Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001192/0.001192, allocations: 84.53 kB / 19.93 MB, free: 4.609 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001028/0.001028, allocations: 173.9 kB / 23.21 MB, free: 1.328 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9534/0.9534, allocations: 177.1 MB / 203.5 MB, free: 5.746 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.602/1.602, allocations: 273.5 MB / 0.5209 GB, free: 15.04 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.094e-06/2.094e-06, allocations: 0 / 0.756 GB, free: 10.57 MB / 0.5887 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.683e-05/2.892e-05, allocations: 6.281 kB / 0.756 GB, free: 10.57 MB / 0.5887 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00467/0.004699, allocations: 5.1 MB / 0.761 GB, free: 5.516 MB / 0.5887 GB Notification: Performance of NFInst.instExpressions: time 0.001579/0.006278, allocations: 1.301 MB / 0.7622 GB, free: 4.215 MB / 0.5887 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002171/0.006495, allocations: 11.94 kB / 0.7622 GB, free: 4.203 MB / 0.5887 GB Notification: Performance of NFTyping.typeComponents: time 0.0002293/0.006725, allocations: 126.8 kB / 0.7624 GB, free: 4.078 MB / 0.5887 GB Notification: Performance of NFTyping.typeBindings: time 0.0004484/0.007173, allocations: 368.8 kB / 0.7627 GB, free: 3.715 MB / 0.5887 GB Notification: Performance of NFTyping.typeClassSections: time 0.0003997/0.007573, allocations: 263.6 kB / 0.763 GB, free: 3.457 MB / 0.5887 GB Notification: Performance of NFFlatten.flatten: time 0.0008106/0.008383, allocations: 1.279 MB / 0.7642 GB, free: 2.172 MB / 0.5887 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003012/0.008684, allocations: 203.4 kB / 0.7644 GB, free: 1.961 MB / 0.5887 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005114/0.009196, allocations: 0.6511 MB / 0.765 GB, free: 1.309 MB / 0.5887 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004091/0.009605, allocations: 374.9 kB / 0.7654 GB, free: 0.9414 MB / 0.5887 GB Notification: Performance of NFPackage.collectConstants: time 0.0001063/0.009711, allocations: 108 kB / 0.7655 GB, free: 0.8359 MB / 0.5887 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001185/0.00983, allocations: 108 kB / 0.7656 GB, free: 0.7305 MB / 0.5887 GB Notification: Performance of NFScalarize.scalarize: time 0.0001191/0.009949, allocations: 207.2 kB / 0.7658 GB, free: 0.5273 MB / 0.5887 GB Notification: Performance of NFVerifyModel.verify: time 0.0002819/0.01023, allocations: 387.1 kB / 0.7662 GB, free: 152 kB / 0.5887 GB Notification: Performance of NFConvertDAE.convert: time 0.001093/0.01132, allocations: 1.176 MB / 0.7673 GB, free: 14.97 MB / 0.6043 GB Notification: Performance of FrontEnd - DAE generated: time 3.006e-06/0.01133, allocations: 0 / 0.7673 GB, free: 14.97 MB / 0.6043 GB Notification: Performance of FrontEnd: time 1.973e-06/0.01133, allocations: 0 / 0.7673 GB, free: 14.97 MB / 0.6043 GB Notification: Performance of Transformations before backend: time 1.078e-05/0.01134, allocations: 0 / 0.7673 GB, free: 14.97 MB / 0.6043 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001494/0.01283, allocations: 1.385 MB / 0.7687 GB, free: 13.49 MB / 0.6043 GB Notification: Performance of prepare preOptimizeDAE: time 5.069e-05/0.01288, allocations: 8.031 kB / 0.7687 GB, free: 13.48 MB / 0.6043 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001246/0.01301, allocations: 108.3 kB / 0.7688 GB, free: 13.38 MB / 0.6043 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004687/0.01348, allocations: 453.3 kB / 0.7692 GB, free: 12.91 MB / 0.6043 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.718e-05/0.01351, allocations: 53.67 kB / 0.7693 GB, free: 12.86 MB / 0.6043 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.872e-05/0.0136, allocations: 76.33 kB / 0.7693 GB, free: 12.78 MB / 0.6043 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0009301/0.01453, allocations: 0.8857 MB / 0.7702 GB, free: 11.84 MB / 0.6043 