Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001004/0.001004, allocations: 84.44 kB / 19.93 MB, free: 4.613 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009521/0.0009521, allocations: 173.9 kB / 23.21 MB, free: 1.332 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9643/0.9643, allocations: 177.1 MB / 203.5 MB, free: 5.762 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.612/1.612, allocations: 273.5 MB / 0.5209 GB, free: 15.07 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.164e-06/2.164e-06, allocations: 0 / 0.7563 GB, free: 10.29 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.87e-05/3.087e-05, allocations: 4.812 kB / 0.7563 GB, free: 10.29 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen): time 0.003801/0.003832, allocations: 3.988 MB / 0.7602 GB, free: 6.336 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.001561/0.005393, allocations: 1.173 MB / 0.7613 GB, free: 5.172 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001729/0.005566, allocations: 7.938 kB / 0.7613 GB, free: 5.164 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0004267/0.005993, allocations: 146.5 kB / 0.7615 GB, free: 5.023 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0002523/0.006245, allocations: 177.5 kB / 0.7616 GB, free: 4.855 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004565/0.006702, allocations: 215.3 kB / 0.7618 GB, free: 4.645 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.0004494/0.007151, allocations: 0.5788 MB / 0.7624 GB, free: 4.062 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0001914/0.007343, allocations: 92.8 kB / 0.7625 GB, free: 3.969 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0002517/0.007594, allocations: 307.3 kB / 0.7628 GB, free: 3.668 MB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0002675/0.007862, allocations: 179.4 kB / 0.7629 GB, free: 3.492 MB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 5.178e-05/0.007914, allocations: 40 kB / 0.763 GB, free: 3.453 MB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002148/0.008128, allocations: 183.3 kB / 0.7632 GB, free: 3.273 MB / 0.5887 GB Notification: Performance of NFScalarize.scalarize: time 0.000103/0.008231, allocations: 107.5 kB / 0.7633 GB, free: 3.168 MB / 0.5887 GB Notification: Performance of NFVerifyModel.verify: time 0.0001438/0.008375, allocations: 175.6 kB / 0.7634 GB, free: 2.996 MB / 0.5887 GB Notification: Performance of NFConvertDAE.convert: time 0.0005337/0.008909, allocations: 0.6385 MB / 0.764 GB, free: 2.355 MB / 0.5887 GB Notification: Performance of FrontEnd - DAE generated: time 2.865e-06/0.008912, allocations: 0 / 0.764 GB, free: 2.355 MB / 0.5887 GB Notification: Performance of FrontEnd: time 1.713e-06/0.008913, allocations: 0 / 0.764 GB, free: 2.355 MB / 0.5887 GB Notification: Performance of Transformations before backend: time 7.674e-06/0.008921, allocations: 7.938 kB / 0.7641 GB, free: 2.348 MB / 0.5887 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 81 * Number of variables: 81 Notification: Performance of Generate backend data structure: time 0.001024/0.009945, allocations: 0.8737 MB / 0.7649 GB, free: 1.402 MB / 0.5887 GB Notification: Performance of prepare preOptimizeDAE: time 4.263e-05/0.009988, allocations: 12.03 kB / 0.7649 GB, free: 1.391 MB / 0.5887 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002023/0.01019, allocations: 80.53 kB / 0.765 GB, free: 1.312 MB / 0.5887 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003124/0.0105, allocations: 283.8 kB / 0.7653 GB, free: 1.008 MB / 0.5887 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.606e-05/0.01053, allocations: 29.03 kB / 0.7653 GB, free: 0.9805 MB / 0.5887 GB Notification: Performance of preOpt expandDerOperator (simulation): time 5.392e-05/0.01058, allocations: 40.33 kB / 0.7653 GB, free: 0.9414 MB / 0.5887 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005718/0.01115, allocations: 0.5953 MB / 0.7659 GB, free: 316 kB / 0.5887 GB Notification: Performance of preOpt findStateOrder (simulation): time 1.921e-05/0.01117, allocations: 4 kB / 0.7659 GB, free: 312 kB / 0.5887 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.605e-05/0.0112, allocations: 12 kB / 0.7659 GB, free: 300 kB / 0.5887 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.308e-06/0.01121, allocations: 8 kB / 0.7659 GB, free: 292 kB / 0.5887 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000483/0.01169, allocations: 0.5066 MB / 0.7664 GB, free: 15.75 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001148/0.01284, allocations: 