Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007728/0.0007728, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008758/0.0008758, allocations: 165.9 kB / 22.46 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.948/0.948, allocations: 177.1 MB / 202.8 MB, free: 5.738 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.4/1.4, allocations: 273.5 MB / 0.5202 GB, free: 14.97 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Pharmacokinetic_Models_PBPK_whole_body",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Pharmacokinetic_Models_PBPK_whole_body",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.144e-06/2.144e-06, allocations: 0 / 0.7554 GB, free: 10.86 MB / 0.6355 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.028e-05/2.242e-05, allocations: 2.281 kB / 0.7554 GB, free: 10.86 MB / 0.6355 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.01242/0.01245, allocations: 10.26 MB / 0.7654 GB, free: 0.6211 MB / 0.6355 GB Notification: Performance of NFInst.instExpressions: time 0.004341/0.01679, allocations: 2.457 MB / 0.7678 GB, free: 14.17 MB / 0.6512 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001237/0.01802, allocations: 20 kB / 0.7678 GB, free: 14.15 MB / 0.6512 GB Notification: Performance of NFTyping.typeComponents: time 0.0006512/0.01868, allocations: 301 kB / 0.7681 GB, free: 13.86 MB / 0.6512 GB Notification: Performance of NFTyping.typeBindings: time 0.001646/0.02032, allocations: 0.7782 MB / 0.7689 GB, free: 13.07 MB / 0.6512 GB Notification: Performance of NFTyping.typeClassSections: time 0.001077/0.0214, allocations: 0.5965 MB / 0.7695 GB, free: 12.47 MB / 0.6512 GB Notification: Performance of NFFlatten.flatten: time 0.002377/0.02378, allocations: 2.87 MB / 0.7723 GB, free: 9.586 MB / 0.6512 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002393/0.02617, allocations: 3.005 MB / 0.7752 GB, free: 6.527 MB / 0.6512 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003034/0.0292, allocations: 2.555 MB / 0.7777 GB, free: 3.969 MB / 0.6512 GB Notification: Performance of NFSimplifyModel.simplify: time 0.00273/0.03193, allocations: 1.96 MB / 0.7796 GB, free: 2.004 MB / 0.6512 GB Notification: Performance of NFPackage.collectConstants: time 0.0007759/0.03271, allocations: 424 kB / 0.78 GB, free: 1.59 MB / 0.6512 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0007352/0.03344, allocations: 428 kB / 0.7804 GB, free: 1.172 MB / 0.6512 GB Notification: Performance of NFScalarize.scalarize: time 0.0005805/0.03402, allocations: 0.9233 MB / 0.7813 GB, free: 252 kB / 0.6512 GB Notification: Performance of NFVerifyModel.verify: time 0.001759/0.03578, allocations: 1.294 MB / 0.7826 GB, free: 14.95 MB / 0.6668 GB Notification: Performance of NFConvertDAE.convert: time 0.004725/0.04051, allocations: 3.772 MB / 0.7863 GB, free: 11.16 MB / 0.6668 GB Notification: Performance of FrontEnd - DAE generated: time 6.242e-06/0.04052, allocations: 0 / 0.7863 GB, free: 11.16 MB / 0.6668 GB Notification: Performance of FrontEnd: time 2.304e-06/0.04052, allocations: 0 / 0.7863 GB, free: 11.16 MB / 0.6668 GB Notification: Performance of Transformations before backend: time 0.0001179/0.04064, allocations: 0 / 0.7863 GB, free: 11.16 MB / 0.6668 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.007836/0.04847, allocations: 2.811 MB / 0.789 GB, free: 8.254 MB / 0.6668 GB Notification: Performance of prepare preOptimizeDAE: time 5.524e-05/0.04853, allocations: 8.031 kB / 0.789 GB, free: 8.246 MB / 0.6668 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0005098/0.04904, allocations: 257.5 kB / 0.7893 GB, free: 7.984 MB / 0.6668 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006815/0.04972, allocations: 231.5 kB / 0.7895 GB, free: 7.758 MB / 0.6668 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.002406/0.05212, allocations: 1.128 MB / 0.7906 GB, free: 6.598 MB / 0.6668 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001538/0.05228, allocations: 135.9 kB / 0.7907 GB, free: 6.465 MB / 0.6668 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0007156/0.05299, allocations: 200 kB / 0.7909 GB, free: 6.273 MB / 0.6668 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003983/0.05698, allocations: 3.779 MB / 0.7946 GB, free: 2.359 MB / 0.6668 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.011e-05/0.05703, allocations: 19.91 kB / 0.7946 GB, free: 2.34 MB / 0.6668 