Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001194/0.001194, allocations: 80.44 kB / 19.17 MB, free: 0.7383 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001394/0.001394, allocations: 165.9 kB / 22.45 MB, free: 2.102 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8952/0.8952, allocations: 177.1 MB / 202.8 MB, free: 5.746 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.345/1.345, allocations: 273.5 MB / 0.5202 GB, free: 14.99 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.745e-06/2.745e-06, allocations: 0 / 0.7553 GB, free: 10.94 MB / 0.6355 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.961e-05/2.235e-05, allocations: 4.531 kB / 0.7553 GB, free: 10.93 MB / 0.6355 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005104/0.005126, allocations: 6.22 MB / 0.7614 GB, free: 4.754 MB / 0.6355 GB Notification: Performance of NFInst.instExpressions: time 0.001975/0.007101, allocations: 1.278 MB / 0.7626 GB, free: 3.477 MB / 0.6355 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002755/0.007377, allocations: 8 kB / 0.7626 GB, free: 3.469 MB / 0.6355 GB Notification: Performance of NFTyping.typeComponents: time 0.0002239/0.0076, allocations: 114.8 kB / 0.7627 GB, free: 3.355 MB / 0.6355 GB Notification: Performance of NFTyping.typeBindings: time 0.0004728/0.008073, allocations: 337.1 kB / 0.7631 GB, free: 3.023 MB / 0.6355 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004814/0.008555, allocations: 287.5 kB / 0.7633 GB, free: 2.742 MB / 0.6355 GB Notification: Performance of NFFlatten.flatten: time 0.0008693/0.009424, allocations: 1.217 MB / 0.7645 GB, free: 1.52 MB / 0.6355 GB Notification: Performance of NFFlatten.resolveConnections: time 0.000281/0.009705, allocations: 171.9 kB / 0.7647 GB, free: 1.336 MB / 0.6355 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005197/0.01022, allocations: 0.6238 MB / 0.7653 GB, free: 0.7109 MB / 0.6355 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000412/0.01064, allocations: 346.9 kB / 0.7656 GB, free: 380 kB / 0.6355 GB Notification: Performance of NFPackage.collectConstants: time 0.0001/0.01074, allocations: 112 kB / 0.7657 GB, free: 268 kB / 0.6355 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000106/0.01084, allocations: 112 kB / 0.7659 GB, free: 156 kB / 0.6355 GB Notification: Performance of NFScalarize.scalarize: time 0.0001166/0.01096, allocations: 199.2 kB / 0.766 GB, free: 15.96 MB / 0.6512 GB Notification: Performance of NFVerifyModel.verify: time 0.000265/0.01122, allocations: 367.2 kB / 0.7664 GB, free: 15.6 MB / 0.6512 GB Notification: Performance of NFConvertDAE.convert: time 0.0007913/0.01202, allocations: 1.177 MB / 0.7675 GB, free: 14.42 MB / 0.6512 GB Notification: Performance of FrontEnd - DAE generated: time 4.619e-06/0.01202, allocations: 0 / 0.7675 GB, free: 14.42 MB / 0.6512 GB Notification: Performance of FrontEnd: time 1.804e-06/0.01202, allocations: 0 / 0.7675 GB, free: 14.42 MB / 0.6512 GB Notification: Performance of Transformations before backend: time 1.23e-05/0.01203, allocations: 0 / 0.7675 GB, free: 14.42 MB / 0.6512 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001504/0.01354, allocations: 1.329 MB / 0.7688 GB, free: 13 MB / 0.6512 GB Notification: Performance of prepare preOptimizeDAE: time 4.088e-05/0.01358, allocations: 8.031 kB / 0.7688 GB, free: 12.99 MB / 0.6512 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 9.193e-05/0.01367, allocations: 102.5 kB / 0.7689 GB, free: 12.88 MB / 0.6512 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000113/0.01378, allocations: 95.44 kB / 0.769 GB, free: 12.79 MB / 0.6512 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004827/0.01427, allocations: 452.8 kB / 0.7695 GB, free: 12.31 MB / 0.6512 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.215e-05/0.0143, allocations: 49.31 kB / 0.7695 GB, free: 12.27 MB / 0.6512 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.546e-05/0.01438, allocations: 71.89 kB / 0.7696 GB, free: 12.2 MB / 0.6512 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.000923/0.01531, allocations: 0.8514 MB / 0.7704 GB, free: 11.28 MB / 0.6512 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.598e-05/0.01533, allocations: 7.953 kB / 