0.972 MB / 0.7674 GB, free: 14.73 MB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0005707/0.01341, allocations: 0.5092 MB / 0.7679 GB, free: 14.18 MB / 0.6043 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002962/0.01371, allocations: 393.9 kB / 0.7683 GB, free: 13.77 MB / 0.6043 GB Notification: Performance of preOpt evalFunc (simulation): time 2.604e-05/0.01373, allocations: 8.266 kB / 0.7683 GB, free: 13.76 MB / 0.6043 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005012/0.01423, allocations: 0.6729 MB / 0.7689 GB, free: 13.01 MB / 0.6043 GB Notification: Performance of pre-optimization done (n=52): time 2.815e-06/0.01424, allocations: 4 kB / 0.7689 GB, free: 13 MB / 0.6043 GB Notification: Performance of matching and sorting (n=55): time 0.00229/0.01653, allocations: 2.45 MB / 0.7713 GB, free: 10.38 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001429/0.01667, allocations: 362.6 kB / 0.7717 GB, free: 9.941 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000297/0.01697, allocations: 389.6 kB / 0.772 GB, free: 9.551 MB / 0.6043 GB Notification: Performance of collectPreVariables (initialization): time 3.172e-05/0.017, allocations: 41.69 kB / 0.7721 GB, free: 9.504 MB / 0.6043 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001286/0.01713, allocations: 217 kB / 0.7723 GB, free: 9.289 MB / 0.6043 GB Notification: Performance of collectInitialBindings (initialization): time 9.265e-05/0.01722, allocations: 178.5 kB / 0.7725 GB, free: 9.113 MB / 0.6043 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001097/0.01733, allocations: 102.2 kB / 0.7725 GB, free: 9.004 MB / 0.6043 GB Notification: Performance of setup shared object (initialization): time 0.0001095/0.01744, allocations: 362.8 kB / 0.7729 GB, free: 8.641 MB / 0.6043 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003443/0.01778, allocations: 456.9 kB / 0.7733 GB, free: 8.156 MB / 0.6043 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004313/0.01821, allocations: 0.5716 MB / 0.7739 GB, free: 7.492 MB / 0.6043 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001465/0.01968, allocations: 1.81 MB / 0.7757 GB, free: 5.5 MB / 0.6043 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.465e-06/0.01968, allocations: 0 / 0.7757 GB, free: 5.5 MB / 0.6043 GB Notification: Performance of matching and sorting (n=79) (initialization): time 0.0009357/0.02062, allocations: 1.13 MB / 0.7768 GB, free: 4.293 MB / 0.6043 GB Notification: Performance of prepare postOptimizeDAE: time 8.828e-05/0.02071, allocations: 182.2 kB / 0.7769 GB, free: 4.078 MB / 0.6043 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.856e-06/0.02071, allocations: 4.469 kB / 0.7769 GB, free: 4.074 MB / 0.6043 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.89e-05/0.02073, allocations: 16 kB / 0.777 GB, free: 4.059 MB / 0.6043 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000229/0.02096, allocations: 111.8 kB / 0.7771 GB, free: 3.949 MB / 0.6043 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.598e-06/0.02097, allocations: 4 kB / 0.7771 GB, free: 3.945 MB / 0.6043 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001511/0.02112, allocations: 27.98 kB / 0.7771 GB, free: 3.918 MB / 0.6043 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.464e-05/0.0212, allocations: 63.88 kB / 0.7772 GB, free: 3.855 MB / 0.6043 GB Warning: Assuming fixed start value for the following 14 variables: central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 16 * Number of states: 0 () * Number of discrete variables: 31 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,CYP2C19.status,SLC22A2.status,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (73): * Single equations (assignments): 67 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003239/0.02152, allocations: 401.8 kB / 0.7775 GB, free: 3.43 MB / 0.6043 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 8.037e-05/0.0216, allocations: 59.64 kB / 0.7776 GB, free: 3.371 MB / 0.6043 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 6.874e-05/0.02167, allocations: 49.03 kB / 0.7776 GB, free: 3.32 MB / 0.6043 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.33e-06/0.02168, allocations: 4 kB / 0.7776 GB, free: 3.316 MB / 0.6043 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 7.574e-06/0.02168, allocations: 0 / 0.7776 GB, free: 3.316 MB / 0.6043 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.755e-06/0.02169, allocations: 3.984 kB / 0.7776 GB, free: 3.312 MB / 0.6043 