Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007569/0.0007569, allocations: 80.44 kB / 19.17 MB, free: 0.7461 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000849/0.000849, allocations: 165.9 kB / 22.45 MB, free: 2.109 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8875/0.8875, allocations: 177.1 MB / 202.8 MB, free: 5.746 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.371/1.371, allocations: 273.5 MB / 0.5202 GB, free: 15.05 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.835e-06/2.835e-06, allocations: 0 / 0.7555 GB, free: 10.8 MB / 0.6355 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.1e-05/2.383e-05, allocations: 2.281 kB / 0.7555 GB, free: 10.8 MB / 0.6355 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00665/0.006674, allocations: 5.113 MB / 0.7605 GB, free: 5.734 MB / 0.6355 GB Notification: Performance of NFInst.instExpressions: time 0.002819/0.009493, allocations: 1.293 MB / 0.7618 GB, free: 4.445 MB / 0.6355 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.000519/0.01001, allocations: 11.94 kB / 0.7618 GB, free: 4.434 MB / 0.6355 GB Notification: Performance of NFTyping.typeComponents: time 0.00028/0.01029, allocations: 126.7 kB / 0.7619 GB, free: 4.309 MB / 0.6355 GB Notification: Performance of NFTyping.typeBindings: time 0.0006577/0.01095, allocations: 368.8 kB / 0.7623 GB, free: 3.945 MB / 0.6355 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004481/0.0114, allocations: 259.6 kB / 0.7625 GB, free: 3.691 MB / 0.6355 GB Notification: Performance of NFFlatten.flatten: time 0.0009055/0.0123, allocations: 1.287 MB / 0.7638 GB, free: 2.398 MB / 0.6355 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002909/0.01259, allocations: 207.4 kB / 0.764 GB, free: 2.184 MB / 0.6355 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005753/0.01317, allocations: 0.6472 MB / 0.7646 GB, free: 1.535 MB / 0.6355 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004346/0.0136, allocations: 370.9 kB / 0.7649 GB, free: 1.172 MB / 0.6355 GB Notification: Performance of NFPackage.collectConstants: time 0.0001046/0.01371, allocations: 108 kB / 0.765 GB, free: 1.066 MB / 0.6355 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001203/0.01383, allocations: 112 kB / 0.7651 GB, free: 0.957 MB / 0.6355 GB Notification: Performance of NFScalarize.scalarize: time 0.0001157/0.01394, allocations: 203.2 kB / 0.7653 GB, free: 0.7578 MB / 0.6355 GB Notification: Performance of NFVerifyModel.verify: time 0.0002878/0.01423, allocations: 387.2 kB / 0.7657 GB, free: 388 kB / 0.6355 GB Notification: Performance of NFConvertDAE.convert: time 0.0007939/0.01503, allocations: 1.173 MB / 0.7669 GB, free: 15.2 MB / 0.6512 GB Notification: Performance of FrontEnd - DAE generated: time 3.707e-06/0.01503, allocations: 3.938 kB / 0.7669 GB, free: 15.2 MB / 0.6512 GB Notification: Performance of FrontEnd: time 1.503e-06/0.01503, allocations: 0 / 0.7669 GB, free: 15.2 MB / 0.6512 GB Notification: Performance of Transformations before backend: time 1.775e-05/0.01505, allocations: 0 / 0.7669 GB, free: 15.2 MB / 0.6512 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001709/0.01676, allocations: 1.386 MB / 0.7682 GB, free: 13.72 MB / 0.6512 GB Notification: Performance of prepare preOptimizeDAE: time 4.538e-05/0.0168, allocations: 8.031 kB / 0.7682 GB, free: 13.71 MB / 0.6512 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0001032/0.01691, allocations: 110.7 kB / 0.7683 GB, free: 13.6 MB / 0.6512 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001281/0.01703, allocations: 100.3 kB / 0.7684 GB, free: 13.5 MB / 0.6512 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005251/0.01756, allocations: 445.3 kB / 0.7688 GB, free: 13.04 MB / 0.6512 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.636e-05/0.0176, allocations: 53.69 kB / 0.7689 GB, free: 12.98 MB / 0.6512 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.786e-05/0.01768, allocations: 80.31 kB / 0.769 GB, free: 12.9 MB / 0.6512 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001003/0.01869, allocations: 0.8934 MB / 0.7698 GB, free: 11.95 MB / 0.6512 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.892e-05/0.01872, allocations: 7.953 kB / 0.7699 GB, free: 11.95 MB / 0.6512 