0.7704 GB, free: 11.27 MB / 0.6512 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.167e-05/0.01538, allocations: 27.94 kB / 0.7704 GB, free: 11.25 MB / 0.6512 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.13e-05/0.01539, allocations: 16 kB / 0.7705 GB, free: 11.23 MB / 0.6512 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008733/0.01626, allocations: 0.7386 MB / 0.7712 GB, free: 10.46 MB / 0.6512 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001825/0.01809, allocations: 1.838 MB / 0.773 GB, free: 8.551 MB / 0.6512 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001067/0.01915, allocations: 0.8116 MB / 0.7738 GB, free: 7.684 MB / 0.6512 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004886/0.01964, allocations: 481.3 kB / 0.7742 GB, free: 7.168 MB / 0.6512 GB Notification: Performance of preOpt evalFunc (simulation): time 4.027e-05/0.01968, allocations: 11.94 kB / 0.7742 GB, free: 7.156 MB / 0.6512 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0009461/0.02063, allocations: 1.103 MB / 0.7753 GB, free: 5.926 MB / 0.6512 GB Notification: Performance of pre-optimization done (n=99): time 2.054e-06/0.02063, allocations: 0 / 0.7753 GB, free: 5.926 MB / 0.6512 GB Notification: Performance of matching and sorting (n=105): time 0.003799/0.02443, allocations: 3.547 MB / 0.7788 GB, free: 2.109 MB / 0.6512 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001991/0.02463, allocations: 0.599 MB / 0.7794 GB, free: 1.375 MB / 0.6512 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004894/0.02512, allocations: 0.5341 MB / 0.7799 GB, free: 0.832 MB / 0.6512 GB Notification: Performance of collectPreVariables (initialization): time 5.96e-05/0.02518, allocations: 65.62 kB / 0.78 GB, free: 0.7617 MB / 0.6512 GB Notification: Performance of collectInitialEqns (initialization): time 0.000167/0.02534, allocations: 301.4 kB / 0.7802 GB, free: 472 kB / 0.6512 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001938/0.02554, allocations: 349.1 kB / 0.7806 GB, free: 120 kB / 0.6512 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000191/0.02573, allocations: 186.6 kB / 0.7808 GB, free: 15.93 MB / 0.6668 GB Notification: Performance of setup shared object (initialization): time 0.0001365/0.02586, allocations: 406.7 kB / 0.7811 GB, free: 15.52 MB / 0.6668 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006114/0.02648, allocations: 0.633 MB / 0.7818 GB, free: 14.82 MB / 0.6668 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007185/0.02719, allocations: 0.9606 MB / 0.7827 GB, free: 13.68 MB / 0.6668 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002365/0.02956, allocations: 2.498 MB / 0.7851 GB, free: 10.86 MB / 0.6668 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.465e-06/0.02957, allocations: 0 / 0.7851 GB, free: 10.86 MB / 0.6668 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.001681/0.03125, allocations: 1.736 MB / 0.7868 GB, free: 9.004 MB / 0.6668 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001055/0.03135, allocations: 267.3 kB / 0.7871 GB, free: 8.688 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.318e-05/0.03137, allocations: 8.625 kB / 0.7871 GB, free: 8.68 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.171e-05/0.03139, allocations: 12 kB / 0.7871 GB, free: 8.668 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000462/0.03185, allocations: 239.6 kB / 0.7873 GB, free: 8.434 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.678e-05/0.03187, allocations: 23.91 kB / 0.7874 GB, free: 8.41 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003976/0.03227, allocations: 67.95 kB / 0.7874 GB, free: 8.344 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.42e-05/0.03232, allocations: 48 kB / 0.7875 GB, free: 8.297 MB / 0.6668 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005299/0.03285, allocations: 0.5842 MB / 0.788 GB, free: 7.676 MB / 0.6668 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.114e-05/0.03294, allocations: 87.48 kB / 0.7881 GB, free: 7.59 MB / 0.6668 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.1e-05/0.03303, allocations: 85.38 kB / 0.7882 GB, free: 7.508 MB / 0.6668 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.571e-06/0.03304, allocations: 