Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001268/0.001268, allocations: 84.44 kB / 19.93 MB, free: 4.617 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001511/0.001511, allocations: 173.9 kB / 23.21 MB, free: 1.332 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.01/1.01, allocations: 177.1 MB / 203.5 MB, free: 5.758 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.592/1.592, allocations: 273.5 MB / 0.5209 GB, free: 14.98 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.034e-06/2.034e-06, allocations: 0 / 0.7558 GB, free: 10.7 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.131e-05/2.334e-05, allocations: 2.281 kB / 0.7558 GB, free: 10.7 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005404/0.005428, allocations: 6.051 MB / 0.7617 GB, free: 4.691 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.002169/0.007597, allocations: 1.978 MB / 0.7636 GB, free: 2.711 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002761/0.007873, allocations: 19.94 kB / 0.7636 GB, free: 2.691 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0005596/0.008432, allocations: 281.7 kB / 0.7639 GB, free: 2.414 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0004916/0.008924, allocations: 472 kB / 0.7644 GB, free: 1.949 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.001024/0.009948, allocations: 0.5381 MB / 0.7649 GB, free: 1.41 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.001074/0.01102, allocations: 1.801 MB / 0.7666 GB, free: 15.6 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003303/0.01135, allocations: 259.7 kB / 0.7669 GB, free: 15.34 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0006399/0.01199, allocations: 0.9083 MB / 0.7678 GB, free: 14.43 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004465/0.01244, allocations: 0.5296 MB / 0.7683 GB, free: 13.9 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0001463/0.01259, allocations: 168 kB / 0.7685 GB, free: 13.73 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003129/0.0129, allocations: 311.3 kB / 0.7687 GB, free: 13.43 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0002155/0.01311, allocations: 366.7 kB / 0.7691 GB, free: 13.07 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0003682/0.01348, allocations: 0.5261 MB / 0.7696 GB, free: 12.54 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.001388/0.01487, allocations: 2.197 MB / 0.7718 GB, free: 10.34 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 2.785e-06/0.01487, allocations: 4 kB / 0.7718 GB, free: 10.34 MB / 0.6043 GB Notification: Performance of FrontEnd: time 1.984e-06/0.01487, allocations: 0 / 0.7718 GB, free: 10.34 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 1.782e-05/0.01489, allocations: 0 / 0.7718 GB, free: 10.34 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.002515/0.01741, allocations: 2.213 MB / 0.7739 GB, free: 7.961 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 4.516e-05/0.01745, allocations: 8.031 kB / 0.7739 GB, free: 7.953 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004948/0.01795, allocations: 243.8 kB / 0.7742 GB, free: 7.715 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007434/0.01869, allocations: 0.7087 MB / 0.7749 GB, free: 6.965 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.553e-05/0.01874, allocations: 78.38 kB / 0.7749 GB, free: 6.891 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001299/0.01887, allocations: 112.3 kB / 0.775 GB, free: 6.781 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001749/0.02062, allocations: 1.979 MB / 0.777 GB, free: 4.68 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.006e-05/0.02066, allocations: 15.88 kB / 0.777 GB, free: 4.664 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.18e-05/0.02072, allocations: 40 kB / 0.777 GB, free: 4.625 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.5e-05/0.02073, allocations: 23.94 kB / 0.777 GB, free: 4.602 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001602/0.02233, allocations: 1.807 MB / 0.7788 GB, free: 2.699 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002617/0.02495, allocations: 2.461 MB / 0.7812 GB, free: 196 kB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001915/0.02687, allocations: 1.926 MB / 0.7831 GB, free: 14.12 MB / 0.6199 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001068/0.02793, allocations: 1.419 MB / 0.7845 GB, free: 12.59 MB / 0.6199 GB Notification: Performance of preOpt evalFunc (simulation): time 4.809e-05/0.02798, allocations: 16 kB / 0.7845 GB, free: 12.57 MB / 0.6199 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001593/0.02958, allocations: 2.287 MB / 0.7867 GB, free: 10.06 MB / 0.6199 GB Notification: Performance of pre-optimization done (n=157): time 2.495e-06/0.02958, allocations: 0 / 0.7867 GB, free: 10.06 MB / 0.6199 GB Notification: Performance of matching and sorting (n=165): time 0.007869/0.03745, allocations: 9.299 MB / 0.7958 GB, free: 156 kB / 0.6199 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003824/0.03783, allocations: 1.028 MB / 0.7968 GB, free: 14.89 MB / 0.6355 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000855/0.03868, allocations: 0.9662 MB / 0.7978 GB, free: 13.9 MB / 0.6355 GB Notification: Performance of collectPreVariables (initialization): time 7.853e-05/0.03876, allocations: 77.69 kB / 0.7978 GB, free: 13.82 MB / 0.6355 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002689/0.03903, allocations: 498.5 kB / 0.7983 GB, free: 13.33 MB / 0.6355 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003059/0.03934, allocations: 0.5269 MB / 0.7988 GB, free: 12.8 MB / 0.6355 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002863/0.03962, allocations: 283.5 kB / 0.7991 GB, free: 12.52 MB / 0.6355 GB Notification: Performance