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.836e-05/0.01456, allocations: 11.89 kB / 0.7702 GB, free: 11.83 MB / 0.6043 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.189e-05/0.0146, allocations: 31.98 kB / 0.7702 GB, free: 11.8 MB / 0.6043 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.178e-05/0.01462, allocations: 16 kB / 0.7703 GB, free: 11.78 MB / 0.6043 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008923/0.01551, allocations: 0.7763 MB / 0.771 GB, free: 10.97 MB / 0.6043 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002081/0.01759, allocations: 1.919 MB / 0.7729 GB, free: 9.004 MB / 0.6043 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001106/0.01869, allocations: 0.7274 MB / 0.7736 GB, free: 8.234 MB / 0.6043 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004583/0.01915, allocations: 485.6 kB / 0.7741 GB, free: 7.723 MB / 0.6043 GB Notification: Performance of preOpt evalFunc (simulation): time 2.317e-05/0.01918, allocations: 8.656 kB / 0.7741 GB, free: 7.715 MB / 0.6043 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0007798/0.01996, allocations: 1.037 MB / 0.7751 GB, free: 6.555 MB / 0.6043 GB Notification: Performance of pre-optimization done (n=99): time 2.535e-06/0.01996, allocations: 4 kB / 0.7751 GB, free: 6.551 MB / 0.6043 GB Notification: Performance of matching and sorting (n=105): time 0.00331/0.02327, allocations: 3.225 MB / 0.7782 GB, free: 3.133 MB / 0.6043 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001858/0.02345, allocations: 0.5459 MB / 0.7788 GB, free: 2.461 MB / 0.6043 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004162/0.02387, allocations: 0.5144 MB / 0.7793 GB, free: 1.934 MB / 0.6043 GB Notification: Performance of collectPreVariables (initialization): time 5.119e-05/0.02392, allocations: 57.7 kB / 0.7793 GB, free: 1.871 MB / 0.6043 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001705/0.02409, allocations: 337.4 kB / 0.7797 GB, free: 1.535 MB / 0.6043 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001736/0.02427, allocations: 345.2 kB / 0.78 GB, free: 1.195 MB / 0.6043 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001695/0.02443, allocations: 186.6 kB / 0.7802 GB, free: 1.008 MB / 0.6043 GB Notification: Performance of setup shared object (initialization): time 0.0004482/0.02488, allocations: 398.7 kB / 0.7805 GB, free: 0.6094 MB / 0.6043 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005734/0.02546, allocations: 0.6291 MB / 0.7812 GB, free: 15.92 MB / 0.6199 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006682/0.02612, allocations: 0.9299 MB / 0.7821 GB, free: 14.81 MB / 0.6199 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002271/0.0284, allocations: 2.47 MB / 0.7845 GB, free: 12.04 MB / 0.6199 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.488e-06/0.0284, allocations: 8 kB / 0.7845 GB, free: 12.03 MB / 0.6199 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.001534/0.02993, allocations: 1.703 MB / 0.7861 GB, free: 10.2 MB / 0.6199 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001118/0.03005, allocations: 259.3 kB / 0.7864 GB, free: 9.895 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.122e-05/0.03006, allocations: 12.06 kB / 0.7864 GB, free: 9.883 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.216e-05/0.03008, allocations: 12 kB / 0.7864 GB, free: 9.871 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004915/0.03057, allocations: 243.6 kB / 0.7866 GB, free: 9.633 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.376e-05/0.03059, allocations: 12 kB / 0.7867 GB, free: 9.621 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003014/0.03089, allocations: 67.83 kB / 0.7867 GB, free: 9.555 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.253e-05/0.03094, allocations: 55.98 kB / 0.7868 GB, free: 9.5 MB / 0.6199 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008016/0.03174, allocations: 0.5478 MB / 0.7873 GB, free: 8.914 MB / 0.6199 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 7.238e-05/0.03181, allocations: 83.52 kB / 0.7874 