Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007082/0.0007082, allocations: 80.44 kB / 19.17 MB, free: 0.7422 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008198/0.0008198, allocations: 165.9 kB / 22.46 MB, free: 2.105 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1/1, allocations: 177.1 MB / 202.8 MB, free: 5.738 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.494/1.494, allocations: 273.5 MB / 0.5202 GB, free: 15.01 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 4.659e-06/4.659e-06, allocations: 0 / 0.7553 GB, free: 10.5 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.061e-05/3.527e-05, allocations: 3.594 kB / 0.7553 GB, free: 10.49 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.001816/0.001851, allocations: 0.5203 MB / 0.7558 GB, free: 9.988 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.0001984/0.002049, allocations: 23.89 kB / 0.7558 GB, free: 9.965 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 3.598e-05/0.002085, allocations: 0 / 0.7558 GB, free: 9.965 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 1.763e-05/0.002103, allocations: 0 / 0.7558 GB, free: 9.965 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 5.586e-05/0.002159, allocations: 9.578 kB / 0.7558 GB, free: 9.957 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0001392/0.002298, allocations: 7.984 kB / 0.7559 GB, free: 9.949 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 7.174e-05/0.00237, allocations: 11.94 kB / 0.7559 GB, free: 9.941 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 6.269e-05/0.002432, allocations: 15.97 kB / 0.7559 GB, free: 9.926 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 5.205e-05/0.002485, allocations: 9.312 kB / 0.7559 GB, free: 9.918 MB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 9.033e-05/0.002575, allocations: 5.297 kB / 0.7559 GB, free: 9.914 MB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 2.416e-05/0.002599, allocations: 4 kB / 0.7559 GB, free: 9.91 MB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 9.888e-06/0.002609, allocations: 0 / 0.7559 GB, free: 9.91 MB / 0.5887 GB Notification: Performance of NFScalarize.scalarize: time 2.161e-05/0.00263, allocations: 7.984 kB / 0.7559 GB, free: 9.902 MB / 0.5887 GB Notification: Performance of NFVerifyModel.verify: time 2.39e-05/0.002654, allocations: 5.312 kB / 0.7559 GB, free: 9.898 MB / 0.5887 GB Notification: Performance of NFConvertDAE.convert: time 8.153e-05/0.002736, allocations: 13.17 kB / 0.7559 GB, free: 9.887 MB / 0.5887 GB Notification: Performance of FrontEnd - DAE generated: time 2.996e-06/0.002739, allocations: 0 / 0.7559 GB, free: 9.887 MB / 0.5887 GB Notification: Performance of FrontEnd: time 1.563e-06/0.00274, allocations: 0 / 0.7559 GB, free: 9.887 MB / 0.5887 GB Notification: Performance of Transformations before backend: time 4.739e-06/0.002745, allocations: 0 / 0.7559 GB, free: 9.887 MB / 0.5887 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3 * Number of variables: 3 Notification: Performance of Generate backend data structure: time 0.0004468/0.003192, allocations: 266.3 kB / 0.7562 GB, free: 9.594 MB / 0.5887 GB Notification: Performance of prepare preOptimizeDAE: time 5.072e-05/0.003243, allocations: 12.03 kB / 0.7562 GB, free: 9.582 MB / 0.5887 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 4.313e-05/0.003286, allocations: 32.06 kB / 0.7562 GB, free: 9.543 MB / 0.5887 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 2.651e-05/0.003312, allocations: 0.9375 kB / 0.7562 GB, free: 9.543 MB / 0.5887 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001093/0.003422, allocations: 113.8 kB / 0.7563 GB, free: 9.406 MB / 0.5887 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.273e-05/0.003434, allocations: 384 / 0.7563 GB, free: 9.406 MB / 0.5887 GB Notification: Performance of preOpt expandDerOperator (simulation): time 2.807e-05/0.003462, allocations: 12.3 kB / 0.7563 GB, free: 9.395 MB / 0.5887 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001104/0.003573, allocations: 34.27 kB / 0.7564 GB, free: 9.355 MB / 0.5887 GB Notification: Performance of preOpt findStateOrder (simulation): time 9.207e-06/0.003582, allocations: 192 / 0.7564 GB, free: 9.355 MB / 0.5887 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.24e-05/0.003595, allocations: 12.3 kB / 0.7564 GB, free: 9.344 MB / 0.5887 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.502e-06/0.003601, allocations: 4.125 kB / 0.7564 GB, free: 9.34 MB / 0.5887 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 3.504e-05/0.003636, allocations: 7.328 kB / 0.7564 