of setup shared object (initialization): time 7.279e-05/0.0397, allocations: 305.1 kB / 0.7994 GB, free: 12.21 MB / 0.6355 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001388/0.04108, allocations: 1.626 MB / 0.801 GB, free: 10.46 MB / 0.6355 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001378/0.04246, allocations: 2.012 MB / 0.8029 GB, free: 8.16 MB / 0.6355 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004943/0.04741, allocations: 6.598 MB / 0.8094 GB, free: 0.9727 MB / 0.6355 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.111e-06/0.04741, allocations: 4 kB / 0.8094 GB, free: 0.9688 MB / 0.6355 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.003208/0.05062, allocations: 3.909 MB / 0.8132 GB, free: 12.8 MB / 0.6512 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002236/0.05084, allocations: 0.5683 MB / 0.8138 GB, free: 12.11 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.531e-05/0.05086, allocations: 8 kB / 0.8138 GB, free: 12.11 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.872e-05/0.05089, allocations: 16 kB / 0.8138 GB, free: 12.09 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005839/0.05147, allocations: 315.8 kB / 0.8141 GB, free: 11.78 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.909e-05/0.05149, allocations: 31.92 kB / 0.8141 GB, free: 11.75 MB / 0.6512 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004197/0.05191, allocations: 95.88 kB / 0.8142 GB, free: 11.66 MB / 0.6512 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001972/0.05211, allocations: 244.3 kB / 0.8144 GB, free: 11.42 MB / 0.6512 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008275/0.05293, allocations: 1.087 MB / 0.8155 GB, free: 10.24 MB / 0.6512 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002293/0.05316, allocations: 167 kB / 0.8157 GB, free: 10.07 MB / 0.6512 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001565/0.05332, allocations: 141.6 kB / 0.8158 GB, free: 9.934 MB / 0.6512 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.896e-06/0.05333, allocations: 16 kB / 0.8158 GB, free: 9.918 MB / 0.6512 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.933e-05/0.05335, allocations: 0 / 0.8158 GB, free: 9.918 MB / 0.6512 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.408e-06/0.05336, allocations: 7.969 kB / 0.8158 GB, free: 9.91 MB / 0.6512 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004309/0.05767, allocations: 5.063 MB / 0.8208 GB, free: 4.605 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.197e-06/0.05767, allocations: 0 / 0.8208 GB, free: 4.605 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005769/0.05825, allocations: 235.7 kB / 0.821 GB, free: 4.375 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.514e-06/0.05826, allocations: 4 kB / 0.821 GB, free: 4.371 MB / 0.6512 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.281e-05/0.05834, allocations: 63.97 kB / 0.821 GB, free: 4.309 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.835e-06/0.05835, allocations: 11.94 kB / 0.8211 GB, free: 4.297 MB / 0.6512 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.104e-06/0.05835, allocations: 0 / 0.8211 GB, free: 4.297 MB / 0.6512 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004601/0.06295, allocations: 5.847 MB / 0.8268 GB, free: 14.13 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0004605/0.06341, allocations: 326.9 kB / 0.8271 GB, free: 13.81 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001498/0.06356, allocations: 64 kB / 0.8271 GB, free: 13.75 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005436/0.0641, allocations: 71.94 kB / 0.8272 GB, free: 13.68 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002884/0.06439, allocations: 159.6 kB / 0.8274 GB, free: 13.52 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001776/0.06457, allocations: 246.6 kB / 0.8276 GB, free: 13.29 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.0005532/0.06512, allocations: 0.6767 MB / 0.8283 GB, free: 12.6 MB / 0.6668 GB Notification: Performance of sort global known variables: time 9e-08/0.06512, allocations: 0 / 0.8283 GB, free: 12.6 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.0007739/0.0659, allocations: 372 kB / 0.8286 GB, free: 12.23 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004069/0.0663, allocations: 298.8 kB / 0.8289 GB, free: 11.95 MB / 0.6668 GB Notification: Performance of simCode: created initialization part: time 0.003374/0.06968, allocations: 4.488 MB / 0.8333 GB, free: 6.996 MB / 0.6668 GB Notification: Performance of simCode: created event and clocks part: time 4.699e-06/0.06968, allocations: 4 kB / 0.8333 GB, free: 6.992 MB / 0.6668 GB Notification: Performance of simCode: created simulation system equations: time 0.001635/0.07132, allocations: 2.552 MB / 0.8358 GB, free: 4.145 MB / 0.6668 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00109/0.07241, allocations: 359.8 kB / 0.8361 GB, free: 3.812 MB / 0.6668 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004885/0.07729, allocations: 4.633 MB / 0.8406 GB, free: 15.08 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005144/0.07781, allocations: 0.6527 MB / 0.8413 GB, free: 14.39 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001988/0.07801, allocations: 92.48 kB / 0.8414 GB, free: 14.3 MB / 0.6824 GB Notification: Performance of SimCode: time 9.42e-07/0.07801, allocations: 0 / 0.8414 GB, free: 14.3 MB / 0.6824 GB Notification: Performance of Templates: time 0.3366/0.4146, allocations: 20.22 MB / 0.8611 GB, free: 105.3 MB / 0.6824 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:308:116: error: use of undeclared identifier 'patient4_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient4_P_SLC22A2_P_g_P_ph_P_intermediate_'? 