Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001375/0.001375, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001153/0.001153, allocations: 165.9 kB / 22.46 MB, free: 2.105 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.936/0.936, allocations: 177.1 MB / 202.8 MB, free: 5.758 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.4/1.4, allocations: 273.5 MB / 0.5202 GB, free: 15.01 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK",fmuType="me",version="2.0",platforms={"static"})
"" <> buildModelFMU(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 3.306e-06/3.306e-06, allocations: 0 / 0.7553 GB, free: 10.97 MB / 0.6355 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.998e-05/2.328e-05, allocations: 3.594 kB / 0.7553 GB, free: 10.97 MB / 0.6355 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.002696/0.00272, allocations: 1.261 MB / 0.7566 GB, free: 9.711 MB / 0.6355 GB
Notification: Performance of NFInst.instExpressions: time 0.0002493/0.002969, allocations: 47.8 kB / 0.7566 GB, free: 9.664 MB / 0.6355 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.393e-05/0.003013, allocations: 1.312 kB / 0.7566 GB, free: 9.664 MB / 0.6355 GB
Notification: Performance of NFTyping.typeComponents: time 8.002e-05/0.003093, allocations: 3.938 kB / 0.7566 GB, free: 9.66 MB / 0.6355 GB
Notification: Performance of NFTyping.typeBindings: time 4.457e-05/0.003137, allocations: 9.188 kB / 0.7566 GB, free: 9.652 MB / 0.6355 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001951/0.003333, allocations: 21.16 kB / 0.7566 GB, free: 9.633 MB / 0.6355 GB
Notification: Performance of NFFlatten.flatten: time 0.0002011/0.003534, allocations: 145.1 kB / 0.7568 GB, free: 9.496 MB / 0.6355 GB
Notification: Performance of NFFlatten.resolveConnections: time 5.835e-05/0.003592, allocations: 4 kB / 0.7568 GB, free: 9.492 MB / 0.6355 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001677/0.00376, allocations: 77.23 kB / 0.7568 GB, free: 9.418 MB / 0.6355 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002031/0.003963, allocations: 81.39 kB / 0.7569 GB, free: 9.34 MB / 0.6355 GB
Notification: Performance of NFPackage.collectConstants: time 4.471e-05/0.004007, allocations: 8 kB / 0.7569 GB, free: 9.332 MB / 0.6355 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.306e-05/0.00403, allocations: 8 kB / 0.7569 GB, free: 9.324 MB / 0.6355 GB
Notification: Performance of NFScalarize.scalarize: time 6.561e-05/0.004096, allocations: 30.56 kB / 0.757 GB, free: 9.297 MB / 0.6355 GB
Notification: Performance of NFVerifyModel.verify: time 6.078e-05/0.004157, allocations: 34.58 kB / 0.757 GB, free: 9.266 MB / 0.6355 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001711/0.004328, allocations: 89.44 kB / 0.7571 GB, free: 9.18 MB / 0.6355 GB
Notification: Performance of FrontEnd - DAE generated: time 3.477e-06/0.004331, allocations: 0 / 0.7571 GB, free: 9.18 MB / 0.6355 GB
Notification: Performance of FrontEnd: time 1.052e-06/0.004333, allocations: 0 / 0.7571 GB, free: 9.18 MB / 0.6355 GB
Notification: Performance of Transformations before backend: time 6.332e-06/0.004339, allocations: 4 kB / 0.7571 GB, free: 9.176 MB / 0.6355 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.001445/0.005784, allocations: 0.4914 MB / 0.7576 GB, free: 8.652 MB / 0.6355 GB
Notification: Performance of prepare preOptimizeDAE: time 4.923e-05/0.005833, allocations: 8.031 kB / 0.7576 GB, free: 8.645 MB / 0.6355 GB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 9.059e-05/0.005924, allocations: 38.73 kB / 0.7576 GB, free: 8.598 MB / 0.6355 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.209e-05/0.005966, allocations: 8.891 kB / 0.7576 GB, free: 8.59 MB / 0.6355 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001943/0.00616, allocations: 121.7 kB / 0.7577 GB, free: 8.445 MB / 0.6355 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.592e-05/0.006176, allocations: 8.375 kB / 0.7577 GB, free: 8.438 MB / 0.6355 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.444e-05/0.0062, allocations: 4.375 kB / 0.7578 GB, free: 8.434 MB / 0.6355 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004584/0.006659, allocations: 149.1 kB / 0.7579 GB, free: 8.277 MB / 0.6355 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.048e-05/0.006669, allocations: 192 / 0.7579 GB, free: 8.277 MB / 0.6355 