Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001046/0.001046, allocations: 84.53 kB / 19.93 MB, free: 4.609 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009582/0.0009582, allocations: 174.3 kB / 23.21 MB, free: 1.328 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9353/0.9353, allocations: 177.1 MB / 203.5 MB, free: 5.742 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.507/1.507, allocations: 273.5 MB / 0.5209 GB, free: 14.91 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.164e-06/2.164e-06, allocations: 1.312 kB / 0.7559 GB, free: 10.55 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.019e-05/3.235e-05, allocations: 2.281 kB / 0.7559 GB, free: 10.55 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.00764/0.007672, allocations: 10.25 MB / 0.7659 GB, free: 340 kB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.005145/0.01282, allocations: 2.472 MB / 0.7683 GB, free: 13.86 MB / 0.6043 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001595/0.01441, allocations: 24 kB / 0.7683 GB, free: 13.84 MB / 0.6043 GB Notification: Performance of NFTyping.typeComponents: time 0.0006689/0.01508, allocations: 297 kB / 0.7686 GB, free: 13.55 MB / 0.6043 GB Notification: Performance of NFTyping.typeBindings: time 0.001909/0.01699, allocations: 0.7899 MB / 0.7694 GB, free: 12.75 MB / 0.6043 GB Notification: Performance of NFTyping.typeClassSections: time 0.001213/0.0182, allocations: 0.6002 MB / 0.7699 GB, free: 12.15 MB / 0.6043 GB Notification: Performance of NFFlatten.flatten: time 0.002693/0.0209, allocations: 2.874 MB / 0.7728 GB, free: 9.266 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002621/0.02352, allocations: 2.993 MB / 0.7757 GB, free: 6.215 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003208/0.02673, allocations: 2.563 MB / 0.7782 GB, free: 3.648 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.003131/0.02986, allocations: 1.956 MB / 0.7801 GB, free: 1.688 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0009275/0.03078, allocations: 424 kB / 0.7805 GB, free: 1.273 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0008599/0.03164, allocations: 435.9 kB / 0.7809 GB, free: 0.8477 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0006159/0.03226, allocations: 0.9232 MB / 0.7818 GB, free: 15.92 MB / 0.6199 GB Notification: Performance of NFVerifyModel.verify: time 0.001393/0.03365, allocations: 1.294 MB / 0.7831 GB, free: 14.62 MB / 0.6199 GB Notification: Performance of NFConvertDAE.convert: time 0.003444/0.0371, allocations: 3.764 MB / 0.7867 GB, free: 10.85 MB / 0.6199 GB Notification: Performance of FrontEnd - DAE generated: time 7.654e-06/0.0371, allocations: 0 / 0.7867 GB, free: 10.85 MB / 0.6199 GB Notification: Performance of FrontEnd: time 2.285e-06/0.03711, allocations: 0 / 0.7867 GB, free: 10.85 MB / 0.6199 GB Notification: Performance of Transformations before backend: time 8.941e-05/0.0372, allocations: 0 / 0.7867 GB, free: 10.85 MB / 0.6199 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.005215/0.04241, allocations: 2.815 MB / 0.7895 GB, free: 7.941 MB / 0.6199 GB Notification: Performance of prepare preOptimizeDAE: time 5.214e-05/0.04246, allocations: 12.03 kB / 0.7895 GB, free: 7.93 MB / 0.6199 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005099/0.04297, allocations: 231.5 kB / 0.7897 GB, free: 7.703 MB / 0.6199 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001587/0.04456, allocations: 1.128 MB / 0.7908 GB, free: 6.547 MB / 0.6199 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.533e-05/0.04465, allocations: 131.9 kB / 0.791 GB, free: 6.418 MB / 0.6199 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003846/0.04503, allocations: 204.3 kB / 0.7912 GB, free: 6.219 MB / 0.6199 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.004714/0.04974, allocations: 3.775 MB / 0.7948 GB, free: 2.309 MB / 0.6199 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.139e-05/0.0498, allocations: 11.91 kB / 0.7948 GB, free: 2.297 MB / 0.6199 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002208/0.05003, allocations: 79.92 kB / 0.7949 GB, free: 2.219 MB / 0.6199 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.002e-05/0.05006, allocations: 44 kB / 0.795 GB, free: 2.176 MB / 0.6199 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.004503/0.05456, allocations: 3.495 MB / 0.7984 GB, free: 14.65 MB / 0.6355 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01331/0.06787, allocations: 7.714 MB / 0.8059 GB, free: 6.875 MB / 0.6355 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002997/0.07087, allocations: 1.732 MB / 0.8076 GB, free: 5.109 MB / 0.6355 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001815/0.07268, allocations: 1.259 MB / 0.8088 GB, free: 3.824 MB / 0.6355 GB Notification: Performance of preOpt evalFunc (simulation): time 7.301e-05/0.07275, allocations: 22 kB / 0.8089 GB, free: 3.801 MB / 0.6355 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00235/0.07511, allocations: 2.14 MB / 0.8109 GB, free: 1.57 MB / 0.6355 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.004755/0.07986, allocations: 1.772 MB / 0.8127 GB, free: 15.84 MB / 0.6512 GB Notification: Performance of pre-optimization done (n=198): time 1.881e-05/0.07988, allocations: 4 kB / 0.8127 GB, free: 15.84 MB / 0.6512 GB Notification: Performance of matching and sorting (n=202): time 0.01378/0.09366, allocations: 7.923 MB / 0.8204 GB, free: 7.785 MB / 0.6512 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001745/0.09384, allocations: 405.8 kB / 0.8208 GB, free: 7.301 MB / 0.6512 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001019/0.09486, allocations: 0.9029 MB / 0.8217 GB, free: 6.375 MB / 0.6512 GB Notification: Performance of collectPreVariables (initialization): time 0.000194/0.09505, allocations: 73.7 kB / 0.8218 GB, free: 6.297 MB / 0.6512 GB Notification: Performance of collectInitialEqns (initialization): time 0.000506/0.09556, allocations: 0.7011 MB / 0.8224 GB, free: 5.586 MB / 0.6512 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005294/0.09609, allocations: 0.7166 MB / 0.8231 GB, free: 4.863 MB / 0.6512 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000709/0.09679, allocations: 0.5856 MB / 0.8237 GB, free: 4.273 MB / 0.6512 GB Notification: Performance of setup shared object (initialization): time 8.282e-05/0.09688, allocations: 305.1 kB / 0.824 GB, free: 3.973 MB / 0.6512 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002312/0.09919, allocations: 1.567 MB / 0.8255 GB, free: 2.344 MB / 0.6512 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002195/0.1014, allocations: 2.091 MB / 0.8276 GB, free: 15.97 MB / 0.6668 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.06377/0.1652, allocations: 24.76 MB / 0.8518 GB, free: 7.078 MB / 0.6824 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.822e-05/0.1652, allocations: 4 kB / 0.8518 GB, free: 7.074 MB / 0.6824 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.006654/0.1718, allocations: 4.13 MB / 0.8558 GB, free: 2.824 MB / 0.6824 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001384/0.172, allocations: 269.8 kB / 0.8561 GB, free: 2.508 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.231e-05/0.172, allocations: 12 kB / 0.8561 GB, free: 2.496 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.483e-05/0.172, allocations: 20 kB / 0.8561 GB, free: 2.477 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.3929/0.5649, allocations: 0.8258 MB / 0.8569 GB, free: 104.7 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.756e-05/0.565, allocations: 31.62 kB / 0.8569 GB, free: 104.7 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002104/0.5671, allocations: 114 kB / 0.857 GB, free: 104.7 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003252/0.5674, allocations: 212.1 kB / 0.8572 GB, free: 104.7 MB / 0.6824 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001293/0.5687, allocations: 0.637 MB / 0.8579 GB, free: 104.4 MB / 0.6824 