Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001582/0.001582, allocations: 84.05 kB / 19.18 MB, free: 2.523 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001739/0.001739, allocations: 170 kB / 22.46 MB, free: 5.359 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.461/1.461, allocations: 177.1 MB / 202.8 MB, free: 9.188 MB / 190.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1403/0.1403, allocations: 17.45 MB / 276.6 MB, free: 15.22 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.633e-06/1.633e-06, allocations: 0 / 412.1 MB, free: 4.301 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.714e-05/2.877e-05, allocations: 2.281 kB / 412.1 MB, free: 4.297 MB / 334.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.05722/0.05725, allocations: 35.01 MB / 447.1 MB, free: 1.375 MB / 366.1 MB
Notification: Performance of NFInst.instExpressions: time 0.227/0.2843, allocations: 10.88 MB / 458 MB, free: 30.66 MB / 366.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00292/0.2872, allocations: 109.1 kB / 458.1 MB, free: 30.61 MB / 366.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.005934/0.2931, allocations: 2.082 MB / 460.2 MB, free: 29.88 MB / 366.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.00711/0.3002, allocations: 1.962 MB / 462.1 MB, free: 28.6 MB / 366.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009322/0.3095, allocations: 4.307 MB / 466.4 MB, free: 26.02 MB / 366.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.009032/0.3186, allocations: 4.795 MB / 471.2 MB, free: 23.62 MB / 366.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001619/0.3202, allocations: 0.8215 MB / 472.1 MB, free: 23.18 MB / 366.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005282/0.3255, allocations: 2.629 MB / 474.7 MB, free: 21.62 MB / 366.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.00358/0.3291, allocations: 2.088 MB / 476.8 MB, free: 20.47 MB / 366.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.0005846/0.3296, allocations: 406.9 kB / 477.2 MB, free: 20.47 MB / 366.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006226/0.3359, allocations: 2.147 MB / 479.3 MB, free: 19.69 MB / 366.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0009593/0.3368, allocations: 1.375 MB / 480.7 MB, free: 18.68 MB / 366.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.002083/0.3389, allocations: 1.502 MB / 482.2 MB, free: 17.88 MB / 366.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.009766/0.3487, allocations: 7.469 MB / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.42e-06/0.3487, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of FrontEnd: time 1.633e-06/0.3487, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of Transformations before backend: time 0.0001817/0.3489, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.01016/0.359, allocations: 5.421 MB / 495.1 MB, free: 5.277 MB / 366.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.636e-05/0.3591, allocations: 8.031 kB / 495.1 MB, free: 5.27 MB / 366.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003017/0.3621, allocations: 1.102 MB / 496.2 MB, free: 4.168 MB / 366.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003492/0.3656, allocations: 2.522 MB / 498.7 MB, free: 1.562 MB / 366.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003947/0.366, allocations: 0.6336 MB / 499.4 MB, free: 0.8555 MB / 366.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004657/0.3664, allocations: 399 kB / 499.7 MB, free: 480 kB / 366.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02035/0.3868, allocations: 15.38 MB / 0.5031 GB, free: 1.055 MB / 382.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.83e-05/0.3869, allocations: 192 / 0.5031 GB, free: 1.055 MB / 382.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003551/0.3872, allocations: 163 kB / 0.5032 GB, free: 0.8984 MB / 382.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006836/0.3879, allocations: 0.5948 MB / 0.5038 GB, free: 308 kB / 382.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03539/0.4233, allocations: 27.37 MB / 0.5305 GB, free: 4.918 MB / 414.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05551/0.4788, allocations: 25.91 MB / 0.5558 GB, free: 10.94 MB / 446.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.006516/0.4853, allocations: 3.585 MB / 0.5593 GB, free: 7.363 MB / 446.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.005066/0.4904, allocations: 3.058 MB / 0.5623 GB, free: 4.301 MB / 446.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03107/0.5214, allocations: 15.36 MB / 0.5773 GB, free: 4.91 MB / 462.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.54e-05/0.5215, allocations: 52.5 kB / 0.5774 GB, free: 4.848 MB / 462.1 MB
Notification: Performance of pre-optimization done (n=227): time 4.618e-06/0.5215, allocations: 0 / 0.5774 GB, free: 4.848 MB / 462.1 MB
Notification: Performance of matching and sorting (n=324): time 0.09305/0.6146, allocations: 29.05 MB / 0.6057 GB, free: 7.75 MB / 494.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 6.92e-05/0.6146, allocations: 77.41 kB / 0.6058 GB, free: 7.664 MB / 494.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.004099/0.6187, allocations: 2.322 MB / 0.6081 GB, free: 5.332 MB / 494.1 MB
Notification: Performance of collectPreVariables (initialization): time 0.001035/0.6198, allocations: 65.7 kB / 0.6081 GB, free: 5.262 MB / 494.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001932/0.6217, allocations: 2.285 MB / 0.6104 GB, free: 2.953 MB / 494.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001771/0.6235, allocations: 1.107 MB / 0.6114 GB, free: 1.836 MB / 494.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.003022/0.6265, allocations: 0.9964 MB / 0.6124 GB, free: 0.832 MB / 494.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001272/0.6266, allocations: 307.8 kB / 0.6127 GB, free: 0.5312 MB / 494.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.007701/0.6343, allocations: 4.204 MB / 0.6168 GB, free: 12.32 MB / 0.4981 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.008774/0.6431, allocations: 5.375 MB / 0.6221 GB, free: 6.438 MB / 0.4981 GB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.6478/1.291, allocations: 74.04 MB / 0.6944 GB, free: 121.6 MB / 0.4981 GB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.712125137448311]
Failed to read output from testmodel.py, exit status != 0:
1.312927182763815 1.32099739 0.970065827
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f82fb56d1e0>