8 kB / 0.7882 GB, free: 7.5 MB / 0.6668 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 9.568e-06/0.03305, allocations: 0 / 0.7882 GB, free: 7.5 MB / 0.6668 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.606e-06/0.03306, allocations: 3.984 kB / 0.7882 GB, free: 7.496 MB / 0.6668 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002374/0.03543, allocations: 2.397 MB / 0.7906 GB, free: 4.977 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.788e-06/0.03543, allocations: 0 / 0.7906 GB, free: 4.977 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004615/0.0359, allocations: 171.8 kB / 0.7907 GB, free: 4.809 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.064e-06/0.0359, allocations: 7.75 kB / 0.7907 GB, free: 4.805 MB / 0.6668 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.284e-05/0.03596, allocations: 43.91 kB / 0.7908 GB, free: 4.762 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.22e-06/0.03596, allocations: 4 kB / 0.7908 GB, free: 4.758 MB / 0.6668 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.643e-06/0.03596, allocations: 0 / 0.7908 GB, free: 4.758 MB / 0.6668 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002003/0.03797, allocations: 2.248 MB / 0.793 GB, free: 2.387 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002998/0.03827, allocations: 175.4 kB / 0.7931 GB, free: 2.215 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000113/0.03838, allocations: 44 kB / 0.7932 GB, free: 2.172 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000303/0.03868, allocations: 51.95 kB / 0.7932 GB, free: 2.121 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001576/0.03884, allocations: 111.8 kB / 0.7933 GB, free: 2.012 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.086e-05/0.03888, allocations: 35.98 kB / 0.7934 GB, free: 1.977 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.0003296/0.03921, allocations: 374.8 kB / 0.7937 GB, free: 1.613 MB / 0.6668 GB Notification: Performance of sort global known variables: time 9e-08/0.03921, allocations: 0 / 0.7937 GB, free: 1.613 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.000627/0.03984, allocations: 244 kB / 0.794 GB, free: 1.375 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.002302/0.04214, allocations: 2.887 MB / 0.7968 GB, free: 14.35 MB / 0.6824 GB Notification: Performance of simCode: created initialization part: time 0.001653/0.04379, allocations: 1.824 MB / 0.7986 GB, free: 12.32 MB / 0.6824 GB Notification: Performance of simCode: created event and clocks part: time 3.226e-06/0.04379, allocations: 192 / 0.7986 GB, free: 12.32 MB / 0.6824 GB Notification: Performance of simCode: created simulation system equations: time 0.0007665/0.04456, allocations: 0.9737 MB / 0.7995 GB, free: 11.24 MB / 0.6824 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009901/0.04555, allocations: 254.2 kB / 0.7998 GB, free: 11 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009758/0.05531, allocations: 9.886 MB / 0.8094 GB, free: 0.4961 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002563/0.05557, allocations: 369.9 kB / 0.8098 GB, free: 112 kB / 0.6824 GB Notification: Performance of simCode: alias equations: time 0.0003193/0.05588, allocations: 89.83 kB / 0.8098 GB, free: 24 kB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002902/0.05618, allocations: 300.5 kB / 0.8101 GB, free: 15.72 MB / 0.698 GB Notification: Performance of SimCode: time 1.343e-06/0.05618, allocations: 0 / 0.8101 GB, free: 15.72 MB / 0.698 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.09839/0.1546, allocations: 23.32 MB / 0.8329 GB, free: 9.43 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate platform static: time 8.027/8.181, allocations: 2.922 kB / 0.8329 GB, free: 9.43 MB / 0.7137 GB " [Timeout remaining time 652] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI_fmu --startTime=0 --stopTime=864000 --stepSize=10 --timeout=50 --tolerance=1e-09 ../Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-09 --interface-type ModelExchange --solver CVode --output-interval 10 ../Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe 2>&1) [Timeout 52.5] fmpy timed out simulating the FMU [Calling sys.exit(0), Time elapsed: 13.07302601262927]