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003502/0.569, allocations: 161.1 kB / 0.858 GB, free: 104.4 MB / 0.6824 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.005243/0.5743, allocations: 3.57 MB / 0.8615 GB, free: 103.5 MB / 0.6824 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.145e-05/0.5743, allocations: 16.69 kB / 0.8615 GB, free: 103.5 MB / 0.6824 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 9.157e-06/0.5743, allocations: 2.906 kB / 0.8615 GB, free: 103.5 MB / 0.6824 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.487e-05/0.5743, allocations: 14.3 kB / 0.8615 GB, free: 103.5 MB / 0.6824 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.006074/0.5804, allocations: 4.546 MB / 0.866 GB, free: 101.5 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.071e-06/0.5804, allocations: 0 / 0.866 GB, free: 101.5 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001497/0.5819, allocations: 456.2 kB / 0.8664 GB, free: 101.4 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.19e-05/0.5819, allocations: 10.98 kB / 0.8664 GB, free: 101.4 MB / 0.6824 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001743/0.5821, allocations: 106.7 kB / 0.8665 GB, free: 101.4 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.287e-06/0.5821, allocations: 7.188 kB / 0.8665 GB, free: 101.4 MB / 0.6824 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.926e-06/0.5821, allocations: 2.062 kB / 0.8665 GB, free: 101.4 MB / 0.6824 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.005659/0.5877, allocations: 4.728 MB / 0.8711 GB, free: 99.18 MB / 0.6824 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0009011/0.5886, allocations: 391.8 kB / 0.8715 GB, free: 99.08 MB / 0.6824 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002586/0.5889, allocations: 62.03 kB / 0.8716 GB, free: 99.05 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009001/0.5898, allocations: 89.31 kB / 0.8717 GB, free: 99.02 MB / 0.6824 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003354/0.5901, allocations: 161.4 kB / 0.8718 GB, free: 98.99 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001879/0.5903, allocations: 117.5 kB / 0.8719 GB, free: 98.98 MB / 0.6824 GB Notification: Performance of sorting global known variables: time 0.0007718/0.5911, allocations: 0.6572 MB / 0.8726 GB, free: 98.69 MB / 0.6824 GB Notification: Performance of sort global known variables: time 1.61e-07/0.5911, allocations: 1.312 kB / 0.8726 GB, free: 98.69 MB / 0.6824 GB Notification: Performance of remove unused functions: time 0.002039/0.5931, allocations: 0.6328 MB / 0.8732 GB, free: 98.63 MB / 0.6824 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003025/0.5934, allocations: 208 kB / 0.8734 GB, free: 98.48 MB / 0.6824 GB Notification: Performance of simCode: created initialization part: time 0.005063/0.5985, allocations: 3.648 MB / 0.8769 GB, free: 96.5 MB / 0.6824 GB Notification: Performance of simCode: created event and clocks part: time 4.658e-06/0.5985, allocations: 1.625 kB / 0.8769 GB, free: 96.5 MB / 0.6824 GB Notification: Performance of simCode: created simulation system equations: time 0.001979/0.6005, allocations: 1.579 MB / 0.8785 GB, free: 95.68 MB / 0.6824 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001794/0.6023, allocations: 486.7 kB / 0.879 GB, free: 95.53 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007626/0.6099, allocations: 5.442 MB / 0.8843 GB, free: 92.45 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008289/0.6107, allocations: 0.7727 MB / 0.885 GB, free: 92.28 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001844/0.6126, allocations: 376.4 kB / 0.8854 GB, free: 92.25 MB / 0.6824 GB Notification: Performance of SimCode: time 2.174e-06/0.6126, allocations: 0 / 0.8854 GB, free: 92.25 MB / 0.6824 GB Notification: Performance of Templates: time 0.04419/0.6568, allocations: 33.68 MB / 0.9183 GB, free: 67.7 MB / 0.6824 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 8.549743518000469]