GB, free: 8.832 MB / 0.6199 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.585e-05/0.03191, allocations: 87.64 kB / 0.7875 GB, free: 8.746 MB / 0.6199 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.67e-06/0.03191, allocations: 8 kB / 0.7875 GB, free: 8.738 MB / 0.6199 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.065e-05/0.03193, allocations: 3.328 kB / 0.7875 GB, free: 8.738 MB / 0.6199 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.254e-06/0.03193, allocations: 3.984 kB / 0.7875 GB, free: 8.734 MB / 0.6199 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002014/0.03395, allocations: 2.131 MB / 0.7896 GB, free: 6.496 MB / 0.6199 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.877e-06/0.03395, allocations: 3.984 kB / 0.7896 GB, free: 6.492 MB / 0.6199 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004333/0.03438, allocations: 167.8 kB / 0.7897 GB, free: 6.328 MB / 0.6199 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.803e-06/0.03439, allocations: 11.88 kB / 0.7897 GB, free: 6.316 MB / 0.6199 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.342e-05/0.03443, allocations: 31.98 kB / 0.7898 GB, free: 6.285 MB / 0.6199 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.629e-06/0.03444, allocations: 8 kB / 0.7898 GB, free: 6.277 MB / 0.6199 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.282e-06/0.03444, allocations: 0 / 0.7898 GB, free: 6.277 MB / 0.6199 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001818/0.03626, allocations: 2.088 MB / 0.7918 GB, free: 4.062 MB / 0.6199 GB Notification: Performance of postOpt removeConstants (simulation): time 6.876e-05/0.03633, allocations: 67.52 kB / 0.7919 GB, free: 3.996 MB / 0.6199 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.25e-05/0.03642, allocations: 51.98 kB / 0.7919 GB, free: 3.945 MB / 0.6199 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002327/0.03665, allocations: 47.95 kB / 0.792 GB, free: 3.898 MB / 0.6199 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001483/0.0368, allocations: 92.86 kB / 0.7921 GB, free: 3.809 MB / 0.6199 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.652e-05/0.03684, allocations: 35.97 kB / 0.7921 GB, free: 3.773 MB / 0.6199 GB Notification: Performance of sorting global known variables: time 0.0002651/0.0371, allocations: 358.9 kB / 0.7924 GB, free: 3.426 MB / 0.6199 GB Notification: Performance of sort global known variables: time 8.1e-08/0.0371, allocations: 0 / 0.7924 GB, free: 3.426 MB / 0.6199 GB Notification: Performance of remove unused functions: time 0.0004098/0.03751, allocations: 256 kB / 0.7927 GB, free: 3.176 MB / 0.6199 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001791/0.03769, allocations: 189.3 kB / 0.7929 GB, free: 2.988 MB / 0.6199 GB Notification: Performance of simCode: created initialization part: time 0.001666/0.03936, allocations: 1.802 MB / 0.7946 GB, free: 0.9805 MB / 0.6199 GB Notification: Performance of simCode: created event and clocks part: time 2.094e-06/0.03936, allocations: 0 / 0.7946 GB, free: 0.9805 MB / 0.6199 GB Notification: Performance of simCode: created simulation system equations: time 0.0006618/0.04002, allocations: 0.9465 MB / 0.7956 GB, free: 15.93 MB / 0.6355 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006747/0.0407, allocations: 262.2 kB / 0.7958 GB, free: 15.68 MB / 0.6355 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002457/0.04315, allocations: 2.409 MB / 0.7982 GB, free: 13.25 MB / 0.6355 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002367/0.04339, allocations: 378.8 kB / 0.7985 GB, free: 12.85 MB / 0.6355 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001486/0.04354, allocations: 64.5 kB / 0.7986 GB, free: 12.79 MB / 0.6355 GB Notification: Performance of SimCode: time 9.31e-07/0.04354, allocations: 0 / 0.7986 GB, free: 12.79 MB / 0.6355 GB Notification: Performance of Templates: time 0.0107/0.05424, allocations: 12.27 MB / 0.8106 GB, free: 0.8984 MB / 0.6355 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 7.68510319897905]