Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001304/0.001304, allocations: 80.22 kB / 19.18 MB, free: 2.516 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002135/0.002135, allocations: 161 kB / 22.46 MB, free: 5.375 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.453/1.453, allocations: 177.1 MB / 202.8 MB, free: 9.164 MB / 190.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1311/0.1311, allocations: 17.45 MB / 276.6 MB, free: 15.2 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.613e-06/1.613e-06, allocations: 0 / 412.1 MB, free: 4.297 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.075e-05/3.236e-05, allocations: 2.281 kB / 412.1 MB, free: 4.293 MB / 334.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.05131/0.05134, allocations: 35.36 MB / 447.4 MB, free: 1.031 MB / 366.1 MB
Notification: Performance of NFInst.instExpressions: time 0.2384/0.2897, allocations: 11.11 MB / 458.6 MB, free: 30.4 MB / 366.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003268/0.293, allocations: 96.16 kB / 458.7 MB, free: 30.36 MB / 366.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.006228/0.2992, allocations: 2.193 MB / 460.8 MB, free: 29.42 MB / 366.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.007576/0.3068, allocations: 2.013 MB / 462.9 MB, free: 28.11 MB / 366.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.009744/0.3165, allocations: 4.359 MB / 467.2 MB, free: 25.52 MB / 366.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007687/0.3242, allocations: 5.036 MB / 472.3 MB, free: 23.03 MB / 366.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002608/0.3268, allocations: 1.331 MB / 473.6 MB, free: 22.19 MB / 366.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.006261/0.3331, allocations: 3.142 MB / 476.7 MB, free: 20.21 MB / 366.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004946/0.338, allocations: 2.404 MB / 479.1 MB, free: 18.84 MB / 366.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.001492/0.3395, allocations: 0.5301 MB / 479.7 MB, free: 18.84 MB / 366.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.007258/0.3468, allocations: 2.318 MB / 482 MB, free: 18.04 MB / 366.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.002214/0.349, allocations: 1.699 MB / 483.7 MB, free: 16.7 MB / 366.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.004609/0.3536, allocations: 1.789 MB / 485.5 MB, free: 14.9 MB / 366.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.01491/0.3685, allocations: 8.987 MB / 494.5 MB, free: 5.895 MB / 366.1 MB
Notification: Performance of FrontEnd - DAE generated: time 6.061e-06/0.3685, allocations: 4 kB / 494.5 MB, free: 5.891 MB / 366.1 MB
Notification: Performance of FrontEnd: time 1.513e-06/0.3685, allocations: 0 / 494.5 MB, free: 5.891 MB / 366.1 MB
Notification: Performance of Transformations before backend: time 0.0002921/0.3688, allocations: 0 / 494.5 MB, free: 5.891 MB / 366.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.0136/0.3824, allocations: 6.118 MB / 0.4888 GB, free: 15.73 MB / 382.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.579e-05/0.3824, allocations: 12.03 kB / 0.4889 GB, free: 15.71 MB / 382.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004622/0.3871, allocations: 1.329 MB / 0.4901 GB, free: 14.39 MB / 382.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.004771/0.3918, allocations: 2.635 MB / 0.4927 GB, free: 11.69 MB / 382.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000706/0.3925, allocations: 0.7321 MB / 0.4934 GB, free: 10.87 MB / 382.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0007736/0.3933, allocations: 460.3 kB / 0.4939 GB, free: 10.42 MB / 382.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02103/0.4144, allocations: 14.52 MB / 0.5081 GB, free: 11.85 MB / 398.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 7.347e-05/0.4144, allocations: 6.859 kB / 0.5081 GB, free: 11.84 MB / 398.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0004137/0.4148, allocations: 186.8 kB / 0.5082 GB, free: 11.66 MB / 398.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006953/0.4155, allocations: 0.5527 MB / 0.5088 GB, free: 11.11 MB / 398.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02935/0.4449, allocations: 23.24 MB / 0.5315 GB, free: 3.859 MB / 414.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05442/0.4993, allocations: 29.47 MB / 0.5603 GB, free: 6.332 MB / 446.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.008197/0.5075, allocations: 4.565 MB / 0.5647 GB, free: 1.766 MB / 446.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.006637/0.5141, allocations: 3.946 MB / 0.5686 GB, free: 13.82 MB / 462.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03403/0.5482, allocations: 19.86 MB / 0.588 GB, free: 9.914 MB / 478.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.568e-05/0.5482, allocations: 52.56 kB / 0.588 GB, free: 9.852 MB / 478.1 MB
Notification: Performance of pre-optimization done (n=289): time 5.12e-06/0.5482, allocations: 0 / 0.588 GB, free: 9.852 MB / 478.1 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.0081340968608856]
Failed to read output from testmodel.py, exit status != 0:
0.6003117561340332 0.616944738 0.24498397300000002
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7fb5cc8c11e0>