308 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient4_P_CYP2C19_P_g_P_ph_P_poor_, patient4_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient4_P_CYP2C19_P_g_P_ph_P_rapid_, patient4_P_CYP2C19_P_g_P_ph_P_ultra_, _patient4_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient4_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:531:36: note: '_patient4_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 531 | StatArrayDim1 _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:308:200: error: use of undeclared identifier 'patient4_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient4_P_CYP2C19_P_g_P_ph_P_poor_'? 308 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient4_P_CYP2C19_P_g_P_ph_P_poor_, patient4_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient4_P_CYP2C19_P_g_P_ph_P_rapid_, patient4_P_CYP2C19_P_g_P_ph_P_ultra_, _patient4_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient4_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient4_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:526:36: note: '_patient4_P_CYP2C19_P_g_P_ph_P_poor_' declared here 526 | StatArrayDim1 _patient4_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:312:116: error: use of undeclared identifier 'patient4_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient4_P_SLC22A2_P_g_P_ph_P_intermediate_'? 312 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient4_P_CYP2C19_P_g_P_ph_P_poor_, patient4_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient4_P_CYP2C19_P_g_P_ph_P_rapid_, patient4_P_CYP2C19_P_g_P_ph_P_ultra_, _patient4_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient4_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:531:36: note: '_patient4_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 531 | StatArrayDim1 _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:312:200: error: use of undeclared identifier 'patient4_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient4_P_CYP2C19_P_g_P_ph_P_poor_'? 312 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient4_P_CYP2C19_P_g_P_ph_P_poor_, patient4_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient4_P_CYP2C19_P_g_P_ph_P_rapid_, patient4_P_CYP2C19_P_g_P_ph_P_ultra_, _patient4_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient4_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient4_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:526:36: note: '_patient4_P_CYP2C19_P_g_P_ph_P_poor_' declared here 526 | StatArrayDim1 _patient4_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:346:75: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_poor_' 346 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:346:158: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_rapid_' 346 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:346:196: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_ultra_' 346 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:350:75: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_poor_' 350 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:350:158: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_rapid_' 350 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:350:196: error: use of undeclared identifier 'patient4_P_SLC22A2_P_g_P_ph_P_ultra_' 350 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient4_P_SLC22A2_P_g_P_ph_P_poor_, _patient4_P_SLC22A2_P_g_P_ph_P_intermediate_, patient4_P_SLC22A2_P_g_P_ph_P_rapid_, patient4_P_SLC22A2_P_g_P_ph_P_ultra_, _patient4_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient4_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:751:136: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_'? 751 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:540:36: note: '_patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 540 | StatArrayDim1 _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:751:260: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_'? 751 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:535:36: note: '_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_' declared here 535 | StatArrayDim1 _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:755:136: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_'? 755 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:540:36: note: '_patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 540 | StatArrayDim1 _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:755:260: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_'? 755 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.h:535:36: note: '_patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_' declared here 535 | StatArrayDim1 _patient_citalopram_CYP2C19_2_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:789:75: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_' 789 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:789:198: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_' 789 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:789:256: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_' 789 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:793:75: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_' 793 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp17); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentInitialize.cpp:793:198: error: use of undeclared identifier 'patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_' 793 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_poor_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_rapid_, patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_citalopram_CYP2C19_2_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp17); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_ExperimentCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.345630391035229]