Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001636/0.001636, allocations: 84.53 kB / 19.93 MB, free: 4.605 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001697/0.001697, allocations: 173.9 kB / 23.21 MB, free: 1.328 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.033/1.033, allocations: 177.1 MB / 203.5 MB, free: 5.758 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.644/1.644, allocations: 273.5 MB / 0.5209 GB, free: 15.11 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 3.527e-06/3.527e-06, allocations: 0 / 0.7558 GB, free: 10.85 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.274e-05/3.627e-05, allocations: 2.281 kB / 0.7558 GB, free: 10.84 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.007762/0.007799, allocations: 9.873 MB / 0.7654 GB, free: 1.004 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.004397/0.0122, allocations: 2.243 MB / 0.7676 GB, free: 14.76 MB / 0.6043 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001457/0.01365, allocations: 12 kB / 0.7676 GB, free: 14.75 MB / 0.6043 GB Notification: Performance of NFTyping.typeComponents: time 0.0005426/0.0142, allocations: 229.6 kB / 0.7678 GB, free: 14.52 MB / 0.6043 GB Notification: Performance of NFTyping.typeBindings: time 0.001585/0.01578, allocations: 0.6858 MB / 0.7685 GB, free: 13.83 MB / 0.6043 GB Notification: Performance of NFTyping.typeClassSections: time 0.001161/0.01694, allocations: 0.6432 MB / 0.7691 GB, free: 13.19 MB / 0.6043 GB Notification: Performance of NFFlatten.flatten: time 0.002516/0.01946, allocations: 2.668 MB / 0.7717 GB, free: 10.51 MB / 0.6043 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005661/0.02002, allocations: 365.7 kB / 0.7721 GB, free: 10.12 MB / 0.6043 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001618/0.02164, allocations: 1.357 MB / 0.7734 GB, free: 8.762 MB / 0.6043 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0008412/0.02248, allocations: 0.7245 MB / 0.7741 GB, free: 8.035 MB / 0.6043 GB Notification: Performance of NFPackage.collectConstants: time 0.0002689/0.02275, allocations: 280 kB / 0.7744 GB, free: 7.762 MB / 0.6043 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002948/0.02305, allocations: 280 kB / 0.7746 GB, free: 7.488 MB / 0.6043 GB Notification: Performance of NFScalarize.scalarize: time 0.0002377/0.02328, allocations: 442.5 kB / 0.7751 GB, free: 7.055 MB / 0.6043 GB Notification: Performance of NFVerifyModel.verify: time 0.0007124/0.024, allocations: 0.7641 MB / 0.7758 GB, free: 6.289 MB / 0.6043 GB Notification: Performance of NFConvertDAE.convert: time 0.001973/0.02597, allocations: 2.915 MB / 0.7787 GB, free: 3.367 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 5.931e-06/0.02597, allocations: 0 / 0.7787 GB, free: 3.367 MB / 0.6043 GB Notification: Performance of FrontEnd: time 2.524e-06/0.02598, allocations: 0 / 0.7787 GB, free: 3.367 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 3.702e-05/0.02601, allocations: 0 / 0.7787 GB, free: 3.367 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.003088/0.0291, allocations: 2.483 MB / 0.7811 GB, free: 0.7305 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 6.879e-05/0.02917, allocations: 8.031 kB / 0.7811 GB, free: 0.7227 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002948/0.02947, allocations: 194.8 kB / 0.7813 GB, free: 0.5312 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001164/0.03063, allocations: 0.8683 MB / 0.7821 GB, free: 15.62 MB / 0.6199 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.298e-05/0.03069, allocations: 90.17 kB / 0.7822 GB, free: 15.53 MB / 0.6199 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001972/0.03089, allocations: 143.8 kB / 0.7823 GB, free: 15.39 MB / 0.6199 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.00226/0.03315, allocations: 1.765 MB / 0.7841 GB, free: 13.48 MB / 0.6199 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.039e-05/0.03321, allocations: 23.91 kB / 0.7841 GB, free: 13.46 MB / 0.6199 