Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001093/0.001093, allocations: 80.44 kB / 19.17 MB, free: 0.7461 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001293/0.001293, allocations: 165.9 kB / 22.45 MB, free: 2.109 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.047/1.047, allocations: 177.1 MB / 202.8 MB, free: 5.734 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.443/1.443, allocations: 273.5 MB / 0.5202 GB, free: 15.02 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2",fmuType="me",version="2.0",platforms={"static"})
"" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.825e-06/2.825e-06, allocations: 0 / 0.7553 GB, free: 10.98 MB / 0.6355 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.945e-05/2.227e-05, allocations: 5.562 kB / 0.7553 GB, free: 10.98 MB / 0.6355 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.08963/0.08965, allocations: 48.89 MB / 0.8031 GB, free: 10.78 MB / 0.6824 GB
Notification: Performance of NFInst.instExpressions: time 0.004722/0.09437, allocations: 5.022 MB / 0.808 GB, free: 5.75 MB / 0.6824 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001705/0.09454, allocations: 23.75 kB / 0.808 GB, free: 5.727 MB / 0.6824 GB
Notification: Performance of NFTyping.typeComponents: time 0.000173/0.09471, allocations: 55.33 kB / 0.808 GB, free: 5.672 MB / 0.6824 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001366/0.09608, allocations: 0.7733 MB / 0.8088 GB, free: 4.895 MB / 0.6824 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.00132/0.0974, allocations: 0.8587 MB / 0.8096 GB, free: 4.051 MB / 0.6824 GB
Notification: Performance of NFFlatten.flatten: time 0.0004535/0.09785, allocations: 0.5092 MB / 0.8101 GB, free: 3.539 MB / 0.6824 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002268/0.09808, allocations: 175.5 kB / 0.8103 GB, free: 3.367 MB / 0.6824 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.000186/0.09827, allocations: 251.3 kB / 0.8105 GB, free: 3.121 MB / 0.6824 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001556/0.09842, allocations: 135.5 kB / 0.8107 GB, free: 2.988 MB / 0.6824 GB
Notification: Performance of NFPackage.collectConstants: time 3.194e-05/0.09845, allocations: 24 kB / 0.8107 GB, free: 2.965 MB / 0.6824 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.529e-05/0.09849, allocations: 32 kB / 0.8107 GB, free: 2.934 MB / 0.6824 GB
Notification: Performance of NFScalarize.scalarize: time 6.21e-05/0.09855, allocations: 75.67 kB / 0.8108 GB, free: 2.859 MB / 0.6824 GB
Notification: Performance of NFVerifyModel.verify: time 9.731e-05/0.09865, allocations: 139.5 kB / 0.8109 GB, free: 2.723 MB / 0.6824 GB
Notification: Performance of NFConvertDAE.convert: time 0.0003548/0.099, allocations: 466.4 kB / 0.8114 GB, free: 2.266 MB / 0.6824 GB
Notification: Performance of FrontEnd - DAE generated: time 3.677e-06/0.09901, allocations: 0 / 0.8114 GB, free: 2.266 MB / 0.6824 GB
Notification: Performance of FrontEnd: time 1.163e-06/0.09901, allocations: 0 / 0.8114 GB, free: 2.266 MB / 0.6824 GB
Notification: Performance of Transformations before backend: time 7.014e-06/0.09901, allocations: 3.938 kB / 0.8114 GB, free: 2.262 MB / 0.6824 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0007022/0.09972, allocations: 0.6175 MB / 0.812 GB, free: 1.609 MB / 0.6824 GB
Notification: Performance of prepare preOptimizeDAE: time 3.972e-05/0.09976, allocations: 12.03 kB / 0.812 GB, free: 1.598 MB / 0.6824 GB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 5.122e-05/0.09981, allocations: 58.73 kB / 0.812 GB, free: 1.531 MB / 0.6824 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.199e-05/0.09986, allocations: 47.98 kB / 0.8121 GB, free: 1.488 MB / 0.6824 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003873/0.1002, allocations: 334.5 kB / 0.8124 GB, free: 1.133 MB / 0.6824 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.32e-05/0.1003, allocations: 24.88 kB / 0.8124 GB, free: 1.109 MB / 0.6824 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.316e-05/0.1003, allocations: 28.38 kB / 0.8125 GB, free: 1.082 MB / 0.6824 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002598/0.1006, allocations: 216.3 kB / 0.8127 GB, free: 0.8672 MB / 0.6824 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.536e-05/0.1006, allocations: 3.953 kB / 0.8127 GB, free: 0.8633 MB / 0.6824 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.799e-05/0.1006, allocations: 12 kB / 0.8127 GB, free: 0.8516 MB / 0.6824 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.893e-06/0.1006, allocations: 4 kB / 0.8127 GB, free: 0.8477 MB / 0.6824 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001916/0.1008, allocations: 149.9 kB / 0.8128 GB, free: 0.7031 MB / 0.6824 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00087/0.1017, allocations: 0.7006 MB / 0.8135 GB, free: 15.95 MB / 0.698 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.000199/0.1019, allocations: 138.5 kB / 0.8136 GB, free: 15.81 MB / 0.698 GB
