Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007375/0.0007375, allocations: 72.5 kB / 19.93 MB, free: 4.633 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0007838/0.0007838, allocations: 177.9 kB / 23.21 MB, free: 1.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8364/0.8364, allocations: 177.1 MB / 203.5 MB, free: 5.746 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08289/0.08289, allocations: 17.45 MB / 277.4 MB, free: 11.79 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.462e-06/1.462e-06, allocations: 0 / 412.8 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.382e-05/2.528e-05, allocations: 4.328 kB / 412.8 MB, free: 12.46 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.02456/0.02458, allocations: 35 MB / 447.8 MB, free: 5.477 MB / 346.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01469/0.03927, allocations: 10.88 MB / 458.7 MB, free: 11.63 MB / 362.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001948/0.04122, allocations: 111.1 kB / 458.8 MB, free: 11.52 MB / 362.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.003532/0.04475, allocations: 2.078 MB / 460.9 MB, free: 9.434 MB / 362.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.002816/0.04756, allocations: 1.966 MB / 462.9 MB, free: 7.453 MB / 362.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005118/0.05268, allocations: 4.31 MB / 467.2 MB, free: 3.125 MB / 362.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.00361/0.05629, allocations: 4.787 MB / 472 MB, free: 14.31 MB / 378.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0007824/0.05707, allocations: 0.8188 MB / 472.8 MB, free: 13.43 MB / 378.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001777/0.05885, allocations: 2.635 MB / 475.4 MB, free: 10.79 MB / 378.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001629/0.06048, allocations: 2.081 MB / 477.5 MB, free: 8.703 MB / 378.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003039/0.06079, allocations: 408 kB / 477.9 MB, free: 8.305 MB / 378.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003026/0.06381, allocations: 2.148 MB / 480.1 MB, free: 6.152 MB / 378.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006636/0.06447, allocations: 1.374 MB / 481.4 MB, free: 4.773 MB / 378.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0009798/0.06545, allocations: 1.496 MB / 482.9 MB, free: 3.273 MB / 378.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.005245/0.0707, allocations: 7.466 MB / 490.4 MB, free: 11.79 MB / 394.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.447e-06/0.0707, allocations: 0 / 490.4 MB, free: 11.79 MB / 394.7 MB
Notification: Performance of FrontEnd: time 2.234e-06/0.0707, allocations: 0 / 490.4 MB, free: 11.79 MB / 394.7 MB
Notification: Performance of Transformations before backend: time 6.421e-05/0.07077, allocations: 3.938 kB / 490.4 MB, free: 11.78 MB / 394.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.005648/0.07642, allocations: 5.424 MB / 495.8 MB, free: 6.297 MB / 394.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.111e-05/0.07646, allocations: 12.03 kB / 495.8 MB, free: 6.285 MB / 394.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001691/0.07815, allocations: 1.098 MB / 496.9 MB, free: 5.184 MB / 394.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002487/0.08064, allocations: 2.528 MB / 499.5 MB, free: 2.57 MB / 394.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003485/0.08099, allocations: 0.6375 MB / 0.4884 GB, free: 1.859 MB / 394.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003457/0.08133, allocations: 392.3 kB / 0.4887 GB, free: 1.477 MB / 394.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01091/0.09225, allocations: 15.38 MB / 0.5038 GB, free: 2.062 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.222e-05/0.0923, allocations: 192 / 0.5038 GB, free: 2.062 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002023/0.0925, allocations: 164.1 kB / 0.5039 GB, free: 1.902 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003613/0.09286, allocations: 0.591 MB / 0.5045 GB, free: 1.309 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0174/0.1103, allocations: 27.37 MB / 0.5312 GB, free: 5.914 MB / 442.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02525/0.1355, allocations: 25.91 MB / 0.5565 GB, free: 11.86 MB / 474.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003256/0.1388, allocations: 3.594 MB / 0.56 GB, free: 8.262 MB / 474.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.002498/0.1413, allocations: 3.052 MB / 0.563 GB, free: 5.207 MB / 474.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01504/0.1563, allocations: 15.37 MB / 0.578 GB, free: 5.793 MB / 490.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.981e-05/0.1563, allocations: 48.56 kB / 0.5781 GB, free: 5.734 MB / 490.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.446e-06/0.1563, allocations: 0 / 0.5781 GB, free: 5.734 MB / 490.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1822/0.3386, allocations: 29.04 MB / 0.6064 GB, free: 144.3 MB / 490.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.567e-05/0.3386, allocations: 77.16 kB / 0.6065 GB, free: 144.3 MB / 490.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001992/0.3406, allocations: 2.32 MB / 0.6088 GB, free: 143.4 MB / 490.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0004466/0.341, allocations: 65.42 kB / 0.6088 GB, free: 143.4 MB / 490.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0006694/0.3417, allocations: 2.28 MB / 0.6111 GB, free: 141.9 MB / 490.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0006579/0.3424, allocations: 1.122 MB / 0.6122 GB, free: 141.1 MB / 490.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001118/0.3435, allocations: 0.984 MB / 0.6131 GB, free: 140.8 MB / 490.7 MB
Notification: Performance of setup shared object (initialization): time 2.627e-05/0.3435, allocations: 301.1 kB / 0.6134 GB, free: 140.5 MB / 490.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.003381/0.3469, allocations: 4.215 MB / 0.6175 GB, free: 138.5 MB / 490.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003813/0.3507, allocations: 5.372 MB / 0.6228 GB, free: 133.9 MB / 490.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.1973/0.548, allocations: 74.04 MB / 0.6951 GB, free: 60.21 MB / 490.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 2.264585368335247]
Failed to read output from testmodel.py, exit status != 0:
0.7173553323373199 0.564652811 0.492626925
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x78b03c838710>