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.672e-05/0.0333, allocations: 47.98 kB / 0.7841 GB, free: 13.41 MB / 0.6199 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.805e-05/0.03331, allocations: 28 kB / 0.7842 GB, free: 13.38 MB / 0.6199 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001882/0.0352, allocations: 1.585 MB / 0.7857 GB, free: 11.73 MB / 0.6199 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004076/0.03927, allocations: 3.907 MB / 0.7895 GB, free: 7.742 MB / 0.6199 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002137/0.04141, allocations: 1.737 MB / 0.7912 GB, free: 5.887 MB / 0.6199 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001005/0.04241, allocations: 1.003 MB / 0.7922 GB, free: 4.793 MB / 0.6199 GB Notification: Performance of preOpt evalFunc (simulation): time 6.63e-05/0.04248, allocations: 23.98 kB / 0.7922 GB, free: 4.77 MB / 0.6199 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001836/0.04432, allocations: 2.271 MB / 0.7944 GB, free: 2.262 MB / 0.6199 GB Notification: Performance of pre-optimization done (n=198): time 5.039e-06/0.04432, allocations: 4 kB / 0.7944 GB, free: 2.258 MB / 0.6199 GB Notification: Performance of matching and sorting (n=210): time 0.009284/0.0536, allocations: 7.848 MB / 0.8021 GB, free: 9.875 MB / 0.6355 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0004463/0.05405, allocations: 1.173 MB / 0.8033 GB, free: 8.438 MB / 0.6355 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001258/0.05531, allocations: 1.031 MB / 0.8043 GB, free: 7.387 MB / 0.6355 GB Notification: Performance of collectPreVariables (initialization): time 0.0001451/0.05545, allocations: 101.7 kB / 0.8044 GB, free: 7.281 MB / 0.6355 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003776/0.05583, allocations: 0.5263 MB / 0.8049 GB, free: 6.746 MB / 0.6355 GB Notification: Performance of collectInitialBindings (initialization): time 0.000459/0.05629, allocations: 0.6859 MB / 0.8055 GB, free: 6.055 MB / 0.6355 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004103/0.0567, allocations: 364.7 kB / 0.8059 GB, free: 5.691 MB / 0.6355 GB Notification: Performance of setup shared object (initialization): time 8.497e-05/0.05679, allocations: 305.1 kB / 0.8062 GB, free: 5.391 MB / 0.6355 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001366/0.05815, allocations: 1.348 MB / 0.8075 GB, free: 3.93 MB / 0.6355 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001632/0.05978, allocations: 2.009 MB / 0.8095 GB, free: 1.523 MB / 0.6355 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.005289/0.06507, allocations: 5.239 MB / 0.8146 GB, free: 11.66 MB / 0.6512 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.695e-05/0.0651, allocations: 11.94 kB / 0.8146 GB, free: 11.64 MB / 0.6512 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.003983/0.06908, allocations: 3.633 MB / 0.8181 GB, free: 7.781 MB / 0.6512 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002222/0.0693, allocations: 0.5064 MB / 0.8186 GB, free: 7.164 MB / 0.6512 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.625e-05/0.06933, allocations: 20.06 kB / 0.8187 GB, free: 7.145 MB / 0.6512 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.58e-05/0.06938, allocations: 28 kB / 0.8187 GB, free: 7.117 MB / 0.6512 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009478/0.07032, allocations: 487.4 kB / 0.8191 GB, free: 6.641 MB / 0.6512 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.125e-05/0.07036, allocations: 31.94 kB / 0.8192 GB, free: 6.609 MB / 0.6512 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001108/0.07146, allocations: 127.9 kB / 0.8193 GB, free: 6.484 MB / 0.6512 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001235/0.07159, allocations: 99.98 kB / 0.8194 GB, free: 6.387 MB / 0.6512 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001317/0.0729, allocations: 1.137 MB / 0.8205 GB, free: 5.195 MB / 0.6512 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003081/0.07321, allocations: 