Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001148/0.001148, allocations: 76.45 kB / 19.93 MB, free: 4.633 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001574/0.001574, allocations: 177.2 kB / 23.21 MB, free: 1.348 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.017/1.017, allocations: 177.1 MB / 203.5 MB, free: 5.785 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.788/1.788, allocations: 273.5 MB / 0.5209 GB, free: 15.09 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 4.539e-06/4.539e-06, allocations: 0 / 0.7558 GB, free: 10.79 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.689e-05/4.143e-05, allocations: 2.281 kB / 0.7558 GB, free: 10.79 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic): time 0.01098/0.01103, allocations: 13.54 MB / 0.769 GB, free: 13.27 MB / 0.6043 GB Notification: Performance of NFInst.instExpressions: time 0.007227/0.01825, allocations: 3.415 MB / 0.7723 GB, free: 9.852 MB / 0.6043 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.002544/0.0208, allocations: 28 kB / 0.7723 GB, free: 9.824 MB / 0.6043 GB Notification: Performance of NFTyping.typeComponents: time 0.00217/0.02297, allocations: 0.5033 MB / 0.7728 GB, free: 9.316 MB / 0.6043 GB Notification: Performance of NFTyping.typeBindings: time 0.003853/0.02682, allocations: 1.088 MB / 0.7739 GB, free: 8.219 MB / 0.6043 GB Notification: Performance of NFTyping.typeClassSections: time 0.002507/0.02933, allocations: 0.9244 MB / 0.7748 GB, free: 7.293 MB / 0.6043 GB Notification: Performance of NFFlatten.flatten: time 0.00517/0.0345, allocations: 3.888 MB / 0.7786 GB, free: 3.387 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.001033/0.03553, allocations: 0.5327 MB / 0.7791 GB, free: 2.824 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003109/0.03864, allocations: 1.957 MB / 0.781 GB, free: 0.8633 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001195/0.03983, allocations: 1.125 MB / 0.7821 GB, free: 15.73 MB / 0.6199 GB Notification: Performance of NFPackage.collectConstants: time 0.000303/0.04014, allocations: 332 kB / 0.7824 GB, free: 15.41 MB / 0.6199 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0006446/0.04078, allocations: 483.2 kB / 0.7829 GB, free: 14.94 MB / 0.6199 GB Notification: Performance of NFScalarize.scalarize: time 0.0004092/0.04119, allocations: 0.7159 MB / 0.7836 GB, free: 14.22 MB / 0.6199 GB Notification: Performance of NFVerifyModel.verify: time 0.0009614/0.04215, allocations: 1.119 MB / 0.7847 GB, free: 13.1 MB / 0.6199 GB Notification: Performance of NFConvertDAE.convert: time 0.004016/0.04617, allocations: 4.226 MB / 0.7888 GB, free: 8.859 MB / 0.6199 GB Notification: Performance of FrontEnd - DAE generated: time 6.823e-06/0.04617, allocations: 0 / 0.7888 GB, free: 8.859 MB / 0.6199 GB Notification: Performance of FrontEnd: time 1.573e-06/0.04617, allocations: 0 / 0.7888 GB, free: 8.859 MB / 0.6199 GB Notification: Performance of Transformations before backend: time 0.0001069/0.04628, allocations: 0 / 0.7888 GB, free: 8.859 MB / 0.6199 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 486 * Number of variables: 486 Notification: Performance of Generate backend data structure: time 0.004824/0.05111, allocations: 4.226 MB / 0.793 GB, free: 4.355 MB / 0.6199 GB Notification: Performance of prepare preOptimizeDAE: time 5.457e-05/0.05116, allocations: 8.75 kB / 0.793 GB, free: 4.348 MB / 0.6199 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000885/0.05205, allocations: 462.7 kB / 0.7934 GB, free: 3.895 MB / 0.6199 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.00188/0.05393, allocations: 1.351 MB / 0.7947 GB, free: 2.488 MB / 0.6199 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.135e-05/0.05401, allocations: 144 kB / 0.7949 GB, free: 2.348 MB / 0.6199 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002511/0.05426, allocations: 224.2 kB / 0.7951 GB, free: 2.129 MB / 0.6199 