Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007657/0.0007657, allocations: 76.55 kB / 19.93 MB, free: 4.637 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0007993/0.0007993, allocations: 177.9 kB / 23.22 MB, free: 1.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8236/0.8236, allocations: 177.1 MB / 203.5 MB, free: 5.742 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.07667/0.07667, allocations: 17.45 MB / 277.4 MB, free: 11.77 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics")
translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.844e-06/1.844e-06, allocations: 0 / 412.9 MB, free: 15.76 MB / 394.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.782e-05/1.967e-05, allocations: 6.219 kB / 412.9 MB, free: 15.75 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.EnzymeKinetics): time 0.03021/0.03023, allocations: 27.3 MB / 440.2 MB, free: 4.531 MB / 410.7 MB
Notification: Performance of NFInst.instExpressions: time 0.1647/0.1949, allocations: 17.16 MB / 457.3 MB, free: 55.96 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003773/0.1953, allocations: 21.44 kB / 457.3 MB, free: 55.95 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0005291/0.1958, allocations: 385.4 kB / 457.7 MB, free: 55.75 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.001655/0.1974, allocations: 1.726 MB / 459.4 MB, free: 54.7 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.002319/0.1998, allocations: 2.603 MB / 462 MB, free: 53.17 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.000881/0.2006, allocations: 2.043 MB / 464.1 MB, free: 52.12 MB / 410.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0005515/0.2012, allocations: 0.9239 MB / 465 MB, free: 51.7 MB / 410.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0006763/0.2019, allocations: 1.381 MB / 466.4 MB, free: 51.2 MB / 410.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0006747/0.2025, allocations: 0.9238 MB / 467.3 MB, free: 50.97 MB / 410.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001436/0.2027, allocations: 176.9 kB / 467.5 MB, free: 50.97 MB / 410.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.001915/0.2046, allocations: 2.071 MB / 469.6 MB, free: 50.5 MB / 410.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001893/0.2048, allocations: 440.8 kB / 470 MB, free: 50.23 MB / 410.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0003284/0.2051, allocations: 0.6376 MB / 470.6 MB, free: 49.95 MB / 410.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.002591/0.2077, allocations: 4.499 MB / 475.1 MB, free: 48.06 MB / 410.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.536e-06/0.2077, allocations: 0 / 475.1 MB, free: 48.06 MB / 410.7 MB
Notification: Performance of FrontEnd: time 1.312e-06/0.2077, allocations: 0 / 475.1 MB, free: 48.06 MB / 410.7 MB
Notification: Performance of Transformations before backend: time 1.347e-05/0.2077, allocations: 2.656 kB / 475.1 MB, free: 48.06 MB / 410.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 337
 * Number of variables: 337
Notification: Performance of Generate backend data structure: time 0.001928/0.2097, allocations: 2.147 MB / 477.3 MB, free: 46.82 MB / 410.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.384e-05/0.2097, allocations: 10.81 kB / 477.3 MB, free: 46.82 MB / 410.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007051/0.2104, allocations: 343.6 kB / 477.6 MB, free: 46.71 MB / 410.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007187/0.2111, allocations: 0.7664 MB / 478.4 MB, free: 46.26 MB / 410.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.608e-05/0.2112, allocations: 207.5 kB / 478.6 MB, free: 46.09 MB / 410.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001404/0.2113, allocations: 143.6 kB / 478.7 MB, free: 46.04 MB / 410.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001431/0.2128, allocations: 1.72 MB / 480.5 MB, free: 45.36 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.126e-05/0.2128, allocations: 192 / 480.5 MB, free: 45.36 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.722e-05/0.2129, allocations: 56.66 kB / 480.5 MB, free: 45.32 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.514e-05/0.2129, allocations: 36.28 kB / 480.5 MB, free: 45.32 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001824/0.2147, allocations: 2.173 MB / 482.7 MB, free: 44.67 MB / 410.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004357/0.2191, allocations: 4.434 MB / 487.2 MB, free: 42.31 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002808/0.2219, allocations: 2.688 MB / 489.8 MB, free: 41.49 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0006927/0.2226, allocations: 0.7306 MB / 490.6 MB, free: 41.19 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004336/0.2269, allocations: 3.791 MB / 494.4 MB, free: 39.61 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.255e-05/0.2269, allocations: 44.58 kB / 494.4 MB, free: 39.56 MB / 410.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0002621/0.2272, allocations: 141.5 kB / 494.5 MB, free: 39.48 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=97): time 1.994e-06/0.2272, allocations: 0 / 494.5 MB, free: 39.48 MB / 410.7 MB
Notification: Performance of matching and sorting (n=116): time 0.008515/0.2357, allocations: 4.282 MB / 498.8 MB, free: 37.86 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.982e-05/0.2357, allocations: 66.69 kB / 498.9 MB, free: 37.8 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005356/0.2363, allocations: 0.7066 MB / 499.6 MB, free: 37.47 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.057e-05/0.2363, allocations: 45.95 kB / 499.6 MB, free: 37.42 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.00023/0.2366, allocations: 0.6616 MB / 0.4886 GB, free: 36.89 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0001691/0.2367, allocations: 426.3 kB / 0.489 GB, free: 36.55 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.000276/0.237, allocations: 294 kB / 0.4893 GB, free: 36.41 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 5.365e-05/0.2371, allocations: 351.2 kB / 0.4896 GB, free: 36.09 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000554/0.2376, allocations: 481.9 kB / 0.4901 GB, free: 35.92 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000789/0.2384, allocations: 0.9842 MB / 0.491 GB, free: 35.11 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001292/0.2397, allocations: 1.581 MB / 0.4926 GB, free: 33.95 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.184e-06/0.2397, allocations: 5.25 kB / 0.4926 GB, free: 33.95 MB / 410.7 MB