GB, free: 9.336 MB / 0.5887 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001714/0.003807, allocations: 124.8 kB / 0.7565 GB, free: 9.172 MB / 0.5887 GB Notification: Performance of preOpt comSubExp (simulation): time 0.000364/0.004172, allocations: 62.53 kB / 0.7566 GB, free: 9.102 MB / 0.5887 GB Notification: Performance of preOpt resolveLoops (simulation): time 2.834e-05/0.0042, allocations: 22.53 kB / 0.7566 GB, free: 9.078 MB / 0.5887 GB Notification: Performance of preOpt evalFunc (simulation): time 9.157e-06/0.004209, allocations: 0 / 0.7566 GB, free: 9.078 MB / 0.5887 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.015e-05/0.004229, allocations: 30.56 kB / 0.7566 GB, free: 9.039 MB / 0.5887 GB Notification: Performance of pre-optimization done (n=3): time 1.142e-06/0.00423, allocations: 0 / 0.7566 GB, free: 9.039 MB / 0.5887 GB Notification: Performance of matching and sorting (n=3): time 0.000153/0.004383, allocations: 57.69 kB / 0.7567 GB, free: 8.977 MB / 0.5887 GB Notification: Performance of inlineWhenForInitialization (initialization): time 3.125e-05/0.004415, allocations: 59.34 kB / 0.7567 GB, free: 8.906 MB / 0.5887 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.595e-05/0.00448, allocations: 105.8 kB / 0.7568 GB, free: 8.793 MB / 0.5887 GB Notification: Performance of collectPreVariables (initialization): time 1.092e-05/0.004491, allocations: 25.7 kB / 0.7569 GB, free: 8.762 MB / 0.5887 GB Notification: Performance of collectInitialEqns (initialization): time 3.127e-05/0.004523, allocations: 88.14 kB / 0.7569 GB, free: 8.672 MB / 0.5887 GB Notification: Performance of collectInitialBindings (initialization): time 2.609e-05/0.004549, allocations: 11.84 kB / 0.757 GB, free: 8.66 MB / 0.5887 GB Notification: Performance of simplifyInitialFunctions (initialization): time 2.988e-05/0.004579, allocations: 21.66 kB / 0.757 GB, free: 8.633 MB / 0.5887 GB Notification: Performance of setup shared object (initialization): time 8.911e-05/0.004668, allocations: 318.8 kB / 0.7573 GB, free: 8.312 MB / 0.5887 GB Notification: Performance of preBalanceInitialSystem (initialization): time 1.665e-05/0.004684, allocations: 8 kB / 0.7573 GB, free: 8.305 MB / 0.5887 GB Notification: Performance of partitionIndependentBlocks (initialization): time 1.39e-05/0.004698, allocations: 9.312 kB / 0.7573 GB, free: 8.297 MB / 0.5887 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0002171/0.004915, allocations: 64.81 kB / 0.7574 GB, free: 8.23 MB / 0.5887 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.814e-06/0.004917, allocations: 0 / 0.7574 GB, free: 8.23 MB / 0.5887 GB Notification: Performance of matching and sorting (n=6) (initialization): time 7.966e-05/0.004997, allocations: 69.64 kB / 0.7574 GB, free: 8.156 MB / 0.5887 GB Notification: Performance of prepare postOptimizeDAE: time 1.283e-05/0.00501, allocations: 4 kB / 0.7574 GB, free: 8.152 MB / 0.5887 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.18e-06/0.005015, allocations: 0 / 0.7574 GB, free: 8.152 MB / 0.5887 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.339e-05/0.005028, allocations: 0 / 0.7574 GB, free: 8.152 MB / 0.5887 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 3.657e-05/0.005065, allocations: 15.88 kB / 0.7574 GB, free: 8.137 MB / 0.5887 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.34e-06/0.00507, allocations: 0 / 0.7574 GB, free: 8.137 MB / 0.5887 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.574e-05/0.005086, allocations: 4 kB / 0.7574 GB, free: 8.133 MB / 0.5887 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.693e-06/0.005093, allocations: 8 kB / 0.7575 GB, free: 8.125 MB / 0.5887 GB Warning: Assuming fixed start value for the following 3 variables: V:VARIABLE(start = 10.0 fixed = true ) \"count of viral particles\" type: Real I:VARIABLE(start = 0.0 fixed = true ) \"count of infectious cells\" type: Real T:VARIABLE(start = 1e6 fixed = true ) \"count of target(susceptible) cells\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 1 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (6): * Single equations (assignments): 6 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001531/0.005246, allocations: 113.8 kB / 0.7576 GB, free: 8.004 MB / 0.5887 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.693e-06/0.005252, allocations: 5.266 kB / 0.7576 GB, free: 8 MB / 0.5887 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.488e-05/0.005277, allocations: 11.69 kB / 0.7576 GB, free: 7.984 MB / 0.5887 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.715e-06/0.00528, allocations: 0 / 