kB / 1.248 GB, free: 103.7 MB / 0.7483 GB
Notification: Performance of Transformations before backend: time 0.003431/3.274, allocations: 0.625 kB / 1.248 GB, free: 103.7 MB / 0.7483 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2787/3.552, allocations: 71.17 MB / 1.317 GB, free: 71.78 MB / 0.7483 GB
Notification: Performance of prepare preOptimizeDAE: time 4.3e-05/3.552, allocations: 10.97 kB / 1.318 GB, free: 71.78 MB / 0.7483 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08669/3.639, allocations: 11.95 MB / 1.329 GB, free: 67.07 MB / 0.7483 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1007/3.74, allocations: 42.62 MB / 1.371 GB, free: 37.27 MB / 0.7483 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005957/3.746, allocations: 9.24 MB / 1.38 GB, free: 26.7 MB / 0.7483 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.04026/3.786, allocations: 4.596 MB / 1.384 GB, free: 22.11 MB / 0.7483 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.6211/4.407, allocations: 112.9 MB / 1.495 GB, free: 217.7 MB / 0.7639 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002129/4.409, allocations: 30.31 kB / 1.495 GB, free: 217.6 MB / 0.7639 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03336/4.443, allocations: 1.761 MB / 1.496 GB, free: 216.2 MB / 0.7639 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006752/4.443, allocations: 1.059 MB / 1.497 GB, free: 216.2 MB / 0.7639 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.3307/4.774, allocations: 153 MB / 1.647 GB, free: 89.59 MB / 0.7639 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.289/6.063, allocations: 389.1 MB / 2.027 GB, free: 16.65 MB / 0.7639 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.601/8.663, allocations: 0.6474 GB / 2.674 GB, free: 18.95 MB / 0.7639 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.4287/9.092, allocations: 60.06 MB / 2.733 GB, free: 208.3 MB / 0.7639 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.473/9.565, allocations: 254.7 MB / 2.982 GB, free: 18.03 MB / 0.7639 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002825/9.565, allocations: 338 kB / 2.982 GB, free: 17.69 MB / 0.7639 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.3926/9.958, allocations: 29.13 MB / 3.01 GB, free: 217 MB / 0.7639 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0002191/9.958, allocations: 0 / 3.01 GB, free: 217 MB / 0.7639 GB
Notification: Performance of matching and sorting (n=3387): time 2.552/12.51, allocations: 423.7 MB / 3.424 GB, free: 154.9 MB / 0.7639 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002565/12.51, allocations: 453.7 kB / 3.425 GB, free: 154.8 MB / 0.7639 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.06419/12.57, allocations: 30.72 MB / 3.455 GB, free: 137.1 MB / 0.7639 GB
Notification: Performance of collectPreVariables (initialization): time 0.01778/12.59, allocations: 0.5707 MB / 3.455 GB, free: 136.6 MB / 0.7639 GB
Notification: Performance of collectInitialEqns (initialization): time 0.02081/12.61, allocations: 21.54 MB / 3.476 GB, free: 118.7 MB / 0.7639 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02734/12.64, allocations: 12.27 MB / 3.488 GB, free: 106.6 MB / 0.7639 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.06301/12.7, allocations: 9.864 MB / 3.498 GB, free: 96.74 MB / 0.7639 GB
Notification: Performance of setup shared object (initialization): time 4.692e-05/12.7, allocations: 301.1 kB / 3.498 GB, free: 96.44 MB / 0.7639 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.06951/12.77, allocations: 39.05 MB / 3.536 GB, free: 57.36 MB / 0.7639 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.4202/13.19, allocations: 53.24 MB / 3.588 GB, free: 154.8 MB / 0.7639 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1657/13.36, allocations: 96.37 MB / 3.682 GB, free: 118.8 MB / 0.7639 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.00117/13.36, allocations: 125.6 kB / 3.682 GB, free: 118.8 MB / 0.7639 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.78/15.14, allocations: 257.1 MB / 3.934 GB, free: 140.9 MB / 0.7639 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0005271/15.14, allocations: 194.4 kB / 3.934 GB, free: 140.9 MB / 0.7639 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0008371/15.14, allocations: 448.5 kB / 3.934 GB, free: 140.9 MB / 0.7639 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1894/15.33, allocations: 73.71 MB / 4.006 GB, free: 120 MB / 0.7639 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0563/15.39, allocations: 11.18 MB / 4.017 GB, free: 117.4 MB / 0.7639 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.007/16.39, allocations: 309.6 MB / 4.319 GB, free: 110.3 MB / 0.7795 