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.364e-05/0.006693, allocations: 4.375 kB / 0.7579 GB, free: 8.273 MB / 0.6355 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.434e-06/0.0067, allocations: 5.328 kB / 0.7579 GB, free: 8.27 MB / 0.6355 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004943/0.007195, allocations: 147.8 kB / 0.758 GB, free: 8.125 MB / 0.6355 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.000337/0.007532, allocations: 246.1 kB / 0.7583 GB, free: 7.84 MB / 0.6355 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003091/0.007841, allocations: 98.5 kB / 0.7584 GB, free: 7.734 MB / 0.6355 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003528/0.008194, allocations: 108.7 kB / 0.7585 GB, free: 7.625 MB / 0.6355 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.663e-05/0.00821, allocations: 0 / 0.7585 GB, free: 7.625 MB / 0.6355 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.198e-05/0.008232, allocations: 39.81 kB / 0.7585 GB, free: 7.578 MB / 0.6355 GB
Notification: Performance of pre-optimization done (n=11): time 1.152e-06/0.008233, allocations: 0 / 0.7585 GB, free: 7.578 MB / 0.6355 GB
Notification: Performance of matching and sorting (n=11): time 0.0008934/0.009127, allocations: 292.2 kB / 0.7588 GB, free: 7.289 MB / 0.6355 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.722e-05/0.009164, allocations: 55.41 kB / 0.7588 GB, free: 7.223 MB / 0.6355 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000106/0.00927, allocations: 109.8 kB / 0.759 GB, free: 7.105 MB / 0.6355 GB
Notification: Performance of collectPreVariables (initialization): time 2.301e-05/0.009293, allocations: 25.7 kB / 0.759 GB, free: 7.074 MB / 0.6355 GB
Notification: Performance of collectInitialEqns (initialization): time 7.057e-05/0.009364, allocations: 92.09 kB / 0.7591 GB, free: 6.98 MB / 0.6355 GB
Notification: Performance of collectInitialBindings (initialization): time 3.637e-05/0.0094, allocations: 35.69 kB / 0.7591 GB, free: 6.945 MB / 0.6355 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.7e-05/0.009477, allocations: 29.7 kB / 0.7591 GB, free: 6.91 MB / 0.6355 GB
Notification: Performance of setup shared object (initialization): time 0.000108/0.009585, allocations: 318.8 kB / 0.7594 GB, free: 6.59 MB / 0.6355 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002484/0.009833, allocations: 75.92 kB / 0.7595 GB, free: 6.516 MB / 0.6355 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002586/0.01009, allocations: 98.94 kB / 0.7596 GB, free: 6.414 MB / 0.6355 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0005073/0.0106, allocations: 178.8 kB / 0.7598 GB, free: 6.234 MB / 0.6355 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.668e-06/0.0106, allocations: 4 kB / 0.7598 GB, free: 6.23 MB / 0.6355 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0006018/0.01121, allocations: 218.8 kB / 0.76 GB, free: 6.012 MB / 0.6355 GB
Notification: Performance of prepare postOptimizeDAE: time 2.206e-05/0.01123, allocations: 8 kB / 0.76 GB, free: 6.004 MB / 0.6355 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.65e-06/0.01123, allocations: 1.203 kB / 0.76 GB, free: 6.004 MB / 0.6355 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.667e-05/0.01125, allocations: 0 / 0.76 GB, free: 6.004 MB / 0.6355 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003334/0.01158, allocations: 71.95 kB / 0.7601 GB, free: 5.934 MB / 0.6355 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.043e-06/0.01159, allocations: 0 / 0.7601 GB, free: 5.934 MB / 0.6355 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002276/0.01182, allocations: 55.88 kB / 0.7601 GB, free: 5.879 MB / 0.6355 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.198e-05/0.01184, allocations: 8 kB / 0.7601 GB, free: 5.871 MB / 0.6355 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002399/0.01208, allocations: 117.8 kB / 0.7602 GB, free: 5.746 MB / 0.6355 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.697e-05/0.01211, allocations: 15.88 kB / 0.7602 GB, free: 5.73 MB / 0.6355 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0007502/0.01286, allocations: 301 kB / 0.7605 GB, free: 5.43 MB / 0.6355 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.209e-06/0.01286, allocations: 4 kB / 0.7605 GB, free: 5.426 MB / 0.6355 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.79e-06/0.01287, allocations: 