Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001194/0.001194, allocations: 84.53 kB / 19.93 MB, free: 4.609 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001123/0.001123, allocations: 173.9 kB / 23.21 MB, free: 1.328 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.93/0.93, allocations: 177.1 MB / 203.5 MB, free: 5.746 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.52/1.52, allocations: 273.5 MB / 0.5209 GB, free: 14.99 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.433e-06/1.433e-06, allocations: 0 / 0.7558 GB, free: 10.73 MB / 0.5887 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.803e-05/1.947e-05, allocations: 8.297 kB / 0.7558 GB, free: 10.72 MB / 0.5887 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001522/0.001541, allocations: 1.261 MB / 0.757 GB, free: 9.465 MB / 0.5887 GB
Notification: Performance of NFInst.instExpressions: time 0.0001948/0.001736, allocations: 54.19 kB / 0.7571 GB, free: 9.414 MB / 0.5887 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.332e-05/0.001769, allocations: 4 kB / 0.7571 GB, free: 9.41 MB / 0.5887 GB
Notification: Performance of NFTyping.typeComponents: time 8.567e-05/0.001855, allocations: 3.938 kB / 0.7571 GB, free: 9.406 MB / 0.5887 GB
Notification: Performance of NFTyping.typeBindings: time 3.771e-05/0.001893, allocations: 9.297 kB / 0.7571 GB, free: 9.398 MB / 0.5887 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001623/0.002055, allocations: 25.16 kB / 0.7571 GB, free: 9.375 MB / 0.5887 GB
Notification: Performance of NFFlatten.flatten: time 0.0001449/0.0022, allocations: 149.7 kB / 0.7572 GB, free: 9.234 MB / 0.5887 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.54e-05/0.002246, allocations: 0 / 0.7572 GB, free: 9.234 MB / 0.5887 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001103/0.002356, allocations: 71.94 kB / 0.7573 GB, free: 9.164 MB / 0.5887 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001307/0.002486, allocations: 82.36 kB / 0.7574 GB, free: 9.086 MB / 0.5887 GB
Notification: Performance of NFPackage.collectConstants: time 2.925e-05/0.002516, allocations: 12 kB / 0.7574 GB, free: 9.074 MB / 0.5887 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.663e-05/0.002532, allocations: 8 kB / 0.7574 GB, free: 9.066 MB / 0.5887 GB
Notification: Performance of NFScalarize.scalarize: time 3.62e-05/0.002569, allocations: 30.58 kB / 0.7574 GB, free: 9.039 MB / 0.5887 GB
Notification: Performance of NFVerifyModel.verify: time 3.962e-05/0.002608, allocations: 29.36 kB / 0.7575 GB, free: 9.012 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001092/0.002717, allocations: 90.44 kB / 0.7575 GB, free: 8.926 MB / 0.5887 GB
Notification: Performance of FrontEnd - DAE generated: time 1.734e-06/0.002719, allocations: 0 / 0.7575 GB, free: 8.926 MB / 0.5887 GB
Notification: Performance of FrontEnd: time 7.81e-07/0.00272, allocations: 0 / 0.7575 GB, free: 8.926 MB / 0.5887 GB
Notification: Performance of Transformations before backend: time 3.988e-06/0.002724, allocations: 1.312 kB / 0.7575 GB, free: 8.926 MB / 0.5887 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.000919/0.003643, allocations: 497.9 kB / 0.758 GB, free: 8.406 MB / 0.5887 GB
Notification: Performance of prepare preOptimizeDAE: time 4.087e-05/0.003684, allocations: 12.02 kB / 0.758 GB, free: 8.395 MB / 0.5887 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.783e-05/0.003722, allocations: 12.89 kB / 0.758 GB, free: 8.383 MB / 0.5887 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001372/0.003859, allocations: 125.7 kB / 0.7582 GB, free: 8.234 MB / 0.5887 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.097e-05/0.00387, allocations: 4.375 kB / 0.7582 GB, free: 8.23 MB / 0.5887 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.618e-05/0.003886, allocations: 5.906 kB / 0.7582 GB, free: 8.227 MB / 0.5887 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002894/0.004175, allocations: 151.4 kB / 0.7583 GB, free: 8.07 MB / 0.5887 GB