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002158/0.05724, allocations: 79.94 kB / 0.7947 GB, free: 2.262 MB / 0.6668 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.265e-05/0.05726, allocations: 40 kB / 0.7947 GB, free: 2.223 MB / 0.6668 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003844/0.06111, allocations: 3.499 MB / 0.7982 GB, free: 14.69 MB / 0.6824 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01048/0.07159, allocations: 7.97 MB / 0.8059 GB, free: 6.648 MB / 0.6824 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002328/0.07391, allocations: 1.746 MB / 0.8076 GB, free: 4.875 MB / 0.6824 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001601/0.07551, allocations: 1.247 MB / 0.8089 GB, free: 3.602 MB / 0.6824 GB Notification: Performance of preOpt evalFunc (simulation): time 6.428e-05/0.07558, allocations: 26 kB / 0.8089 GB, free: 3.578 MB / 0.6824 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.002268/0.07785, allocations: 2.139 MB / 0.811 GB, free: 1.348 MB / 0.6824 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.004033/0.08188, allocations: 1.8 MB / 0.8127 GB, free: 15.59 MB / 0.698 GB Notification: Performance of pre-optimization done (n=198): time 5.53e-06/0.08188, allocations: 0 / 0.8127 GB, free: 15.59 MB / 0.698 GB Notification: Performance of matching and sorting (n=202): time 0.01563/0.09751, allocations: 7.919 MB / 0.8205 GB, free: 7.535 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001725/0.09768, allocations: 413.7 kB / 0.8209 GB, free: 7.047 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0013/0.09898, allocations: 1.068 MB / 0.8219 GB, free: 5.965 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 0.0002381/0.09922, allocations: 81.69 kB / 0.822 GB, free: 5.879 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.000465/0.09969, allocations: 0.6904 MB / 0.8227 GB, free: 5.18 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0006599/0.1003, allocations: 0.7205 MB / 0.8234 GB, free: 4.453 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007714/0.1011, allocations: 0.5817 MB / 0.8239 GB, free: 3.863 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 8.037e-05/0.1012, allocations: 305.1 kB / 0.8242 GB, free: 3.562 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002124/0.1033, allocations: 1.563 MB / 0.8257 GB, free: 1.941 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002376/0.1057, allocations: 2.083 MB / 0.8278 GB, free: 15.58 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.06442/0.1701, allocations: 24.77 MB / 0.852 GB, free: 6.684 MB / 0.7293 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.417e-05/0.1701, allocations: 0 / 0.852 GB, free: 6.684 MB / 0.7293 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.006564/0.1767, allocations: 4.15 MB / 0.856 GB, free: 2.414 MB / 0.7293 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001174/0.1768, allocations: 263.3 kB / 0.8563 GB, free: 2.102 MB / 0.7293 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.9e-05/0.1768, allocations: 12 kB / 0.8563 GB, free: 2.09 MB / 0.7293 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.181e-05/0.1769, allocations: 24 kB / 0.8563 GB, free: 2.066 MB / 0.7293 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001944/0.1788, allocations: 0.8227 MB / 0.8571 GB, free: 1.242 MB / 0.7293 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.664e-05/0.1788, allocations: 39.89 kB / 0.8571 GB, free: 1.203 MB / 0.7293 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001635/0.1805, allocations: 107.9 kB / 0.8573 GB, free: 1.098 MB / 0.7293 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003247/0.1808, allocations: 215.7 kB / 0.8575 GB, free: 0.8867 MB / 0.7293 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001311/0.1821, allocations: 0.649 MB / 0.8581 GB, free: 220 kB / 0.7293 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004288/0.1825, allocations: 170.9 kB / 0.8583 GB, free: 48 kB / 0.7293 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.005196/0.1877, allocations: 3.573 MB / 0.8617 GB, free: 12.46 MB / 0.7449 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.251e-05/0.1877, allocations: 20 kB / 0.8618 GB, free: 12.44 MB / 0.7449 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 6.853e-06/0.1878, allocations: 0 / 0.8618 GB, free: 12.44 MB / 0.7449 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.48e-05/0.1878, allocations: 