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003546/0.0578, allocations: 3.661 MB / 0.7987 GB, free: 14.23 MB / 0.6355 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.927e-05/0.05787, allocations: 27.83 kB / 0.7987 GB, free: 14.21 MB / 0.6355 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000123/0.058, allocations: 83.98 kB / 0.7988 GB, free: 14.12 MB / 0.6355 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.882e-05/0.05802, allocations: 44 kB / 0.7988 GB, free: 14.08 MB / 0.6355 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003526/0.06155, allocations: 3.297 MB / 0.802 GB, free: 10.6 MB / 0.6355 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008224/0.06977, allocations: 5.858 MB / 0.8077 GB, free: 4.625 MB / 0.6355 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003429/0.0732, allocations: 3.269 MB / 0.8109 GB, free: 1.129 MB / 0.6355 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002105/0.07531, allocations: 2.45 MB / 0.8133 GB, free: 14.48 MB / 0.6512 GB Notification: Performance of preOpt evalFunc (simulation): time 8.274e-05/0.07539, allocations: 24 kB / 0.8133 GB, free: 14.46 MB / 0.6512 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003368/0.07876, allocations: 4.216 MB / 0.8175 GB, free: 9.789 MB / 0.6512 GB Notification: Performance of pre-optimization done (n=300): time 6.272e-06/0.07877, allocations: 0 / 0.8175 GB, free: 9.789 MB / 0.6512 GB Notification: Performance of matching and sorting (n=318): time 0.01718/0.09595, allocations: 17.07 MB / 0.8341 GB, free: 7.656 MB / 0.6668 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.001013/0.09696, allocations: 1.98 MB / 0.8361 GB, free: 5.23 MB / 0.6668 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00231/0.09927, allocations: 1.98 MB / 0.838 GB, free: 3.219 MB / 0.6668 GB Notification: Performance of collectPreVariables (initialization): time 0.0005953/0.09987, allocations: 121.7 kB / 0.8381 GB, free: 3.094 MB / 0.6668 GB Notification: Performance of collectInitialEqns (initialization): time 0.0007215/0.1006, allocations: 1.045 MB / 0.8391 GB, free: 2.039 MB / 0.6668 GB Notification: Performance of collectInitialBindings (initialization): time 0.0008404/0.1014, allocations: 1.007 MB / 0.8401 GB, free: 1.023 MB / 0.6668 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006106/0.102, allocations: 0.5351 MB / 0.8406 GB, free: 492 kB / 0.6668 GB Notification: Performance of setup shared object (initialization): time 8.021e-05/0.1021, allocations: 301.1 kB / 0.8409 GB, free: 188 kB / 0.6668 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002728/0.1048, allocations: 2.817 MB / 0.8437 GB, free: 13.14 MB / 0.6824 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002788/0.1076, allocations: 3.619 MB / 0.8472 GB, free: 8.953 MB / 0.6824 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.4124/0.52, allocations: 11.55 MB / 0.8585 GB, free: 100.9 MB / 0.6824 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.498e-05/0.5201, allocations: 7.469 kB / 0.8585 GB, free: 100.9 MB / 0.6824 GB Notification: Performance of matching and sorting (n=462) (initialization): time 0.008268/0.5283, allocations: 7.023 MB / 0.8654 GB, free: 97.54 MB / 0.6824 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002746/0.5286, allocations: 1.012 MB / 0.8663 GB, free: 96.39 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.323e-05/0.5287, allocations: 22.91 kB / 0.8664 GB, free: 96.39 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (initialization): time 6.042e-05/0.5287, allocations: 43.88 kB / 0.8664 GB, free: 96.39 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00121/0.5299, allocations: 0.637 MB / 0.867 GB, free: 96.32 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.82e-05/0.53, allocations: 50.95 kB / 0.8671 GB, free: 96.31 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001551/0.5315, allocations: 159.6 kB / 0.8672 GB, free: 96.26 