179 kB / 0.8207 GB, free: 5.02 MB / 0.6512 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002475/0.07346, allocations: 157.6 kB / 0.8208 GB, free: 4.863 MB / 0.6512 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.303e-05/0.07347, allocations: 20 kB / 0.8208 GB, free: 4.844 MB / 0.6512 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.106e-05/0.07349, allocations: 0 / 0.8208 GB, free: 4.844 MB / 0.6512 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.318e-05/0.07351, allocations: 11.97 kB / 0.8209 GB, free: 4.832 MB / 0.6512 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00547/0.07898, allocations: 4.96 MB / 0.8257 GB, free: 15.68 MB / 0.6668 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.676e-06/0.07899, allocations: 3.938 kB / 0.8257 GB, free: 15.68 MB / 0.6668 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0009/0.07989, allocations: 347.5 kB / 0.826 GB, free: 15.34 MB / 0.6668 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.198e-05/0.0799, allocations: 4 kB / 0.826 GB, free: 15.34 MB / 0.6668 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001211/0.08002, allocations: 75.95 kB / 0.8261 GB, free: 15.26 MB / 0.6668 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.739e-06/0.08003, allocations: 8 kB / 0.8261 GB, free: 15.25 MB / 0.6668 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.318e-06/0.08003, allocations: 4 kB / 0.8261 GB, free: 15.25 MB / 0.6668 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004536/0.08457, allocations: 4.671 MB / 0.8307 GB, free: 10.34 MB / 0.6668 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007955/0.08536, allocations: 390.7 kB / 0.8311 GB, free: 9.957 MB / 0.6668 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003215/0.08569, allocations: 104 kB / 0.8312 GB, free: 9.855 MB / 0.6668 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006839/0.08637, allocations: 103.2 kB / 0.8313 GB, free: 9.758 MB / 0.6668 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003318/0.0867, allocations: 207.7 kB / 0.8314 GB, free: 9.555 MB / 0.6668 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.681e-05/0.08679, allocations: 75.89 kB / 0.8315 GB, free: 9.48 MB / 0.6668 GB Notification: Performance of sorting global known variables: time 0.0007872/0.08758, allocations: 0.6897 MB / 0.8322 GB, free: 8.781 MB / 0.6668 GB Notification: Performance of sort global known variables: time 1.5e-07/0.08758, allocations: 4 kB / 0.8322 GB, free: 8.777 MB / 0.6668 GB Notification: Performance of remove unused functions: time 0.001509/0.08908, allocations: 488 kB / 0.8327 GB, free: 8.301 MB / 0.6668 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.00033/0.08941, allocations: 311.8 kB / 0.833 GB, free: 7.973 MB / 0.6668 GB Notification: Performance of simCode: created initialization part: time 0.003687/0.0931, allocations: 3.83 MB / 0.8367 GB, free: 3.738 MB / 0.6668 GB Notification: Performance of simCode: created event and clocks part: time 4.658e-06/0.09311, allocations: 0 / 0.8367 GB, free: 3.738 MB / 0.6668 GB Notification: Performance of simCode: created simulation system equations: time 0.001735/0.09484, allocations: 2.035 MB / 0.8387 GB, free: 1.484 MB / 0.6668 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002036/0.09688, allocations: 0.5527 MB / 0.8392 GB, free: 0.9648 MB / 0.6668 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005893/0.1028, allocations: 4.739 MB / 0.8439 GB, free: 12.19 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005884/0.1034, allocations: 0.6626 MB / 0.8445 GB, free: 11.49 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004697/0.1038, allocations: 132.5 kB / 0.8446 GB, free: 11.36 MB / 0.6824 GB Notification: Performance of SimCode: time 2.154e-06/0.1038, allocations: 4 kB / 0.8446 GB, free: 11.36 MB / 0.6824 GB Notification: Performance of Templates: time 0.4219/0.5257, allocations: 26.6 MB / 0.8706 GB, free: 100.2 MB / 0.6824 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 8.179505423177034]