Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007944/0.0007944, allocations: 80.44 kB / 19.17 MB, free: 0.7344 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001585/0.001585, allocations: 166.3 kB / 22.46 MB, free: 2.098 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9285/0.9285, allocations: 177.1 MB / 202.8 MB, free: 5.738 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.45/1.45, allocations: 273.5 MB / 0.5202 GB, free: 15.02 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.723e-06/1.723e-06, allocations: 0 / 0.7553 GB, free: 10.97 MB / 0.6355 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.735e-05/1.908e-05, allocations: 6.281 kB / 0.7553 GB, free: 10.96 MB / 0.6355 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005804/0.005823, allocations: 6.043 MB / 0.7612 GB, free: 4.965 MB / 0.6355 GB Notification: Performance of NFInst.instExpressions: time 0.002514/0.008337, allocations: 1.989 MB / 0.7632 GB, free: 2.973 MB / 0.6355 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003078/0.008645, allocations: 19.94 kB / 0.7632 GB, free: 2.953 MB / 0.6355 GB Notification: Performance of NFTyping.typeComponents: time 0.0005399/0.009185, allocations: 277.7 kB / 0.7634 GB, free: 2.68 MB / 0.6355 GB Notification: Performance of NFTyping.typeBindings: time 0.0005333/0.009718, allocations: 480 kB / 0.7639 GB, free: 2.207 MB / 0.6355 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008151/0.01053, allocations: 0.538 MB / 0.7644 GB, free: 1.668 MB / 0.6355 GB Notification: Performance of NFFlatten.flatten: time 0.001265/0.0118, allocations: 1.797 MB / 0.7662 GB, free: 15.86 MB / 0.6512 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003726/0.01217, allocations: 251.7 kB / 0.7664 GB, free: 15.61 MB / 0.6512 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0007594/0.01293, allocations: 0.9123 MB / 0.7673 GB, free: 14.69 MB / 0.6512 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004634/0.01339, allocations: 0.518 MB / 0.7678 GB, free: 14.17 MB / 0.6512 GB Notification: Performance of NFPackage.collectConstants: time 0.0001366/0.01353, allocations: 168 kB / 0.768 GB, free: 14.01 MB / 0.6512 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000367/0.0139, allocations: 319.3 kB / 0.7683 GB, free: 13.7 MB / 0.6512 GB Notification: Performance of NFScalarize.scalarize: time 0.0002511/0.01415, allocations: 370.7 kB / 0.7686 GB, free: 13.33 MB / 0.6512 GB Notification: Performance of NFVerifyModel.verify: time 0.0005553/0.0147, allocations: 0.5183 MB / 0.7691 GB, free: 12.81 MB / 0.6512 GB Notification: Performance of NFConvertDAE.convert: time 0.001618/0.01632, allocations: 2.205 MB / 0.7713 GB, free: 10.6 MB / 0.6512 GB Notification: Performance of FrontEnd - DAE generated: time 5.21e-06/0.01633, allocations: 3.938 kB / 0.7713 GB, free: 10.6 MB / 0.6512 GB Notification: Performance of FrontEnd: time 2.194e-06/0.01633, allocations: 0 / 0.7713 GB, free: 10.6 MB / 0.6512 GB Notification: Performance of Transformations before backend: time 2.493e-05/0.01635, allocations: 0 / 0.7713 GB, free: 10.6 MB / 0.6512 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.00269/0.01904, allocations: 2.217 MB / 0.7735 GB, free: 8.219 MB / 0.6512 GB Notification: Performance of prepare preOptimizeDAE: time 4.968e-05/0.01909, allocations: 8.031 kB / 0.7735 GB, free: 8.211 MB / 0.6512 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0001485/0.01924, allocations: 151.4 kB / 0.7736 GB, free: 8.059 MB / 0.6512 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005835/0.01983, allocations: 243.8 kB / 0.7739 GB, free: 7.82 MB / 0.6512 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.000807/0.02063, allocations: 0.7048 MB / 0.7745 GB, free: 7.074 MB / 0.6512 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.548e-05/0.02068, allocations: 70.38 kB / 0.7746 GB, free: 7.004 MB / 0.6512 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001286/0.02081, allocations: 112.3 kB / 0.7747 GB, free: 6.895 MB / 0.6512 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001856/0.02266, allocations: 1.991 MB / 0.7767 GB, free: 4.785 MB / 0.6512 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.337e-05/0.02271, allocations: 