Notification: Performance of preOpt resolveLoops (simulation): time 9.901e-05/0.102, allocations: 88.81 kB / 0.8137 GB, free: 15.72 MB / 0.698 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.899e-05/0.102, allocations: 4 kB / 0.8137 GB, free: 15.71 MB / 0.698 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.83e-05/0.102, allocations: 34.5 kB / 0.8138 GB, free: 15.67 MB / 0.698 GB
Notification: Performance of pre-optimization done (n=20): time 1.382e-06/0.102, allocations: 4 kB / 0.8138 GB, free: 15.67 MB / 0.698 GB
Notification: Performance of matching and sorting (n=20): time 0.0003179/0.1023, allocations: 244.6 kB / 0.814 GB, free: 15.43 MB / 0.698 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.562e-05/0.1023, allocations: 51.41 kB / 0.8141 GB, free: 15.36 MB / 0.698 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002359/0.1026, allocations: 341.6 kB / 0.8144 GB, free: 15.02 MB / 0.698 GB
Notification: Performance of collectPreVariables (initialization): time 1.739e-05/0.1026, allocations: 41.64 kB / 0.8144 GB, free: 14.97 MB / 0.698 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001017/0.1027, allocations: 212.6 kB / 0.8146 GB, free: 14.76 MB / 0.698 GB
Notification: Performance of collectInitialBindings (initialization): time 4.388e-05/0.1027, allocations: 87.23 kB / 0.8147 GB, free: 14.68 MB / 0.698 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.56e-05/0.1028, allocations: 69.42 kB / 0.8148 GB, free: 14.61 MB / 0.698 GB
Notification: Performance of setup shared object (initialization): time 9.427e-05/0.1029, allocations: 346.8 kB / 0.8151 GB, free: 14.26 MB / 0.698 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 9.664e-05/0.103, allocations: 71.97 kB / 0.8152 GB, free: 14.19 MB / 0.698 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001231/0.1031, allocations: 134.6 kB / 0.8153 GB, free: 14.04 MB / 0.698 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006368/0.1038, allocations: 428.8 kB / 0.8157 GB, free: 13.6 MB / 0.698 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.625e-06/0.1038, allocations: 0 / 0.8157 GB, free: 13.6 MB / 0.698 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.0002901/0.1041, allocations: 302.8 kB / 0.816 GB, free: 13.3 MB / 0.698 GB
Notification: Performance of prepare postOptimizeDAE: time 1.362e-05/0.1041, allocations: 8 kB / 0.816 GB, free: 13.29 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.239e-06/0.1041, allocations: 0 / 0.816 GB, free: 13.29 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.178e-05/0.1041, allocations: 4 kB / 0.816 GB, free: 13.29 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001615/0.1042, allocations: 71.91 kB / 0.8161 GB, free: 13.21 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.925e-06/0.1043, allocations: 7.922 kB / 0.8161 GB, free: 13.21 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 7.579e-05/0.1043, allocations: 31.78 kB / 0.8161 GB, free: 13.18 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.392e-05/0.1043, allocations: 12 kB / 0.8161 GB, free: 13.16 MB / 0.698 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002851/0.1046, allocations: 158.5 kB / 0.8163 GB, free: 13 MB / 0.698 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.182e-05/0.1047, allocations: 35.7 kB / 0.8163 GB, free: 12.96 MB / 0.698 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002308/0.1049, allocations: 201 kB / 0.8165 GB, free: 12.76 MB / 0.698 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.026e-06/0.1049, allocations: 4 kB / 0.8165 GB, free: 12.76 MB / 0.698 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.947e-06/0.1049, allocations: 0 / 0.8165 GB, free: 12.76 MB / 0.698 