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.06204/16.46, allocations: 2.476 MB / 4.322 GB, free: 109 MB / 0.7795 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01919/16.48, allocations: 2.803 MB / 4.325 GB, free: 108.1 MB / 0.7795 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05265/16.53, allocations: 18.33 MB / 4.342 GB, free: 92.21 MB / 0.7795 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02126/16.55, allocations: 3.175 MB / 4.346 GB, free: 90.79 MB / 0.7795 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.32/17.87, allocations: 152.3 MB / 4.494 GB, free: 148.1 MB / 0.7795 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003406/17.87, allocations: 364.2 kB / 4.495 GB, free: 148.1 MB / 0.7795 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004846/17.87, allocations: 56.06 kB / 4.495 GB, free: 148.1 MB / 0.7795 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001202/17.87, allocations: 176.6 kB / 4.495 GB, free: 148.1 MB / 0.7795 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.394/19.27, allocations: 223.3 MB / 4.713 GB, free: 135.3 MB / 0.7795 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003401/19.27, allocations: 10.12 kB / 4.713 GB, free: 135.3 MB / 0.7795 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04709/19.31, allocations: 7.255 MB / 4.72 GB, free: 135.1 MB / 0.7795 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.1059/19.42, allocations: 39.74 MB / 4.759 GB, free: 133.9 MB / 0.7795 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01489/19.43, allocations: 1.451 MB / 4.76 GB, free: 133.9 MB / 0.7795 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3543/19.79, allocations: 155.6 MB / 4.912 GB, free: 81.82 MB / 0.7795 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.333e-06/19.79, allocations: 22.41 kB / 4.912 GB, free: 81.8 MB / 0.7795 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.34/21.13, allocations: 200.2 MB / 5.108 GB, free: 126.9 MB / 0.7795 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03724/21.16, allocations: 11.32 MB / 5.119 GB, free: 123.2 MB / 0.7795 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01854/21.18, allocations: 0.9188 MB / 5.12 GB, free: 122.6 MB / 0.7795 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04531/21.23, allocations: 1.544 MB / 5.121 GB, free: 122.1 MB / 0.7795 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.032/21.26, allocations: 4.681 MB / 5.126 GB, free: 121.4 MB / 0.7795 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01363/21.27, allocations: 1.387 MB / 5.127 GB, free: 121.2 MB / 0.7795 GB
Notification: Performance of sorting global known variables: time 0.04555/21.32, allocations: 20.8 MB / 5.147 GB, free: 113.5 MB / 0.7795 GB
Notification: Performance of sort global known variables: time 1.8e-07/21.32, allocations: 0 / 5.147 GB, free: 113.5 MB / 0.7795 GB
Notification: Performance of remove unused functions: time 0.1084/21.43, allocations: 20.22 MB / 5.167 GB, free: 110.7 MB / 0.7795 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03538/21.46, allocations: 11.22 MB / 5.178 GB, free: 107.4 MB / 0.7795 GB
Notification: Performance of simCode: created initialization part: time 0.213/21.68, allocations: 85.27 MB / 5.261 GB, free: 29.4 MB / 0.7795 GB
Notification: Performance of simCode: created event and clocks part: time 1.691e-05/21.68, allocations: 8.062 kB / 5.261 GB, free: 29.39 MB / 0.7795 GB
Notification: Performance of simCode: created simulation system equations: time 0.4951/22.17, allocations: 54.49 MB / 5.315 GB, free: 184.1 MB / 0.7952 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06912/22.24, allocations: 7.692 MB / 5.322 GB, free: 183.2 MB / 0.7952 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.3268/22.57, allocations: 121.8 MB / 5.441 GB, free: 147.3 MB / 0.7952 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.07478/22.64, allocations: 30.57 MB / 5.471 GB, free: 124.9 MB / 0.7952 GB
Notification: Performance of simCode: alias equations: time 0.0656/22.71, allocations: 15.45 MB / 5.486 GB, free: 114.3 MB / 0.7952 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02619/22.73, allocations: 4.244 MB / 5.49 GB, free: 110.8 MB / 0.7952 GB
Notification: Performance of SimCode: time 7.01e-07/22.73, allocations: 0 / 5.49 GB, free: 110.8 MB / 0.7952 GB
Notification: Performance of Templates: time 2.605/25.34, allocations: 1.014 GB / 6.505 GB, free: 18.17 MB / 0.8577 GB
"
[Timeout remaining time 635]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 68.30154862999916]
Failed to read output from testmodel.py, exit status != 0:
25.350655186921358 25.360026233 22.087112816
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f9278f951e0>