Notification: Performance of matching and sorting (n=197) (initialization): time 0.00284/0.2425, allocations: 1.978 MB / 0.4945 GB, free: 33.21 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.009e-05/0.2426, allocations: 18.88 kB / 0.4945 GB, free: 33.2 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.453e-05/0.2426, allocations: 16.5 kB / 0.4945 GB, free: 33.2 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001204/0.2438, allocations: 444.1 kB / 0.495 GB, free: 33.11 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006095/0.2444, allocations: 378.6 kB / 0.4953 GB, free: 33.08 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.00269/0.2471, allocations: 3.591 MB / 0.4988 GB, free: 29.97 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004356/0.2475, allocations: 49.98 kB / 0.4989 GB, free: 29.95 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.312e-05/0.2476, allocations: 92.66 kB / 0.499 GB, free: 29.93 MB / 410.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 75
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (190):
 * Single equations (assignments): 187
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0003114/0.2479, allocations: 315.8 kB / 0.4993 GB, free: 29.69 MB / 410.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001084/0.248, allocations: 113.6 kB / 0.4994 GB, free: 29.63 MB / 410.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00289/0.2509, allocations: 1.788 MB / 0.5011 GB, free: 28.77 MB / 410.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.561e-06/0.2509, allocations: 12 kB / 0.5011 GB, free: 28.76 MB / 410.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.328e-06/0.2509, allocations: 7.234 kB / 0.5011 GB, free: 28.76 MB / 410.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.142e-05/0.2509, allocations: 5.578 kB / 0.5011 GB, free: 28.76 MB / 410.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000841/0.2518, allocations: 1.001 MB / 0.5021 GB, free: 27.84 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.356e-06/0.2518, allocations: 0 / 0.5021 GB, free: 27.84 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004399/0.2522, allocations: 239.8 kB / 0.5023 GB, free: 27.64 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001099/0.2533, allocations: 421.5 kB / 0.5028 GB, free: 27.36 MB / 410.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.439e-05/0.2534, allocations: 45.23 kB / 0.5028 GB, free: 27.32 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002076/0.2555, allocations: 3.498 MB / 0.5062 GB, free: 23.79 MB / 410.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.222e-06/0.2555, allocations: 0 / 0.5062 GB, free: 23.79 MB / 410.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002838/0.2583, allocations: 2.326 MB / 0.5085 GB, free: 21.72 MB / 410.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002363/0.2585, allocations: 217.5 kB / 0.5087 GB, free: 21.54 MB / 410.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 7.419e-05/0.2586, allocations: 30.56 kB / 0.5087 GB, free: 21.52 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002863/0.2589, allocations: 27.14 kB / 0.5087 GB, free: 21.49 MB / 410.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001344/0.259, allocations: 108.7 kB / 0.5088 GB, free: 21.43 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.21e-05/0.2591, allocations: 53.66 kB / 0.5089 GB, free: 21.39 MB / 410.7 MB
Notification: Performance of sorting global known variables: time 0.0002589/0.2593, allocations: 447.9 kB / 0.5093 GB, free: 21.02 MB / 410.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.2593, allocations: 0 / 0.5093 GB, free: 21.02 MB / 410.7 MB
Notification: Performance of remove unused functions: time 0.001298/0.2606, allocations: 0.84 MB / 0.5101 GB, free: 20.2 MB / 410.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 6 (solution.temperature,P.logn,S.logn,ES.logn,E.logn,liquidWater.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (120):
 * Single equations (assignments): 117
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.000945/0.2616, allocations: 0.976 MB / 0.5111 GB, free: 19.34 MB / 410.7 MB
Notification: Performance of simCode: created initialization part: time 0.001434/0.263, allocations: 1.518 MB / 0.5126 GB, free: 17.91 MB / 410.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.325e-06/0.263, allocations: 0 / 0.5126 GB, free: 17.91 MB / 410.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0006636/0.2637, allocations: 0.8614 MB / 0.5134 GB, free: 17.02 MB / 410.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006396/0.2643, allocations: 238.1 kB / 0.5136 GB, free: 16.81 MB / 410.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002112/0.2664, allocations: 2.348 MB / 0.5159 GB, free: 14.44 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002383/0.2667, allocations: 0.5356 MB / 0.5165 GB, free: 13.89 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003059/0.267, allocations: 231.6 kB / 0.5167 GB, free: 13.66 MB / 410.7 MB
Notification: Performance of SimCode: time 8.22e-07/0.267, allocations: 0 / 0.5167 GB, free: 13.66 MB / 410.7 MB
Notification: Performance of Templates: time 0.02267/0.2896, allocations: 37.84 MB / 0.5536 GB, free: 8.465 MB / 442.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.sim & ./Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 6.335811452008784]
Failed to read output from testmodel.py, exit status != 0:
0.2957759937271476 0.302607433 0.09325955500000001
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x71025927cec0>