Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001422/0.001422, allocations: 84.53 kB / 19.93 MB, free: 4.609 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001432/0.001432, allocations: 173.9 kB / 23.21 MB, free: 1.328 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9543/0.9543, allocations: 177.1 MB / 203.5 MB, free: 5.754 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.608/1.608, allocations: 273.5 MB / 0.5209 GB, free: 15.05 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.363e-06/1.363e-06, allocations: 0 / 0.7558 GB, free: 10.76 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.809e-05/1.946e-05, allocations: 6.219 kB / 0.7558 GB, free: 10.75 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium): time 0.002781/0.002801, allocations: 2.731 MB / 0.7585 GB, free: 8.043 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.0012/0.004001, allocations: 1.024 MB / 0.7595 GB, free: 7.023 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001046/0.004105, allocations: 4 kB / 0.7595 GB, free: 7.02 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0003672/0.004473, allocations: 131.2 kB / 0.7596 GB, free: 6.895 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0001505/0.004623, allocations: 120.6 kB / 0.7597 GB, free: 6.801 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0003829/0.005006, allocations: 179.4 kB / 0.7599 GB, free: 6.625 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.0003144/0.00532, allocations: 418 kB / 0.7603 GB, free: 6.215 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0001434/0.005464, allocations: 67.83 kB / 0.7603 GB, free: 6.152 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001797/0.005644, allocations: 211.6 kB / 0.7606 GB, free: 5.945 MB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0001585/0.005802, allocations: 131.5 kB / 0.7607 GB, free: 5.816 MB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 4.207e-05/0.005844, allocations: 32 kB / 0.7607 GB, free: 5.785 MB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 0.00018/0.006024, allocations: 175.3 kB / 0.7609 GB, free: 5.613 MB / 0.5887 GB Notification: Performance of NFScalarize.scalarize: time 8.28e-05/0.006107, allocations: 79.62 kB / 0.7609 GB, free: 5.535 MB / 0.5887 GB Notification: Performance of NFVerifyModel.verify: time 0.0001049/0.006212, allocations: 119.7 kB / 0.7611 GB, free: 5.418 MB / 0.5887 GB Notification: Performance of NFConvertDAE.convert: time 0.0004473/0.006659, allocations: 0.5296 MB / 0.7616 GB, free: 4.887 MB / 0.5887 GB Notification: Performance of FrontEnd - DAE generated: time 2.285e-06/0.006661, allocations: 4 kB / 0.7616 GB, free: 4.883 MB / 0.5887 GB Notification: Performance of FrontEnd: time 1.022e-06/0.006662, allocations: 0 / 0.7616 GB, free: 4.883 MB / 0.5887 GB Notification: Performance of Transformations before backend: time 5.35e-06/0.006668, allocations: 0 / 0.7616 GB, free: 4.883 MB / 0.5887 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 58 * Number of variables: 58 Notification: Performance of Generate backend data structure: time 0.0007857/0.007453, allocations: 0.7087 MB / 0.7623 GB, free: 4.113 MB / 0.5887 GB Notification: Performance of prepare preOptimizeDAE: time 3.512e-05/0.007489, allocations: 12.03 kB / 0.7623 GB, free: 4.102 MB / 0.5887 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001602/0.007649, allocations: 64.64 kB / 0.7624 GB, free: 4.039 MB / 0.5887 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002399/0.007889, allocations: 241.7 kB / 0.7626 GB, free: 3.777 MB / 0.5887 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.869e-05/0.007907, allocations: 20.88 kB / 0.7626 GB, free: 3.758 MB / 0.5887 GB Notification: Performance of preOpt expandDerOperator (simulation): time 4.084e-05/0.007948, allocations: 28.38 kB / 0.7626 GB, free: 3.73 MB / 0.5887 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004301/0.008378, allocations: 467.3 kB / 0.7631 GB, free: 3.246 MB / 0.5887 GB Notification: Performance of preOpt findStateOrder (simulation): time 1.682e-05/0.008395, allocations: 7.891 kB / 0.7631 GB, free: 3.238 MB / 0.5887 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.139e-05/0.008417, allocations: 19.88 kB / 0.7631 GB, free: 3.219 MB / 0.5887 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.424e-06/0.008424, allocations: 4 kB / 0.7631 GB, free: 3.215 MB / 0.5887 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003929/0.008817, allocations: 428.5 kB / 0.7635 GB, free: 2.773 MB / 0.5887 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006928/0.00951, allocations: 