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.227e-05/0.01876, allocations: 28 kB / 0.7699 GB, free: 11.92 MB / 0.6512 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.267e-05/0.01877, allocations: 19.94 kB / 0.7699 GB, free: 11.9 MB / 0.6512 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0009229/0.01969, allocations: 0.7724 MB / 0.7707 GB, free: 11.09 MB / 0.6512 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002453/0.02215, allocations: 2.016 MB / 0.7726 GB, free: 9.016 MB / 0.6512 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0008907/0.02304, allocations: 0.7274 MB / 0.7733 GB, free: 8.242 MB / 0.6512 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0005557/0.02359, allocations: 481.6 kB / 0.7738 GB, free: 7.734 MB / 0.6512 GB Notification: Performance of preOpt evalFunc (simulation): time 2.731e-05/0.02362, allocations: 12.59 kB / 0.7738 GB, free: 7.723 MB / 0.6512 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00121/0.02483, allocations: 1.032 MB / 0.7748 GB, free: 6.566 MB / 0.6512 GB Notification: Performance of pre-optimization done (n=99): time 4.238e-06/0.02484, allocations: 4 kB / 0.7748 GB, free: 6.562 MB / 0.6512 GB Notification: Performance of matching and sorting (n=105): time 0.004168/0.029, allocations: 3.219 MB / 0.778 GB, free: 3.145 MB / 0.6512 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002517/0.02926, allocations: 0.5498 MB / 0.7785 GB, free: 2.469 MB / 0.6512 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005639/0.02982, allocations: 0.5184 MB / 0.779 GB, free: 1.941 MB / 0.6512 GB Notification: Performance of collectPreVariables (initialization): time 6.364e-05/0.02988, allocations: 57.7 kB / 0.7791 GB, free: 1.879 MB / 0.6512 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004646/0.03035, allocations: 325.4 kB / 0.7794 GB, free: 1.555 MB / 0.6512 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001975/0.03055, allocations: 349.2 kB / 0.7797 GB, free: 1.211 MB / 0.6512 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001787/0.03072, allocations: 182.6 kB / 0.7799 GB, free: 1.027 MB / 0.6512 GB Notification: Performance of setup shared object (initialization): time 0.000141/0.03086, allocations: 394.7 kB / 0.7803 GB, free: 0.6328 MB / 0.6512 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006028/0.03147, allocations: 0.637 MB / 0.7809 GB, free: 15.93 MB / 0.6668 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006931/0.03216, allocations: 0.93 MB / 0.7818 GB, free: 14.83 MB / 0.6668 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002402/0.03456, allocations: 2.465 MB / 0.7842 GB, free: 12.07 MB / 0.6668 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.046e-05/0.03457, allocations: 7.938 kB / 0.7842 GB, free: 12.06 MB / 0.6668 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.001743/0.03632, allocations: 1.71 MB / 0.7859 GB, free: 10.23 MB / 0.6668 GB Notification: Performance of prepare postOptimizeDAE: time 0.000379/0.03669, allocations: 265.6 kB / 0.7861 GB, free: 9.914 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.212e-05/0.03671, allocations: 7.984 kB / 0.7861 GB, free: 9.906 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.31e-05/0.03673, allocations: 16 kB / 0.7861 GB, free: 9.891 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004993/0.03723, allocations: 240 kB / 0.7864 GB, free: 9.656 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.562e-05/0.03724, allocations: 19.94 kB / 0.7864 GB, free: 9.637 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004161/0.03766, allocations: 63.95 kB / 0.7865 GB, free: 9.574 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.881e-05/0.03771, allocations: 48 kB / 0.7865 GB, free: 9.527 MB / 0.6668 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005502/0.03826, allocations: 0.5507 MB / 0.787 GB, free: 8.938 MB / 0.6668 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.151e-05/0.03835, allocations: 87.48 kB / 0.7871 GB, free: 8.852 MB / 0.6668 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.159e-05/0.03844, allocations: 87.72 kB / 0.7872 GB, free: 8.758 MB / 0.6668 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.681e-06/0.03845, allocations: 11.94 kB / 0.7872 GB, free: 8.746 MB / 0.6668 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 