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003292/0.5318, allocations: 411.8 kB / 0.8676 GB, free: 96.22 MB / 0.6824 GB Warning: Assuming fixed start value for the following 84 variables: patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 186 ($PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (426): * Single equations (assignments): 390 * Array equations: 0 * Algorithm blocks: 36 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001977/0.5338, allocations: 1.971 MB / 0.8695 GB, free: 94.69 MB / 0.6824 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0006478/0.5345, allocations: 333.1 kB / 0.8699 GB, free: 94.69 MB / 0.6824 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003812/0.5348, allocations: 274.3 kB / 0.8701 GB, free: 94.52 MB / 0.6824 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.616e-05/0.5349, allocations: 25.97 kB / 0.8702 GB, free: 94.52 MB / 0.6824 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.957e-05/0.5349, allocations: 8.484 kB / 0.8702 GB, free: 94.51 MB / 0.6824 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.571e-05/0.5349, allocations: 12.05 kB / 0.8702 GB, free: 94.51 MB / 0.6824 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.01057/0.5455, allocations: 9.08 MB / 0.879 GB, free: 89.35 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.291e-05/0.5455, allocations: 5 kB / 0.879 GB, free: 89.35 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001344/0.5468, allocations: 466.2 kB / 0.8795 GB, free: 89.31 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (simulation): time 3.414e-05/0.5469, allocations: 13.97 kB / 0.8795 GB, free: 89.3 MB / 0.6824 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002556/0.5471, allocations: 119.2 kB / 0.8796 GB, free: 89.26 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.689e-05/0.5472, allocations: 9.281 kB / 0.8796 GB, free: 89.26 MB / 0.6824 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.797e-06/0.5472, allocations: 2.797 kB / 0.8796 GB, free: 89.26 MB / 0.6824 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.01196/0.5591, allocations: 10.21 MB / 0.8896 GB, free: 83.21 MB / 0.6824 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001671/0.5608, allocations: 0.6045 MB / 0.8902 GB, free: 83.01 MB / 0.6824 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0006019/0.5614, allocations: 134.2 kB / 0.8903 GB, free: 82.94 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009923/0.5624, allocations: 123.2 kB / 0.8904 GB, free: 82.91 MB / 0.6824 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0006325/0.563, allocations: 281.9 kB / 0.8907 GB, free: 82.84 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0006019/0.5636, allocations: 375.2 kB / 0.8911 GB, free: 82.8 MB / 0.6824 GB Notification: Performance of sorting global known variables: time 0.002116/0.5657, allocations: 1.338 MB / 0.8924 GB, free: 82.26 MB / 0.6824 GB Notification: Performance of sort global known variables: time 1.9e-07/0.5657, allocations: 0 / 0.8924 GB, free: 82.26 MB / 0.6824 GB Notification: Performance of remove unused functions: time 0.00349/0.5692, allocations: 0.763 MB / 0.8931 GB, free: 82.18 MB / 0.6824 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 54 (patient_high.central.C,patient_high.central.AUC,patient_high.elim.MExc,patient_high.periodicDose.TotalCumulativeMass,patient_high.periodicDose.absorptionLumen.C,patient_high.periodicDose.absorptionLumen.AUC,patient_high.periodicDose.variableDose.TotalCumulativeMass,patient_high.peripheral.C,patient_high.peripheral.AUC,patient_low.central.C,patient_low.central.AUC,patient_low.elim.MExc,patient_low.periodicDose.TotalCumulativeMass,patient_low.periodicDose.absorptionLumen.C,patient_low.periodicDose.absorptionLumen.AUC,patient_low.periodicDose.variableDose.TotalCumulativeMass,patient_low.peripheral.C,patient_low.peripheral.AUC,patient.central.C,patient.central.AUC,patient.elim.MExc,patient.periodicDose.TotalCumulativeMass,patient.periodicDose.absorptionLumen.C,patient.periodicDose.absorptionLumen.AUC,patient.periodicDose.variableDose.TotalCumulativeMass,patient.peripheral.C,patient.peripheral.AUC,ref_high.central.C,ref_high.central.AUC,ref_high.elim.MExc,ref_high.periodicDose.TotalCumulativeMass,ref_high.periodicDose.absorptionLumen.C,ref_high.periodicDose.absorptionLumen.AUC,ref_high.periodicDose.variableDose.TotalCumulativeMass,ref_high.peripheral.C,ref_high.peripheral.AUC,ref_low.central.C,ref_low.central.AUC,ref_low.elim.MExc,ref_low.periodicDose.TotalCumulativeMass,ref_low.periodicDose.absorptionLumen.C,ref_low.periodicDose.absorptionLumen.AUC,ref_low.periodicDose.variableDose.TotalCumulativeMass,ref_low.peripheral.C,ref_low.peripheral.AUC,ref.central.C,ref.central.AUC,ref.elim.MExc,ref.periodicDose.TotalCumulativeMass,ref.periodicDose.absorptionLumen.C,ref.periodicDose.absorptionLumen.AUC,ref.periodicDose.variableDose.TotalCumulativeMass,ref.peripheral.C,ref.peripheral.AUC) * Number of discrete variables: 120 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,patient_high.central.Cmax,patient_high.central.Cmin,patient_high.central.rising,patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.rising,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmax,patient_high.peripheral.Cmin,patient_high.peripheral.rising,patient_high.SLC22A2.status,patient_high.CYP2C19.status,$whenCondition14,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13,patient_low.central.Cmax,patient_low.central.Cmin,patient_low.central.rising,patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.rising,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmax,patient_low.peripheral.Cmin,patient_low.peripheral.rising,patient_low.SLC22A2.status,patient_low.CYP2C19.status,$whenCondition21,$whenCondition15,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient.central.Cmax,patient.central.Cmin,patient.central.rising,patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.rising,patient.periodicDose.pulse.T_start,patient.periodicDose.pulse.count,patient.peripheral.Cmax,patient.peripheral.Cmin,patient.peripheral.rising,patient.SLC22A2.status,patient.CYP2C19.status,$whenCondition28,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,$whenCondition26,$whenCondition27,ref_high.central.Cmax,ref_high.central.Cmin,ref_high.central.rising,ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.rising,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmax,ref_high.peripheral.Cmin,ref_high.peripheral.rising,ref_high.SLC22A2.status,ref_high.CYP2C19.status,$whenCondition35,$whenCondition29,$whenCondition30,$whenCondition31,$whenCondition32,$whenCondition33,$whenCondition34,ref_low.central.Cmax,ref_low.central.Cmin,ref_low.central.rising,ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.rising,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmax,ref_low.peripheral.Cmin,ref_low.peripheral.rising,ref_low.SLC22A2.status,ref_low.CYP2C19.status,$whenCondition42,$whenCondition36,$whenCondition37,$whenCondition38,$whenCondition39,$whenCondition40,$whenCondition41,ref.central.Cmax,ref.central.Cmin,ref.central.rising,ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.rising,ref.periodicDose.pulse.T_start,ref.periodicDose.pulse.count,ref.peripheral.Cmax,ref.peripheral.Cmin,ref.peripheral.rising,ref.SLC22A2.status,ref.CYP2C19.status) * Number of discrete states: 108 (ref.periodicDose.pulse.count,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.Cmin,$whenCondition41,ref.peripheral.Cmax,$whenCondition40,ref.peripheral.rising,ref.periodicDose.absorptionLumen.Cmin,$whenCondition39,ref.periodicDose.absorptionLumen.Cmax,$whenCondition38,ref.periodicDose.absorptionLumen.rising,ref.central.Cmin,$whenCondition37,ref.central.Cmax,$whenCondition36,ref.central.rising,ref_low.periodicDose.pulse.count,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.Cmin,$whenCondition34,ref_low.peripheral.Cmax,$whenCondition33,ref_low.peripheral.rising,ref_low.periodicDose.absorptionLumen.Cmin,$whenCondition32,ref_low.periodicDose.absorptionLumen.Cmax,$whenCondition31,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.Cmin,$whenCondition30,ref_low.central.Cmax,$whenCondition29,ref_low.central.rising,ref_high.periodicDose.pulse.count,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.Cmin,$whenCondition27,ref_high.peripheral.Cmax,$whenCondition26,ref_high.peripheral.rising,ref_high.periodicDose.absorptionLumen.Cmin,$whenCondition25,ref_high.periodicDose.absorptionLumen.Cmax,$whenCondition24,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.Cmin,$whenCondition23,ref_high.central.Cmax,$whenCondition22,ref_high.central.rising,patient.periodicDose.pulse.count,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.Cmin,$whenCondition20,patient.peripheral.Cmax,$whenCondition19,patient.peripheral.rising,patient.periodicDose.absorptionLumen.Cmin,$whenCondition18,patient.periodicDose.absorptionLumen.Cmax,$whenCondition17,patient.periodicDose.absorptionLumen.rising,patient.central.Cmin,$whenCondition16,patient.central.Cmax,$whenCondition15,patient.central.rising,patient_low.periodicDose.pulse.count,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.Cmin,$whenCondition13,patient_low.peripheral.Cmax,$whenCondition12,patient_low.peripheral.rising,patient_low.periodicDose.absorptionLumen.Cmin,$whenCondition11,patient_low.periodicDose.absorptionLumen.Cmax,$whenCondition10,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.Cmin,$whenCondition9,patient_low.central.Cmax,$whenCondition8,patient_low.central.rising,patient_high.periodicDose.pulse.count,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.Cmin,$whenCondition6,patient_high.peripheral.Cmax,$whenCondition5,patient_high.peripheral.rising,patient_high.periodicDose.absorptionLumen.Cmin,$whenCondition4,patient_high.periodicDose.absorptionLumen.Cmax,$whenCondition3,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.Cmin,$whenCondition2,patient_high.central.Cmax,$whenCondition1,patient_high.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (252): * Single equations (assignments): 210 * Array equations: 0 * Algorithm blocks: 30 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0008514/0.5701, allocations: 423.3 kB / 0.8935 GB, free: 81.95 MB / 0.6824 GB Notification: Performance of simCode: created initialization part: time 0.007146/0.5772, allocations: 7.942 MB / 0.9013 GB, free: 76.04 MB / 0.6824 GB Notification: Performance of simCode: created event and clocks part: time 6.943e-06/0.5772, allocations: 0 / 0.9013 GB, free: 76.04 MB / 0.6824 GB Notification: Performance of simCode: created simulation system equations: time 0.003271/0.5805, allocations: 4.615 MB / 0.9058 GB, free: 72.35 MB / 0.6824 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.003101/0.5836, allocations: 0.7914 MB / 0.9065 GB, free: 72.09 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009282/0.5929, allocations: 8.754 MB / 0.9151 GB, free: 64.82 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008502/0.5937, allocations: 1.272 MB / 0.9163 GB, free: 63.5 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007657/0.5945, allocations: 184.5 kB / 0.9165 GB, free: 63.32 MB / 0.6824 GB Notification: Performance of SimCode: time 2.464e-06/0.5945, allocations: 0 / 0.9165 GB, free: 63.32 MB / 0.6824 GB Notification: Performance of Templates: time 0.04882/0.6433, allocations: 40.43 MB / 0.956 GB, free: 23.48 MB / 0.6824 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:209: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:973:36: note: '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_' declared here 973 | StatArrayDim1 _patient_low_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1130:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1130 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp17); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.9024930549785495]