0.5764 MB / 0.7641 GB, free: 2.164 MB / 0.5887 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0005024/0.01001, allocations: 456.8 kB / 0.7645 GB, free: 1.684 MB / 0.5887 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002409/0.01025, allocations: 331.8 kB / 0.7648 GB, free: 1.332 MB / 0.5887 GB Notification: Performance of preOpt evalFunc (simulation): time 1.946e-05/0.01027, allocations: 4 kB / 0.7648 GB, free: 1.328 MB / 0.5887 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004113/0.01068, allocations: 0.5446 MB / 0.7654 GB, free: 0.7188 MB / 0.5887 GB Notification: Performance of pre-optimization done (n=39): time 1.813e-06/0.01069, allocations: 0 / 0.7654 GB, free: 0.7188 MB / 0.5887 GB Notification: Performance of matching and sorting (n=41): time 0.00189/0.01258, allocations: 2.04 MB / 0.7674 GB, free: 14.52 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.000106/0.01268, allocations: 288.8 kB / 0.7676 GB, free: 14.18 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002225/0.0129, allocations: 300.5 kB / 0.7679 GB, free: 13.88 MB / 0.6043 GB Notification: Performance of collectPreVariables (initialization): time 2.707e-05/0.01293, allocations: 37.7 kB / 0.768 GB, free: 13.84 MB / 0.6043 GB Notification: Performance of collectInitialEqns (initialization): time 9.652e-05/0.01303, allocations: 176.8 kB / 0.7681 GB, free: 13.66 MB / 0.6043 GB Notification: Performance of collectInitialBindings (initialization): time 7.158e-05/0.0131, allocations: 134.8 kB / 0.7683 GB, free: 13.53 MB / 0.6043 GB Notification: Performance of simplifyInitialFunctions (initialization): time 8.241e-05/0.01318, allocations: 77.69 kB / 0.7683 GB, free: 13.45 MB / 0.6043 GB Notification: Performance of setup shared object (initialization): time 9.83e-05/0.01328, allocations: 350.7 kB / 0.7687 GB, free: 13.09 MB / 0.6043 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002916/0.01357, allocations: 386.6 kB / 0.769 GB, free: 12.68 MB / 0.6043 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003296/0.0139, allocations: 495.1 kB / 0.7695 GB, free: 12.13 MB / 0.6043 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001205/0.01511, allocations: 1.518 MB / 0.771 GB, free: 10.47 MB / 0.6043 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.575e-06/0.01511, allocations: 0 / 0.771 GB, free: 10.47 MB / 0.6043 GB Notification: Performance of matching and sorting (n=57) (initialization): time 0.0007685/0.01588, allocations: 0.9431 MB / 0.7719 GB, free: 9.461 MB / 0.6043 GB Notification: Performance of prepare postOptimizeDAE: time 7.051e-05/0.01595, allocations: 144.5 kB / 0.772 GB, free: 9.289 MB / 0.6043 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.504e-06/0.01595, allocations: 4 kB / 0.772 GB, free: 9.285 MB / 0.6043 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.457e-05/0.01597, allocations: 7.984 kB / 0.7721 GB, free: 9.277 MB / 0.6043 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001732/0.01614, allocations: 75.91 kB / 0.7721 GB, free: 9.203 MB / 0.6043 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.658e-06/0.01615, allocations: 7.984 kB / 0.7721 GB, free: 9.195 MB / 0.6043 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001136/0.01627, allocations: 24.27 kB / 0.7722 GB, free: 9.172 MB / 0.6043 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.963e-05/0.01633, allocations: 55.88 kB / 0.7722 GB, free: 9.117 MB / 0.6043 GB Warning: Assuming fixed start value for the following 10 variables: dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.rising:DISCRETE(fixed = true protected = true ) type: Boolean dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 10 * Number of states: 0 () * Number of discrete variables: 23 ($PRE.dose.absorptionLumen.Cmin,dose.absorptionLumen.Cmin,$PRE.dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.central.rising,$PRE.dose.pulse.count,$PRE.dose.pulse.T_start,$PRE.dose.absorptionLumen.rising,CYP2C19.status,SLC22A2.status,central.rising,dose.pulse.count,dose.pulse.T_start,dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (52): * Single equations (assignments): 47 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0002624/0.01659, allocations: 348.4 kB / 0.7725 GB, free: 8.746 MB / 0.6043 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.178e-05/0.01665, allocations: 35.81 kB / 0.7726 GB, free: 8.711 MB / 0.6043 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.714e-05/0.01671, allocations: 43.42 kB / 0.7726 GB, free: 8.672 MB / 0.6043 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.985e-06/0.01671, allocations: 