Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001403/0.001403, allocations: 79.86 kB / 19.18 MB, free: 2.527 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00148/0.00148, allocations: 163.1 kB / 22.46 MB, free: 5.359 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.484/1.484, allocations: 177.1 MB / 202.8 MB, free: 9.168 MB / 190.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.147/0.147, allocations: 17.45 MB / 276.6 MB, free: 15.21 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.363e-06/1.363e-06, allocations: 0 / 412.1 MB, free: 4.273 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.875e-05/3.012e-05, allocations: 2.281 kB / 412.1 MB, free: 4.27 MB / 334.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.04889/0.04892, allocations: 35.01 MB / 447.1 MB, free: 1.359 MB / 366.1 MB
Notification: Performance of NFInst.instExpressions: time 0.2036/0.2525, allocations: 10.88 MB / 458 MB, free: 30.68 MB / 366.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002275/0.2548, allocations: 108.6 kB / 458.1 MB, free: 30.62 MB / 366.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.004967/0.2598, allocations: 2.084 MB / 460.2 MB, free: 29.88 MB / 366.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.007292/0.2671, allocations: 1.961 MB / 462.1 MB, free: 28.61 MB / 366.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009528/0.2766, allocations: 4.302 MB / 466.4 MB, free: 26.02 MB / 366.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.008003/0.2846, allocations: 4.795 MB / 471.2 MB, free: 23.63 MB / 366.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001498/0.2861, allocations: 0.8205 MB / 472.1 MB, free: 23.18 MB / 366.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004388/0.2905, allocations: 2.632 MB / 474.7 MB, free: 21.62 MB / 366.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002897/0.2934, allocations: 2.097 MB / 476.8 MB, free: 20.46 MB / 366.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.0005829/0.2939, allocations: 405.7 kB / 477.2 MB, free: 20.46 MB / 366.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006017/0.3, allocations: 2.131 MB / 479.3 MB, free: 19.7 MB / 366.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0008522/0.3008, allocations: 1.378 MB / 480.7 MB, free: 18.69 MB / 366.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.001687/0.3025, allocations: 1.496 MB / 482.2 MB, free: 17.89 MB / 366.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.008601/0.3111, allocations: 7.484 MB / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.991e-06/0.3111, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of FrontEnd: time 1.833e-06/0.3111, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Performance of Transformations before backend: time 9.563e-05/0.3112, allocations: 0 / 489.7 MB, free: 10.74 MB / 366.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.008226/0.3194, allocations: 5.418 MB / 495.1 MB, free: 5.281 MB / 366.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.187e-05/0.3195, allocations: 8.031 kB / 495.1 MB, free: 5.273 MB / 366.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002689/0.3222, allocations: 1.098 MB / 496.2 MB, free: 4.176 MB / 366.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003013/0.3252, allocations: 2.522 MB / 498.7 MB, free: 1.57 MB / 366.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003579/0.3255, allocations: 0.6336 MB / 499.4 MB, free: 0.8633 MB / 366.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004469/0.326, allocations: 402.9 kB / 499.7 MB, free: 484 kB / 366.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01967/0.3457, allocations: 15.38 MB / 0.503 GB, free: 1.062 MB / 382.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.825e-05/0.3457, allocations: 192 / 0.503 GB, free: 1.062 MB / 382.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003607/0.3461, allocations: 160.3 kB / 0.5032 GB, free: 0.9062 MB / 382.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007518/0.3468, allocations: 0.6013 MB / 0.5038 GB, free: 312 kB / 382.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03139/0.3782, allocations: 27.37 MB / 0.5305 GB, free: 4.922 MB / 414.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.04707/0.4253, allocations: 25.91 MB / 0.5558 GB, free: 10.94 MB / 446.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.005937/0.4312, allocations: 3.579 MB / 0.5593 GB, free: 7.371 MB / 446.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.004567/0.4358, allocations: 3.066 MB / 0.5623 GB, free: 4.301 MB / 446.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.02824/0.464, allocations: 15.36 MB / 0.5773 GB, free: 4.914 MB / 462.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.749e-05/0.4641, allocations: 52.5 kB / 0.5774 GB, free: 4.852 MB / 462.1 MB
Notification: Performance of pre-optimization done (n=227): time 4.99e-06/0.4641, allocations: 0 / 0.5774 GB, free: 4.852 MB / 462.1 MB
Notification: Performance of matching and sorting (n=324): time 0.09241/0.5565, allocations: 29.05 MB / 0.6057 GB, free: 7.754 MB / 494.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.741e-05/0.5566, allocations: 77.41 kB / 0.6058 GB, free: 7.668 MB / 494.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.005206/0.5618, allocations: 2.326 MB / 0.6081 GB, free: 5.332 MB / 494.1 MB
Notification: Performance of collectPreVariables (initialization): time 0.001395/0.5632, allocations: 65.7 kB / 0.6081 GB, free: 5.262 MB / 494.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.002275/0.5655, allocations: 2.292 MB / 0.6104 GB, free: 2.945 MB / 494.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.002522/0.568, allocations: 1.111 MB / 0.6115 GB, free: 1.824 MB / 494.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.003542/0.5715, allocations: 0.9886 MB / 0.6124 GB, free: 0.8281 MB / 494.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001808/0.5717, allocations: 301.1 kB / 0.6127 GB, free: 0.5312 MB / 494.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.007538/0.5792, allocations: 4.207 MB / 0.6168 GB, free: 12.32 MB / 0.4981 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.008535/0.5878, allocations: 5.379 MB / 0.6221 GB, free: 6.438 MB / 0.4981 GB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.5988/1.187, allocations: 74.04 MB / 0.6944 GB, free: 121.6 MB / 0.4981 GB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.6769343465566635]
Failed to read output from testmodel.py, exit status != 0:
1.2067102268338203 1.2142636759999998 0.901048385
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f50239d11e0>