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.466e-06/0.1049, allocations: 0 / 0.8165 GB, free: 12.76 MB / 0.698 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002535/0.1052, allocations: 312.5 kB / 0.8168 GB, free: 12.41 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.162e-06/0.1052, allocations: 0 / 0.8168 GB, free: 12.41 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000111/0.1053, allocations: 43.86 kB / 0.8168 GB, free: 12.37 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.813e-06/0.1053, allocations: 0 / 0.8168 GB, free: 12.37 MB / 0.698 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.938e-06/0.1053, allocations: 4 kB / 0.8168 GB, free: 12.36 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.284e-06/0.1053, allocations: 4 kB / 0.8169 GB, free: 12.36 MB / 0.698 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.41e-07/0.1053, allocations: 0 / 0.8169 GB, free: 12.36 MB / 0.698 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003199/0.1056, allocations: 370.4 kB / 0.8172 GB, free: 11.98 MB / 0.698 GB
Notification: Performance of postOpt removeConstants (simulation): time 6.76e-05/0.1057, allocations: 55.73 kB / 0.8173 GB, free: 11.93 MB / 0.698 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.317e-05/0.1057, allocations: 4 kB / 0.8173 GB, free: 11.93 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 5.982e-05/0.1058, allocations: 0 / 0.8173 GB, free: 11.93 MB / 0.698 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 3.732e-05/0.1058, allocations: 19.97 kB / 0.8173 GB, free: 11.91 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.739e-06/0.1058, allocations: 0 / 0.8173 GB, free: 11.91 MB / 0.698 GB
Notification: Performance of sorting global known variables: time 0.0001483/0.1059, allocations: 239.1 kB / 0.8175 GB, free: 11.67 MB / 0.698 GB
Notification: Performance of sort global known variables: time 8e-08/0.1059, allocations: 0 / 0.8175 GB, free: 11.67 MB / 0.698 GB
Notification: Performance of remove unused functions: time 0.0002145/0.1062, allocations: 87.84 kB / 0.8176 GB, free: 11.59 MB / 0.698 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0004819/0.1066, allocations: 0.903 MB / 0.8185 GB, free: 10.66 MB / 0.698 GB
Notification: Performance of simCode: created initialization part: time 0.000249/0.1069, allocations: 188 kB / 0.8187 GB, free: 10.48 MB / 0.698 GB
Notification: Performance of simCode: created event and clocks part: time 1.433e-06/0.1069, allocations: 3.938 kB / 0.8187 GB, free: 10.47 MB / 0.698 GB
Notification: Performance of simCode: created simulation system equations: time 7.494e-05/0.107, allocations: 71.91 kB / 0.8187 GB, free: 10.4 MB / 0.698 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003152/0.1073, allocations: 83.66 kB / 0.8188 GB, free: 10.33 MB / 0.698 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002385/0.1097, allocations: 2.897 MB / 0.8216 GB, free: 7.312 MB / 0.698 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001223/0.1098, allocations: 191.1 kB / 0.8218 GB, free: 7.109 MB / 0.698 GB
Notification: Performance of simCode: alias equations: time 9.452e-05/0.1099, allocations: 38.95 kB / 0.8219 GB, free: 7.07 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001202/0.11, allocations: 120.5 kB / 0.822 GB, free: 6.953 MB / 0.698 GB
Notification: Performance of SimCode: time 5.31e-07/0.11, allocations: 0 / 0.822 GB, free: 6.953 MB / 0.698 GB
Notification: Performance of buildModelFMU: Generate the FMI files: time 0.08232/0.1923, allocations: 7.968 MB / 0.8298 GB, free: 15.29 MB / 0.7137 GB
Notification: Performance of buildModelFMU: Generate platform static: time 7.347/7.539, allocations: 0 / 0.8298 GB, free: 15.29 MB / 0.7137 GB
"
[Timeout remaining time 652]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator  --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2_fmu --startTime=0 --stopTime=5 --stepSize=0.005 --timeout=50 --tolerance=1e-12 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 52.5]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy_res.csv --start-time 0 --stop-time 5 --timeout 50 --relative-tolerance 1e-12 --interface-type ModelExchange --solver CVode --output-interval 0.005 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe 2>&1) [Timeout 52.5]
fmpy timed out simulating the FMU
[Calling sys.exit(0), Time elapsed: 12.219082662835717]