0.7576 GB, free: 7.984 MB / 0.5887 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.651e-06/0.005286, allocations: 3.938 kB / 0.7576 GB, free: 7.98 MB / 0.5887 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.745e-06/0.005288, allocations: 0 / 0.7576 GB, free: 7.98 MB / 0.5887 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 8.658e-05/0.005375, allocations: 133.1 kB / 0.7577 GB, free: 7.809 MB / 0.5887 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.624e-06/0.005377, allocations: 4 kB / 0.7577 GB, free: 7.805 MB / 0.5887 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 4.834e-05/0.005425, allocations: 8 kB / 0.7577 GB, free: 7.797 MB / 0.5887 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.505e-06/0.005427, allocations: 0 / 0.7577 GB, free: 7.797 MB / 0.5887 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.816e-06/0.005436, allocations: 0 / 0.7577 GB, free: 7.797 MB / 0.5887 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.42e-07/0.005437, allocations: 0 / 0.7577 GB, free: 7.797 MB / 0.5887 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.545e-06/0.00544, allocations: 7.359 kB / 0.7577 GB, free: 7.793 MB / 0.5887 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001373/0.005577, allocations: 94.36 kB / 0.7578 GB, free: 7.684 MB / 0.5887 GB Notification: Performance of postOpt removeConstants (simulation): time 1.031e-05/0.005587, allocations: 7.953 kB / 0.7578 GB, free: 7.676 MB / 0.5887 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.288e-05/0.0056, allocations: 0 / 0.7578 GB, free: 7.676 MB / 0.5887 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 1.224e-05/0.005612, allocations: 0 / 0.7578 GB, free: 7.676 MB / 0.5887 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 2.167e-05/0.005634, allocations: 11.97 kB / 0.7578 GB, free: 7.664 MB / 0.5887 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.995e-06/0.005637, allocations: 0 / 0.7578 GB, free: 7.664 MB / 0.5887 GB Notification: Performance of sorting global known variables: time 3.352e-05/0.00567, allocations: 87.28 kB / 0.7579 GB, free: 7.578 MB / 0.5887 GB Notification: Performance of sort global known variables: time 6e-08/0.005671, allocations: 0 / 0.7579 GB, free: 7.578 MB / 0.5887 GB Notification: Performance of remove unused functions: time 0.0001314/0.005802, allocations: 4 kB / 0.7579 GB, free: 7.574 MB / 0.5887 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 3 (V,I,T) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (3): * Single equations (assignments): 3 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003395/0.006141, allocations: 0.6202 MB / 0.7585 GB, free: 6.926 MB / 0.5887 GB Notification: Performance of simCode: created initialization part: time 9.645e-05/0.006238, allocations: 20.03 kB / 0.7586 GB, free: 6.906 MB / 0.5887 GB Notification: Performance of simCode: created event and clocks part: time 4.459e-06/0.006242, allocations: 8 kB / 0.7586 GB, free: 6.898 MB / 0.5887 GB Notification: Performance of simCode: created simulation system equations: time 1.342e-05/0.006256, allocations: 5.422 kB / 0.7586 GB, free: 6.895 MB / 0.5887 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001372/0.006393, allocations: 14.69 kB / 0.7586 GB, free: 6.883 MB / 0.5887 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009653/0.007358, allocations: 1.193 MB / 0.7597 GB, free: 5.605 MB / 0.5887 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 4.629e-05/0.007405, allocations: 67.33 kB / 0.7598 GB, free: 5.52 MB / 0.5887 GB Notification: Performance of simCode: alias equations: time 1.873e-05/0.007423, allocations: 4 kB / 0.7598 GB, free: 5.516 MB / 0.5887 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 4.018e-05/0.007463, allocations: 12.5 kB / 0.7598 GB, free: 5.504 MB / 0.5887 GB Notification: Performance of SimCode: time 5.71e-07/0.007464, allocations: 0 / 0.7598 GB, free: 5.504 MB / 0.5887 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.08432/0.09178, allocations: 1.945 MB / 0.7617 GB, free: 3.758 MB / 0.5887 GB Notification: Performance of buildModelFMU: Generate platform static: time 7.197/7.288, allocations: 10.25 kB / 0.7617 GB, free: 3.75 MB / 0.5887 GB " [Timeout remaining time 653] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1_fmu --startTime=0 --stopTime=1 --stepSize=0.002 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy_res.csv --start-time 0 --stop-time 1 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 0.002 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe 2>&1) [Timeout 52.5] [Calling sys.exit(0), Time elapsed: 11.413694510236382]