Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001075/0.001075, allocations: 84.53 kB / 19.93 MB, free: 4.609 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001009/0.001009, allocations: 177.9 kB / 23.21 MB, free: 1.328 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9717/0.9717, allocations: 177.1 MB / 203.5 MB, free: 5.754 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.568/1.568, allocations: 273.5 MB / 0.5209 GB, free: 14.98 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 3.807e-06/3.807e-06, allocations: 0 / 0.7558 GB, free: 10.71 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.715e-05/4.096e-05, allocations: 6.281 kB / 0.7558 GB, free: 10.7 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.006113/0.006154, allocations: 6.204 MB / 0.7618 GB, free: 4.543 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.002386/0.008539, allocations: 1.297 MB / 0.7631 GB, free: 3.246 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003607/0.0089, allocations: 8 kB / 0.7631 GB, free: 3.238 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0002584/0.009159, allocations: 106.8 kB / 0.7632 GB, free: 3.133 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0005897/0.009748, allocations: 345.1 kB / 0.7635 GB, free: 2.793 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007691/0.01052, allocations: 295.4 kB / 0.7638 GB, free: 2.504 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.0009044/0.01142, allocations: 1.217 MB / 0.765 GB, free: 1.281 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.00029/0.01171, allocations: 171.9 kB / 0.7652 GB, free: 1.098 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005044/0.01222, allocations: 0.6199 MB / 0.7658 GB, free: 488 kB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004307/0.01265, allocations: 347 kB / 0.7661 GB, free: 140 kB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 0.0001021/0.01275, allocations: 111.9 kB / 0.7662 GB, free: 28 kB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001229/0.01287, allocations: 116 kB / 0.7663 GB, free: 15.91 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0001087/0.01298, allocations: 199.2 kB / 0.7665 GB, free: 15.72 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0002787/0.01326, allocations: 359.2 kB / 0.7669 GB, free: 15.37 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.0008312/0.01409, allocations: 1.18 MB / 0.768 GB, free: 14.18 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 5.78e-06/0.0141, allocations: 0 / 0.768 GB, free: 14.18 MB / 0.6043 GB Notification: Performance of FrontEnd: time 2.295e-06/0.0141, allocations: 0 / 0.768 GB, free: 14.18 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 1.414e-05/0.01411, allocations: 0 / 0.768 GB, free: 14.18 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001619/0.01573, allocations: 1.325 MB / 0.7693 GB, free: 12.77 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 4.826e-05/0.01578, allocations: 12.03 kB / 0.7693 GB, free: 12.76 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001295/0.01591, allocations: 95.44 kB / 0.7694 GB, free: 12.67 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005333/0.01644, allocations: 448.8 kB / 0.7698 GB, free: 12.2 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.714e-05/0.01648, allocations: 45.31 kB / 0.7699 GB, free: 12.16 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 9.204e-05/0.01657, allocations: 71.94 kB / 0.7699 GB, free: 12.09 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001178/0.01775, allocations: 0.8514 MB / 0.7708 GB, free: 11.17 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.988e-05/0.01778, allocations: 11.89 kB / 0.7708 GB, free: 11.16 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.133e-05/0.01782, allocations: 24 kB / 0.7708 GB, free: 11.13 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.57e-05/0.01784, allocations: 19.92 kB / 0.7708 GB, free: 11.11 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008752/0.01871, allocations: 0.7504 MB / 0.7716 GB, free: 10.33 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001818/0.02053, allocations: 1.756 MB / 0.7733 GB, free: 8.523 MB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001066/0.0216, allocations: 0.8018 MB / 0.7741 GB, free: 7.66 MB / 0.6043 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004591/0.02205, allocations: 485.3 kB / 0.7745 GB, free: 7.141 MB / 0.6043 GB Notification: Performance of preOpt evalFunc (simulation): time 4.376e-05/0.0221, allocations: 15.94 kB / 0.7745 GB, free: 7.125 MB / 0.6043 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008963/0.02299, allocations: 1.104 MB / 0.7756 GB, free: 5.895 MB / 0.6043 GB Notification: Performance of pre-optimization done (n=99): time 3.276e-06/0.023, allocations: 0 / 0.7756 GB, free: 5.895 MB / 0.6043 GB Notification: Performance of matching and sorting (n=105): time 0.004134/0.02713, allocations: 3.537 MB / 0.7791 GB, free: 2.09 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002137/0.02735, allocations: 0.5952 MB / 0.7797 GB, free: 1.359 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004966/0.02784, allocations: 0.5301 MB / 0.7802 GB, free: 0.8164 MB / 0.6043 GB Notification: Performance of collectPreVariables (initialization): time 5.589e-05/0.0279, allocations: 61.7 kB / 0.7802 GB, free: 0.75 MB / 0.6043 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001815/0.02808, allocations: 313.4 kB / 0.7805 GB, free: 448 kB / 0.6043 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001904/0.02827, allocations: 345.2 kB / 0.7809 GB, free: 100 kB / 0.6043 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001997/0.02847, allocations: 186.6 kB / 0.781 GB, free: 15.91 MB / 0.6199 GB Notification: Performance of setup shared object (initialization): time 0.0001607/0.02863, allocations: 394.7 kB / 0.7814 GB, free: 15.52 MB / 0.6199 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006278/0.02926, allocations: 0.6369 MB / 0.782 GB, free: 14.82 MB / 0.6199 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007839/0.03004, allocations: 0.9684 MB / 0.783 GB, free: 13.66 MB / 0.6199 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002627/0.03267, allocations: 2.494 MB / 0.7854 GB, free: 10.86 MB / 0.6199 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.126e-05/0.03268, allocations: 3.938 kB / 0.7854 GB, free: 10.85 MB / 0.6199 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.00168/0.03436, allocations: 1.74 MB / 0.7871 GB, free: 8.992 MB / 0.6199 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001103/0.03447, allocations: 265.2 kB / 0.7874 GB, free: 8.68 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.546e-05/0.03449, allocations: 11.98 kB / 0.7874 GB, free: 8.668 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.955e-05/0.03452, allocations: 16 kB / 0.7874 GB, free: 8.652 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004713/0.03499, allocations: 239.6 kB / 0.7876 GB, free: 8.418 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.734e-05/0.035, allocations: 20.23 kB / 0.7876 GB, free: 8.398 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004166/0.03542, allocations: 71.95 kB / 0.7877 GB, free: 8.328 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.224e-05/0.03547, allocations: 48 kB / 0.7878 GB, free: 8.281 MB / 0.6199 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005871/0.03606, allocations: 0.5716 MB / 0.7883 GB, free: 7.672 MB / 0.6199 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.711e-05/0.03616, allocations: 87.48 kB / 0.7884 GB, free: 7.586 MB / 0.6199 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001109/0.03627, allocations: 85.28 kB / 0.7885 GB, free: 7.5 MB / 0.6199 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.355e-06/0.03628, allocations: 12 kB / 0.7885 GB, free: 7.488 MB / 0.6199 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.2e-05/0.03629, allocations: 0 / 0.7885 GB, free: 7.488 MB / 0.6199 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.925e-06/0.0363, allocations: 7.984 kB / 0.7885 GB, free: 7.48 MB / 0.6199 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002244/0.03854, allocations: 2.318 MB / 0.7908 GB, free: 5.047 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.258e-06/0.03854, allocations: 0 / 0.7908 GB, free: 5.047 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006082/0.03915, allocations: 171.8 kB / 0.7909 GB, free: 4.879 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.753e-06/0.03916, allocations: 7.938 kB / 0.7909 GB, free: 4.871 MB / 0.6199 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.863e-05/0.03921, allocations: 35.98 kB / 0.791 GB, free: 4.836 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.889e-06/0.03921, allocations: 4 kB / 0.791 GB, free: 4.832 MB / 0.6199 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.817e-06/0.03922, allocations: 3.938 kB / 0.791 GB, free: 4.828 MB / 0.6199 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001954/0.04117, allocations: 2.245 MB / 0.7932 GB, free: 2.457 MB / 0.6199 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002842/0.04146, allocations: 163.4 kB / 0.7933 GB, free: 2.297 MB / 0.6199 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001089/0.04156, allocations: 56.11 kB / 0.7934 GB, free: 2.242 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002923/0.04186, allocations: 51.95 kB / 0.7934 GB, free: 2.191 MB / 0.6199 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001638/0.04202, allocations: 91.86 kB / 0.7935 GB, free: 2.102 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.255e-05/0.04206, allocations: 39.97 kB / 0.7936 GB, free: 2.062 MB / 0.6199 GB Notification: Performance of sorting global known variables: time 0.0003115/0.04237, allocations: 366.9 kB / 0.7939 GB, free: 1.707 MB / 0.6199 GB Notification: Performance of sort global known variables: time 8e-08/0.04237, allocations: 4 kB / 0.7939 GB, free: 1.703 MB / 0.6199 GB Notification: Performance of remove unused functions: time 0.0006634/0.04304, allocations: 244 kB / 0.7941 GB, free: 1.465 MB / 0.6199 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001911/0.04323, allocations: 188.9 kB / 0.7943 GB, free: 1.273 MB / 0.6199 GB Notification: Performance of simCode: created initialization part: time 0.001539/0.04477, allocations: 1.836 MB / 0.7961 GB, free: 15.24 MB / 0.6355 GB Notification: Performance of simCode: created event and clocks part: time 2.174e-06/0.04477, allocations: 0 / 0.7961 GB, free: 15.24 MB / 0.6355 GB Notification: Performance of simCode: created simulation system equations: time 0.0006988/0.04547, allocations: 0.9584 MB / 0.7971 GB, free: 14.17 MB / 0.6355 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008283/0.0463, allocations: 256.9 kB / 0.7973 GB, free: 13.93 MB / 0.6355 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002787/0.04908, allocations: 2.37 MB / 0.7996 GB, free: 11.53 MB / 0.6355 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002427/0.04933, allocations: 362 kB / 0.8 GB, free: 11.15 MB / 0.6355 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001647/0.04949, allocations: 68.5 kB / 0.8 GB, free: 11.08 MB / 0.6355 GB Notification: Performance of SimCode: time 1.733e-06/0.04949, allocations: 0 / 0.8 GB, free: 11.08 MB / 0.6355 GB Notification: Performance of Templates: time 0.01312/0.06262, allocations: 12.38 MB / 0.8121 GB, free: 15.07 MB / 0.6512 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 7.094341051066294]