15.89 kB / 0.7767 GB, free: 4.77 MB / 0.6512 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.428e-05/0.02277, allocations: 43.94 kB / 0.7767 GB, free: 4.727 MB / 0.6512 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.458e-05/0.02279, allocations: 20 kB / 0.7767 GB, free: 4.707 MB / 0.6512 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001698/0.02449, allocations: 1.811 MB / 0.7785 GB, free: 2.797 MB / 0.6512 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003355/0.02785, allocations: 2.561 MB / 0.781 GB, free: 176 kB / 0.6512 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002148/0.03, allocations: 1.932 MB / 0.7829 GB, free: 14.1 MB / 0.6668 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001125/0.03112, allocations: 1.426 MB / 0.7843 GB, free: 12.56 MB / 0.6668 GB Notification: Performance of preOpt evalFunc (simulation): time 5.305e-05/0.03117, allocations: 16 kB / 0.7843 GB, free: 12.55 MB / 0.6668 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001943/0.03312, allocations: 2.284 MB / 0.7865 GB, free: 10.04 MB / 0.6668 GB Notification: Performance of pre-optimization done (n=157): time 2.845e-06/0.03312, allocations: 0 / 0.7865 GB, free: 10.04 MB / 0.6668 GB Notification: Performance of matching and sorting (n=165): time 0.007787/0.04091, allocations: 9.286 MB / 0.7956 GB, free: 144 kB / 0.6668 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003124/0.04122, allocations: 1.036 MB / 0.7966 GB, free: 14.87 MB / 0.6824 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009208/0.04214, allocations: 0.9949 MB / 0.7976 GB, free: 13.86 MB / 0.6824 GB Notification: Performance of collectPreVariables (initialization): time 8.372e-05/0.04222, allocations: 77.69 kB / 0.7977 GB, free: 13.77 MB / 0.6824 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002859/0.04251, allocations: 482.7 kB / 0.7981 GB, free: 13.3 MB / 0.6824 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002838/0.04279, allocations: 0.5347 MB / 0.7986 GB, free: 12.76 MB / 0.6824 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002771/0.04307, allocations: 283.6 kB / 0.7989 GB, free: 12.47 MB / 0.6824 GB Notification: Performance of setup shared object (initialization): time 6.802e-05/0.04314, allocations: 301.1 kB / 0.7992 GB, free: 12.18 MB / 0.6824 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001335/0.04447, allocations: 1.622 MB / 0.8008 GB, free: 10.43 MB / 0.6824 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001351/0.04582, allocations: 2.02 MB / 0.8028 GB, free: 8.117 MB / 0.6824 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.005/0.05082, allocations: 6.586 MB / 0.8092 GB, free: 0.9375 MB / 0.6824 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.328e-05/0.05084, allocations: 7.938 kB / 0.8092 GB, free: 0.9297 MB / 0.6824 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.003364/0.0542, allocations: 3.913 MB / 0.813 GB, free: 12.76 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001984/0.0544, allocations: 0.5724 MB / 0.8136 GB, free: 12.07 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.417e-05/0.05441, allocations: 8 kB / 0.8136 GB, free: 12.06 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.798e-05/0.05444, allocations: 19.47 kB / 0.8136 GB, free: 12.04 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006385/0.05508, allocations: 323.4 kB / 0.8139 GB, free: 11.73 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.804e-05/0.0551, allocations: 19.94 kB / 0.8139 GB, free: 11.71 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005969/0.05569, allocations: 95.94 kB / 0.814 GB, free: 11.61 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002092/0.0559, allocations: 245.7 kB / 0.8142 GB, free: 11.38 MB / 0.698 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001271/0.05717, allocations: 1.095 MB / 0.8153 GB, free: 10.18 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003085/0.05748, allocations: 163.1 kB / 0.8155 GB, free: 10.02 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002142/0.0577, allocations: 145.8 kB / 0.8156 GB, free: 9.883 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.292e-05/0.05771, allocations: 