15.84 kB / 0.8618 GB, free: 12.43 MB / 0.7449 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007049/0.1948, allocations: 4.75 MB / 0.8664 GB, free: 7.582 MB / 0.7449 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.513e-06/0.1948, allocations: 0 / 0.8664 GB, free: 7.582 MB / 0.7449 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001498/0.1963, allocations: 455.2 kB / 0.8668 GB, free: 7.137 MB / 0.7449 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.065e-05/0.1963, allocations: 12.03 kB / 0.8669 GB, free: 7.125 MB / 0.7449 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001794/0.1965, allocations: 107.8 kB / 0.867 GB, free: 7.02 MB / 0.7449 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.985e-06/0.1965, allocations: 8 kB / 0.867 GB, free: 7.012 MB / 0.7449 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.385e-06/0.1965, allocations: 0 / 0.867 GB, free: 7.012 MB / 0.7449 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.006497/0.203, allocations: 4.751 MB / 0.8716 GB, free: 2.164 MB / 0.7449 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0009759/0.204, allocations: 414.4 kB / 0.872 GB, free: 1.758 MB / 0.7449 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003476/0.2044, allocations: 52 kB / 0.8721 GB, free: 1.707 MB / 0.7449 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001046/0.2054, allocations: 95.91 kB / 0.8721 GB, free: 1.613 MB / 0.7449 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002703/0.2057, allocations: 173.6 kB / 0.8723 GB, free: 1.441 MB / 0.7449 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001469/0.2058, allocations: 111.8 kB / 0.8724 GB, free: 1.332 MB / 0.7449 GB Notification: Performance of sorting global known variables: time 0.0008477/0.2067, allocations: 0.7686 MB / 0.8732 GB, free: 0.5586 MB / 0.7449 GB Notification: Performance of sort global known variables: time 3.2e-07/0.2067, allocations: 0 / 0.8732 GB, free: 0.5586 MB / 0.7449 GB Notification: Performance of remove unused functions: time 0.2907/0.4973, allocations: 0.6293 MB / 0.8738 GB, free: 149.7 MB / 0.7449 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.006037/0.5034, allocations: 5.401 MB / 0.8791 GB, free: 147.6 MB / 0.7449 GB Notification: Performance of simCode: created initialization part: time 0.004069/0.5074, allocations: 3.644 MB / 0.8826 GB, free: 145.6 MB / 0.7449 GB Notification: Performance of simCode: created event and clocks part: time 3.917e-06/0.5074, allocations: 1.344 kB / 0.8826 GB, free: 145.6 MB / 0.7449 GB Notification: Performance of simCode: created simulation system equations: time 0.001694/0.5091, allocations: 1.592 MB / 0.8842 GB, free: 144.8 MB / 0.7449 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001777/0.5109, allocations: 0.4901 MB / 0.8847 GB, free: 144.7 MB / 0.7449 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.02468/0.5356, allocations: 23 MB / 0.9071 GB, free: 132.2 MB / 0.7449 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0006332/0.5362, allocations: 0.771 MB / 0.9079 GB, free: 132.1 MB / 0.7449 GB Notification: Performance of simCode: alias equations: time 0.001816/0.538, allocations: 0.5025 MB / 0.9084 GB, free: 132 MB / 0.7449 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001355/0.5394, allocations: 0.9255 MB / 0.9093 GB, free: 131.5 MB / 0.7449 GB Notification: Performance of SimCode: time 1.573e-06/0.5394, allocations: 1.438 kB / 0.9093 GB, free: 131.5 MB / 0.7449 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.135/0.6744, allocations: 60.91 MB / 0.9687 GB, free: 97.08 MB / 0.7449 GB Notification: Performance of buildModelFMU: Generate platform static: time 8.803/9.477, allocations: 14.64 kB / 0.9688 GB, free: 97.07 MB / 0.7449 GB " [Timeout remaining time 650] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Pharmacokinetic_Models_PBPK_whole_body_fmu --startTime=0 --stopTime=86400 --stepSize=173.146 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_Pharmacokinetic_Models_PBPK_whole_body.fmu) > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy_res.csv --start-time 0 --stop-time 86400 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 173.146 ../Pharmacolibrary_Pharmacolibrary_Pharmacokinetic_Models_PBPK_whole_body.fmu) > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body_fmpy.pipe 2>&1) [Timeout 52.5] [Calling sys.exit(0), Time elapsed: 13.565794162452221]