4 kB / 0.7605 GB, free: 5.422 MB / 0.6355 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.548e-06/0.01287, allocations: 1.422 kB / 0.7605 GB, free: 5.422 MB / 0.6355 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000205/0.01308, allocations: 188.6 kB / 0.7607 GB, free: 5.195 MB / 0.6355 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.575e-06/0.01308, allocations: 0 / 0.7607 GB, free: 5.195 MB / 0.6355 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003167/0.0134, allocations: 84.23 kB / 0.7608 GB, free: 5.113 MB / 0.6355 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.663e-06/0.0134, allocations: 3.938 kB / 0.7608 GB, free: 5.109 MB / 0.6355 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.497e-05/0.01343, allocations: 8 kB / 0.7608 GB, free: 5.102 MB / 0.6355 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.815e-06/0.01343, allocations: 0 / 0.7608 GB, free: 5.102 MB / 0.6355 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.986e-06/0.01343, allocations: 7.453 kB / 0.7608 GB, free: 5.098 MB / 0.6355 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0006477/0.01408, allocations: 276.9 kB / 0.7611 GB, free: 4.809 MB / 0.6355 GB
Notification: Performance of postOpt removeConstants (simulation): time 2.3e-05/0.01411, allocations: 11.95 kB / 0.7611 GB, free: 4.797 MB / 0.6355 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.085e-05/0.01414, allocations: 7.922 kB / 0.7611 GB, free: 4.789 MB / 0.6355 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000223/0.01436, allocations: 51.95 kB / 0.7612 GB, free: 4.738 MB / 0.6355 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.796e-05/0.01446, allocations: 21.27 kB / 0.7612 GB, free: 4.719 MB / 0.6355 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.607e-05/0.01447, allocations: 8 kB / 0.7612 GB, free: 4.711 MB / 0.6355 GB
Notification: Performance of sorting global known variables: time 4.402e-05/0.01452, allocations: 87.27 kB / 0.7613 GB, free: 4.625 MB / 0.6355 GB
Notification: Performance of sort global known variables: time 8e-08/0.01452, allocations: 3.938 kB / 0.7613 GB, free: 4.621 MB / 0.6355 GB
Notification: Performance of remove unused functions: time 0.0002779/0.0148, allocations: 32 kB / 0.7613 GB, free: 4.59 MB / 0.6355 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0009554/0.01575, allocations: 0.8182 MB / 0.7621 GB, free: 3.746 MB / 0.6355 GB
Notification: Performance of simCode: created initialization part: time 0.0006162/0.01637, allocations: 183.9 kB / 0.7623 GB, free: 3.566 MB / 0.6355 GB
Notification: Performance of simCode: created event and clocks part: time 3.677e-06/0.01637, allocations: 4 kB / 0.7623 GB, free: 3.562 MB / 0.6355 GB
Notification: Performance of simCode: created simulation system equations: time 0.0002984/0.01667, allocations: 107.9 kB / 0.7624 GB, free: 3.457 MB / 0.6355 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002582/0.01693, allocations: 21.3 kB / 0.7624 GB, free: 3.438 MB / 0.6355 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002513/0.01944, allocations: 1.825 MB / 0.7642 GB, free: 1.523 MB / 0.6355 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 7.761e-05/0.01952, allocations: 103.1 kB / 0.7643 GB, free: 1.402 MB / 0.6355 GB
Notification: Performance of simCode: alias equations: time 0.0001006/0.01962, allocations: 33.34 kB / 0.7643 GB, free: 1.371 MB / 0.6355 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001098/0.01973, allocations: 36.48 kB / 0.7643 GB, free: 1.336 MB / 0.6355 GB
Notification: Performance of SimCode: time 1.002e-06/0.01973, allocations: 0 / 0.7643 GB, free: 1.336 MB / 0.6355 GB
Notification: Performance of buildModelFMU: Generate the FMI files: time 0.09075/0.1105, allocations: 4.809 MB / 0.769 GB, free: 12.75 MB / 0.6512 GB
Notification: Performance of buildModelFMU: Generate platform static: time 7.65/7.76, allocations: 6.969 kB / 0.769 GB, free: 12.75 MB / 0.6512 GB
"
[Timeout remaining time 652]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator  --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK_fmu --startTime=0 --stopTime=864000 --stepSize=17.28 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 52.5]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 17.28 ../Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe 2>&1) [Timeout 52.5]
[Calling sys.exit(0), Time elapsed: 12.477221431210637]