12 kB / 0.8156 GB, free: 9.871 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.892e-05/0.05773, allocations: 0 / 0.8156 GB, free: 9.871 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.655e-05/0.05775, allocations: 11.97 kB / 0.8156 GB, free: 9.859 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004993/0.06274, allocations: 5.153 MB / 0.8207 GB, free: 4.457 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.775e-06/0.06275, allocations: 0 / 0.8207 GB, free: 4.457 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006929/0.06344, allocations: 255.6 kB / 0.8209 GB, free: 4.207 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.142e-05/0.06345, allocations: 8 kB / 0.8209 GB, free: 4.199 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001067/0.06356, allocations: 63.95 kB / 0.821 GB, free: 4.137 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.946e-06/0.06357, allocations: 7.938 kB / 0.821 GB, free: 4.129 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.937e-06/0.06357, allocations: 11.92 kB / 0.821 GB, free: 4.117 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.005237/0.06881, allocations: 5.848 MB / 0.8267 GB, free: 13.95 MB / 0.7137 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006104/0.06942, allocations: 326.9 kB / 0.827 GB, free: 13.62 MB / 0.7137 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002292/0.06965, allocations: 67.98 kB / 0.8271 GB, free: 13.56 MB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000512/0.07016, allocations: 79.69 kB / 0.8272 GB, free: 13.48 MB / 0.7137 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003308/0.07049, allocations: 159.8 kB / 0.8273 GB, free: 13.33 MB / 0.7137 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002726/0.07076, allocations: 235.5 kB / 0.8275 GB, free: 13.11 MB / 0.7137 GB Notification: Performance of sorting global known variables: time 0.001008/0.07177, allocations: 0.697 MB / 0.8282 GB, free: 12.4 MB / 0.7137 GB Notification: Performance of sort global known variables: time 1.7e-07/0.07177, allocations: 3.938 kB / 0.8282 GB, free: 12.39 MB / 0.7137 GB Notification: Performance of remove unused functions: time 0.001165/0.07294, allocations: 379.9 kB / 0.8286 GB, free: 12.02 MB / 0.7137 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.005622/0.07856, allocations: 6.583 MB / 0.835 GB, free: 5.121 MB / 0.7137 GB Notification: Performance of simCode: created initialization part: time 0.003651/0.08221, allocations: 4.496 MB / 0.8394 GB, free: 168 kB / 0.7137 GB Notification: Performance of simCode: created event and clocks part: time 3.436e-06/0.08221, allocations: 0 / 0.8394 GB, free: 168 kB / 0.7137 GB Notification: Performance of simCode: created simulation system equations: time 0.001703/0.08391, allocations: 2.588 MB / 0.8419 GB, free: 13.28 MB / 0.7293 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001458/0.08537, allocations: 349 kB / 0.8423 GB, free: 12.95 MB / 0.7293 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01941/0.1048, allocations: 19.82 MB / 0.8616 GB, free: 8.109 MB / 0.7449 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000563/0.1053, allocations: 0.6565 MB / 0.8623 GB, free: 7.418 MB / 0.7449 GB Notification: Performance of simCode: alias equations: time 0.0004884/0.1058, allocations: 115.4 kB / 0.8624 GB, free: 7.309 MB / 0.7449 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007371/0.1066, allocations: 0.512 MB / 0.8629 GB, free: 6.797 MB / 0.7449 GB Notification: Performance of SimCode: time 1.993e-06/0.1066, allocations: 3.938 kB / 0.8629 GB, free: 6.793 MB / 0.7449 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.3731/0.4797, allocations: 37.98 MB / 0.9 GB, free: 162.4 MB / 0.7605 GB Notification: Performance of buildModelFMU: Generate platform static: time 8.352/8.831, allocations: 0.9375 kB / 0.9 GB, free: 162.4 MB / 0.7605 GB " [Timeout remaining time 651] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment_fmu --startTime=0 --stopTime=864000 --stepSize=10 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 10 ../Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe 2>&1) [Timeout 52.5] [Calling sys.exit(0), Time elapsed: 15.9931500274688]