9.839e-06/0.03846, allocations: 3.938 kB / 0.7872 GB, free: 8.742 MB / 0.6668 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.05e-05/0.03847, allocations: 11.97 kB / 0.7872 GB, free: 8.73 MB / 0.6668 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0023/0.04077, allocations: 2.227 MB / 0.7894 GB, free: 6.387 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.667e-06/0.04077, allocations: 0 / 0.7894 GB, free: 6.387 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004711/0.04124, allocations: 167.8 kB / 0.7896 GB, free: 6.223 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.354e-06/0.04125, allocations: 4 kB / 0.7896 GB, free: 6.219 MB / 0.6668 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.179e-05/0.0413, allocations: 35.98 kB / 0.7896 GB, free: 6.184 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.869e-06/0.04131, allocations: 4 kB / 0.7896 GB, free: 6.18 MB / 0.6668 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.014e-06/0.04131, allocations: 0 / 0.7896 GB, free: 6.18 MB / 0.6668 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00203/0.04334, allocations: 2.076 MB / 0.7916 GB, free: 3.977 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001375/0.04348, allocations: 75.47 kB / 0.7917 GB, free: 3.902 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001123/0.04359, allocations: 47.98 kB / 0.7918 GB, free: 3.855 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000272/0.04386, allocations: 47.95 kB / 0.7918 GB, free: 3.809 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001679/0.04403, allocations: 100.8 kB / 0.7919 GB, free: 3.711 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.187e-05/0.04407, allocations: 39.97 kB / 0.7919 GB, free: 3.672 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.0003468/0.04442, allocations: 358.9 kB / 0.7923 GB, free: 3.324 MB / 0.6668 GB Notification: Performance of sort global known variables: time 3.01e-07/0.04442, allocations: 0 / 0.7923 GB, free: 3.324 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.0006937/0.04511, allocations: 264.1 kB / 0.7925 GB, free: 3.066 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.00252/0.04763, allocations: 2.709 MB / 0.7952 GB, free: 228 kB / 0.6668 GB Notification: Performance of simCode: created initialization part: time 0.00168/0.04931, allocations: 1.81 MB / 0.7969 GB, free: 14.21 MB / 0.6824 GB Notification: Performance of simCode: created event and clocks part: time 2.815e-06/0.04931, allocations: 0 / 0.7969 GB, free: 14.21 MB / 0.6824 GB Notification: Performance of simCode: created simulation system equations: time 0.0007045/0.05002, allocations: 0.946 MB / 0.7979 GB, free: 13.16 MB / 0.6824 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008439/0.05086, allocations: 256.2 kB / 0.7981 GB, free: 12.91 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01115/0.06201, allocations: 9.569 MB / 0.8075 GB, free: 2.762 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002862/0.0623, allocations: 370.8 kB / 0.8078 GB, free: 2.371 MB / 0.6824 GB Notification: Performance of simCode: alias equations: time 0.0004167/0.06271, allocations: 97.38 kB / 0.8079 GB, free: 2.281 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003404/0.06305, allocations: 316.3 kB / 0.8082 GB, free: 1.973 MB / 0.6824 GB Notification: Performance of SimCode: time 2.324e-06/0.06306, allocations: 0 / 0.8082 GB, free: 1.973 MB / 0.6824 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.1061/0.1692, allocations: 22.54 MB / 0.8302 GB, free: 12.48 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate platform static: time 7.669/7.838, allocations: 3.453 kB / 0.8302 GB, free: 12.48 MB / 0.7137 GB " [Timeout remaining time 652] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites_fmu --startTime=0 --stopTime=864000 --stepSize=1 --timeout=50 --tolerance=1e-09 ../Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites.fmu) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-09 --interface-type ModelExchange --solver CVode --output-interval 1 ../Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites.fmu) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe 2>&1) [Timeout 52.5] fmpy timed out simulating the FMU [Calling sys.exit(0), Time elapsed: 18.024239127524197]