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001291/0.02298, allocations: 1.481 MB / 0.7791 GB, free: 1.734 MB / 0.6043 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.001e-06/0.02299, allocations: 8 kB / 0.7791 GB, free: 1.727 MB / 0.6043 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002137/0.0232, allocations: 79.89 kB / 0.7792 GB, free: 1.648 MB / 0.6043 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.2e-06/0.02321, allocations: 0 / 0.7792 GB, free: 1.648 MB / 0.6043 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.969e-05/0.02324, allocations: 19.98 kB / 0.7792 GB, free: 1.629 MB / 0.6043 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.779e-06/0.02324, allocations: 4 kB / 0.7792 GB, free: 1.625 MB / 0.6043 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.644e-06/0.02324, allocations: 0 / 0.7792 GB, free: 1.625 MB / 0.6043 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001313/0.02456, allocations: 1.646 MB / 0.7808 GB, free: 15.87 MB / 0.6199 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001233/0.02468, allocations: 87.66 kB / 0.7809 GB, free: 15.79 MB / 0.6199 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 5.563e-05/0.02473, allocations: 23.98 kB / 0.7809 GB, free: 15.76 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001196/0.02485, allocations: 19.98 kB / 0.7809 GB, free: 15.74 MB / 0.6199 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001078/0.02496, allocations: 39.94 kB / 0.781 GB, free: 15.7 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.277e-05/0.02502, allocations: 62.92 kB / 0.781 GB, free: 15.64 MB / 0.6199 GB Notification: Performance of sorting global known variables: time 0.0001974/0.02522, allocations: 275.1 kB / 0.7813 GB, free: 15.38 MB / 0.6199 GB Notification: Performance of sort global known variables: time 9e-08/0.02522, allocations: 0 / 0.7813 GB, free: 15.38 MB / 0.6199 GB Notification: Performance of remove unused functions: time 0.0003482/0.02557, allocations: 140 kB / 0.7814 GB, free: 15.24 MB / 0.6199 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 9 (central.C,central.AUC,elim.MExc,periodicDose.TotalCumulativeMass,periodicDose.absorptionLumen.C,periodicDose.absorptionLumen.AUC,periodicDose.variableDose.TotalCumulativeMass,peripheral.C,peripheral.AUC) * Number of discrete variables: 20 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,central.Cmax,central.Cmin,central.rising,periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.rising,periodicDose.pulse.T_start,periodicDose.pulse.count,peripheral.Cmax,peripheral.Cmin,peripheral.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 18 (periodicDose.pulse.count,CYP2C19.status,SLC22A2.status,peripheral.Cmin,$whenCondition6,peripheral.Cmax,$whenCondition5,peripheral.rising,periodicDose.absorptionLumen.Cmin,$whenCondition4,periodicDose.absorptionLumen.Cmax,$whenCondition3,periodicDose.absorptionLumen.rising,central.Cmin,$whenCondition2,central.Cmax,$whenCondition1,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (44): * Single equations (assignments): 37 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003085/0.02588, allocations: 185.6 kB / 0.7816 GB, free: 15.05 MB / 0.6199 GB Notification: Performance of simCode: created initialization part: time 0.0009281/0.02681, allocations: 1.263 MB / 0.7828 GB, free: 13.65 MB / 0.6199 GB Notification: Performance of simCode: created event and clocks part: time 2.765e-06/0.02681, allocations: 0 / 0.7828 GB, free: 13.65 MB / 0.6199 GB Notification: Performance of simCode: created simulation system equations: time 0.0004509/0.02726, allocations: 0.7249 MB / 0.7835 GB, free: 12.84 MB / 0.6199 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004696/0.02773, allocations: 145.9 kB / 0.7837 GB, free: 12.7 MB / 0.6199 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001647/0.02938, allocations: 1.487 MB / 0.7851 GB, free: 11.16 MB / 0.6199 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001678/0.02955, allocations: 249.2 kB / 0.7854 GB, free: 10.9 MB / 0.6199 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 7.974e-05/0.02963, allocations: 44.48 kB / 0.7854 GB, free: 10.86 MB / 0.6199 GB Notification: Performance of SimCode: time 9.52e-07/0.02963, allocations: 0 / 0.7854 GB, free: 10.86 MB / 0.6199 GB Notification: Performance of Templates: time 0.007493/0.03712, allocations: 6.743 MB / 0.792 GB, free: 4.277 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp52); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 4.965017044916749]