4 kB / 0.7726 GB, free: 8.668 MB / 0.6043 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.691e-06/0.01672, allocations: 0 / 0.7726 GB, free: 8.668 MB / 0.6043 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.601e-06/0.01672, allocations: 3.984 kB / 0.7726 GB, free: 8.664 MB / 0.6043 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001101/0.01782, allocations: 1.223 MB / 0.7738 GB, free: 7.355 MB / 0.6043 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.976e-06/0.01782, allocations: 0 / 0.7738 GB, free: 7.355 MB / 0.6043 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001724/0.018, allocations: 63.89 kB / 0.7739 GB, free: 7.293 MB / 0.6043 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.871e-06/0.018, allocations: 4 kB / 0.7739 GB, free: 7.289 MB / 0.6043 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.21e-05/0.01803, allocations: 12 kB / 0.7739 GB, free: 7.277 MB / 0.6043 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.218e-06/0.01803, allocations: 4 kB / 0.7739 GB, free: 7.273 MB / 0.6043 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.263e-06/0.01803, allocations: 0 / 0.7739 GB, free: 7.273 MB / 0.6043 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001079/0.01911, allocations: 1.4 MB / 0.7753 GB, free: 5.781 MB / 0.6043 GB Notification: Performance of postOpt removeConstants (simulation): time 9.942e-05/0.01921, allocations: 67.72 kB / 0.7753 GB, free: 5.715 MB / 0.6043 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.019e-05/0.01925, allocations: 16 kB / 0.7753 GB, free: 5.699 MB / 0.6043 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001034/0.01935, allocations: 23.98 kB / 0.7754 GB, free: 5.676 MB / 0.6043 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 8.456e-05/0.01944, allocations: 35.94 kB / 0.7754 GB, free: 5.641 MB / 0.6043 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.251e-05/0.01949, allocations: 59.8 kB / 0.7755 GB, free: 5.582 MB / 0.6043 GB Notification: Performance of sorting global known variables: time 0.0001496/0.01964, allocations: 223.1 kB / 0.7757 GB, free: 5.367 MB / 0.6043 GB Notification: Performance of sort global known variables: time 8e-08/0.01964, allocations: 0 / 0.7757 GB, free: 5.367 MB / 0.6043 GB Notification: Performance of remove unused functions: time 0.0002755/0.01991, allocations: 99.94 kB / 0.7758 GB, free: 5.27 MB / 0.6043 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 7 (dose.TotalCumulativeMass,dose.absorptionLumen.C,dose.absorptionLumen.AUC,dose.variableDose.TotalCumulativeMass,central.C,central.AUC,elim.MExc) * Number of discrete variables: 15 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmin,dose.absorptionLumen.rising,dose.pulse.T_start,dose.pulse.count,central.Cmax,central.Cmin,central.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 13 (dose.pulse.count,SLC22A2.status,CYP2C19.status,dose.absorptionLumen.Cmin,$whenCondition5,dose.absorptionLumen.Cmax,$whenCondition4,dose.absorptionLumen.rising,central.Cmin,$whenCondition3,central.Cmax,$whenCondition2,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (33): * Single equations (assignments): 27 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.00025/0.02016, allocations: 180.1 kB / 0.7759 GB, free: 5.094 MB / 0.6043 GB Notification: Performance of simCode: created initialization part: time 0.0007571/0.02092, allocations: 1.039 MB / 0.777 GB, free: 3.938 MB / 0.6043 GB Notification: Performance of simCode: created event and clocks part: time 1.593e-06/0.02092, allocations: 0 / 0.777 GB, free: 3.938 MB / 0.6043 GB Notification: Performance of simCode: created simulation system equations: time 0.0003652/0.02129, allocations: 0.5991 MB / 0.7775 GB, free: 3.266 MB / 0.6043 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000349/0.02164, allocations: 88.53 kB / 0.7776 GB, free: 3.18 MB / 0.6043 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001202/0.02284, allocations: 1.188 MB / 0.7788 GB, free: 1.945 MB / 0.6043 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001342/0.02297, allocations: 208.2 kB / 0.779 GB, free: 1.723 MB / 0.6043 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 5.712e-05/0.02303, allocations: 28.5 kB / 0.779 GB, free: 1.695 MB / 0.6043 GB Notification: Performance of SimCode: time 6.31e-07/0.02303, allocations: 0 / 0.779 GB, free: 1.695 MB / 0.6043 GB Notification: Performance of Templates: time 0.005277/0.02831, allocations: 5.113 MB / 0.784 GB, free: 12.71 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.045233834069222]