Notification: Performance of preOpt findStateOrder (simulation): time 8.416e-06/0.004184, allocations: 192 / 0.7583 GB, free: 8.07 MB / 0.5887 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.484e-05/0.004199, allocations: 4.375 kB / 0.7583 GB, free: 8.066 MB / 0.5887 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.839e-06/0.004203, allocations: 4.375 kB / 0.7583 GB, free: 8.062 MB / 0.5887 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003056/0.004509, allocations: 153 kB / 0.7585 GB, free: 7.914 MB / 0.5887 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002656/0.004775, allocations: 225.4 kB / 0.7587 GB, free: 7.66 MB / 0.5887 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001929/0.004968, allocations: 95.81 kB / 0.7588 GB, free: 7.559 MB / 0.5887 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001853/0.005153, allocations: 104.7 kB / 0.7589 GB, free: 7.453 MB / 0.5887 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.437e-05/0.005167, allocations: 4 kB / 0.7589 GB, free: 7.449 MB / 0.5887 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.075e-05/0.005188, allocations: 38.55 kB / 0.7589 GB, free: 7.402 MB / 0.5887 GB
Notification: Performance of pre-optimization done (n=11): time 1.583e-06/0.00519, allocations: 1.312 kB / 0.7589 GB, free: 7.402 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=11): time 0.0005805/0.00577, allocations: 282.8 kB / 0.7592 GB, free: 7.121 MB / 0.5887 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.949e-05/0.005809, allocations: 55.39 kB / 0.7592 GB, free: 7.055 MB / 0.5887 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.639e-05/0.005886, allocations: 119.2 kB / 0.7594 GB, free: 6.93 MB / 0.5887 GB
Notification: Performance of collectPreVariables (initialization): time 1.648e-05/0.005902, allocations: 29.7 kB / 0.7594 GB, free: 6.895 MB / 0.5887 GB
Notification: Performance of collectInitialEqns (initialization): time 4.308e-05/0.005945, allocations: 88.14 kB / 0.7595 GB, free: 6.805 MB / 0.5887 GB
Notification: Performance of collectInitialBindings (initialization): time 2.439e-05/0.00597, allocations: 39.64 kB / 0.7595 GB, free: 6.766 MB / 0.5887 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.189e-05/0.006012, allocations: 25.72 kB / 0.7595 GB, free: 6.734 MB / 0.5887 GB
Notification: Performance of setup shared object (initialization): time 7.622e-05/0.006088, allocations: 318.8 kB / 0.7598 GB, free: 6.414 MB / 0.5887 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000162/0.00625, allocations: 79.92 kB / 0.7599 GB, free: 6.336 MB / 0.5887 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001627/0.006413, allocations: 90.95 kB / 0.76 GB, free: 6.242 MB / 0.5887 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003169/0.00673, allocations: 182.8 kB / 0.7602 GB, free: 6.059 MB / 0.5887 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.475e-06/0.006732, allocations: 0 / 0.7602 GB, free: 6.059 MB / 0.5887 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0004002/0.007132, allocations: 210.7 kB / 0.7604 GB, free: 5.848 MB / 0.5887 GB
Notification: Performance of prepare postOptimizeDAE: time 1.676e-05/0.007149, allocations: 12.03 kB / 0.7604 GB, free: 5.836 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.542e-06/0.007155, allocations: 9.188 kB / 0.7604 GB, free: 5.828 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.485e-05/0.00717, allocations: 0 / 0.7604 GB, free: 5.828 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002103/0.007381, allocations: 71.94 kB / 0.7605 GB, free: 5.758 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.733e-06/0.007387, allocations: 3.984 kB / 0.7605 GB, free: 5.754 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001341/0.007521, allocations: 51.89 kB / 0.7605 GB, free: 5.703 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.405e-05/0.007535, allocations: 7.984 kB / 0.7605 GB, free: 5.695 MB / 0.5887 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 6.961e-05/0.007605, allocations: 113.8 kB / 0.7606 GB, free: 5.574 MB / 0.5887 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.297e-05/0.007618, allocations: 7.953 kB / 0.7606 GB, free: 5.566 MB / 0.5887 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0005002/0.008118, allocations: 305 kB / 0.7609 GB, free: 5.266 MB / 0.5887 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.458e-06/0.008123, allocations: 7.938 kB / 0.7609 GB, free: 5.258 MB / 0.5887 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.631e-06/0.008128, allocations: 0 / 0.7609 GB, free: 5.258 MB / 0.5887 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.95e-06/0.008133, allocations: 3.984 kB / 0.7609 GB, free: 5.254 MB / 0.5887 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001232/0.008256, allocations: 158.5 kB / 0.7611 GB, free: 5.07 MB / 0.5887 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.994e-06/0.008258, allocations: 0 / 0.7611 GB, free: 5.07 MB / 0.5887 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001874/0.008446, allocations: 79.92 kB / 0.7612 GB, free: 4.992 MB / 0.5887 GB
Notification: Performance of postOpt tearingSystem (simulation): time 4.248e-06/0.00845, allocations: 4 kB / 0.7612 GB, free: 4.988 MB / 0.5887 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.197e-05/0.008462, allocations: 11.94 kB / 0.7612 GB, free: 4.977 MB / 0.5887 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.334e-06/0.008464, allocations: 0 / 0.7612 GB, free: 4.977 MB / 0.5887 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.744e-06/0.008466, allocations: 3.938 kB / 0.7612 GB, free: 4.973 MB / 0.5887 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0004051/0.008871, allocations: 276.8 kB / 0.7615 GB, free: 4.684 MB / 0.5887 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.386e-05/0.008885, allocations: 11.89 kB / 0.7615 GB, free: 4.672 MB / 0.5887 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.787e-05/0.008903, allocations: 12.36 kB / 0.7615 GB, free: 4.66 MB / 0.5887 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001321/0.009035, allocations: 47.95 kB / 0.7615 GB, free: 4.613 MB / 0.5887 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.78e-05/0.009103, allocations: 33.09 kB / 0.7616 GB, free: 4.582 MB / 0.5887 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.608e-06/0.009112, allocations: 4 kB / 0.7616 GB, free: 4.578 MB / 0.5887 GB
Notification: Performance of sorting global known variables: time 3.245e-05/0.009145, allocations: 95.2 kB / 0.7616 GB, free: 4.484 MB / 0.5887 GB
Notification: Performance of sort global known variables: time 5e-08/0.009145, allocations: 0 / 0.7616 GB, free: 4.484 MB / 0.5887 GB
Notification: Performance of remove unused functions: time 0.0001367/0.009282, allocations: 28 kB / 0.7617 GB, free: 4.457 MB / 0.5887 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 8.152e-05/0.009363, allocations: 99.19 kB / 0.7618 GB, free: 4.348 MB / 0.5887 GB
Notification: Performance of simCode: created initialization part: time 0.0003937/0.009757, allocations: 192.6 kB / 0.762 GB, free: 4.16 MB / 0.5887 GB
Notification: Performance of simCode: created event and clocks part: time 1.713e-06/0.009759, allocations: 0 / 0.762 GB, free: 4.16 MB / 0.5887 GB
Notification: Performance of simCode: created simulation system equations: time 0.0001913/0.00995, allocations: 117.5 kB / 0.7621 GB, free: 4.047 MB / 0.5887 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000167/0.01012, allocations: 14.34 kB / 0.7621 GB, free: 4.035 MB / 0.5887 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0004118/0.01053, allocations: 274.2 kB / 0.7623 GB, free: 3.738 MB / 0.5887 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.959e-05/0.01059, allocations: 91.28 kB / 0.7624 GB, free: 3.629 MB / 0.5887 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 8.885e-05/0.01068, allocations: 20.48 kB / 0.7624 GB, free: 3.605 MB / 0.5887 GB
Notification: Performance of SimCode: time 6.62e-07/0.01068, allocations: 0 / 0.7624 GB, free: 3.605 MB / 0.5887 GB
Notification: Performance of Templates: time 0.002465/0.01314, allocations: 1.926 MB / 0.7643 GB, free: 1.691 MB / 0.5887 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 6.441325875930488]