Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007729/0.0007729, allocations: 76.5 kB / 19.93 MB, free: 4.633 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008054/0.0008054, allocations: 174.3 kB / 23.21 MB, free: 1.352 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.843/0.843, allocations: 177.1 MB / 203.5 MB, free: 5.754 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08161/0.08161, allocations: 17.44 MB / 277.4 MB, free: 11.79 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.333e-06/1.333e-06, allocations: 0 / 412.9 MB, free: 15.75 MB / 394.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.672e-05/1.805e-05, allocations: 6.219 kB / 412.9 MB, free: 15.74 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.2876/0.2876, allocations: 34.95 MB / 447.8 MB, free: 43.5 MB / 410.8 MB
Notification: Performance of NFInst.instExpressions: time 0.009595/0.2972, allocations: 10.89 MB / 458.7 MB, free: 41.22 MB / 410.8 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0008056/0.298, allocations: 108.9 kB / 458.8 MB, free: 41.16 MB / 410.8 MB
Notification: Performance of NFTyping.typeComponents: time 0.00238/0.3004, allocations: 2.086 MB / 460.9 MB, free: 40.09 MB / 410.8 MB
Notification: Performance of NFTyping.typeBindings: time 0.00183/0.3022, allocations: 1.968 MB / 462.9 MB, free: 38.78 MB / 410.8 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0033/0.3055, allocations: 4.301 MB / 467.2 MB, free: 36.16 MB / 410.8 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.002351/0.3078, allocations: 4.79 MB / 472 MB, free: 33.75 MB / 410.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0006576/0.3085, allocations: 0.8173 MB / 472.8 MB, free: 33.3 MB / 410.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001308/0.3098, allocations: 2.63 MB / 475.4 MB, free: 32.17 MB / 410.8 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001326/0.3111, allocations: 2.084 MB / 477.5 MB, free: 31.48 MB / 410.8 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002734/0.3114, allocations: 411.4 kB / 477.9 MB, free: 31.48 MB / 410.8 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.002279/0.3137, allocations: 2.136 MB / 480 MB, free: 31 MB / 410.8 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004849/0.3142, allocations: 1.377 MB / 481.4 MB, free: 30.21 MB / 410.8 MB
Notification: Performance of NFVerifyModel.verify: time 0.0007437/0.3149, allocations: 1.501 MB / 482.9 MB, free: 29.52 MB / 410.8 MB
Notification: Performance of NFConvertDAE.convert: time 0.004858/0.3198, allocations: 7.472 MB / 490.4 MB, free: 26.22 MB / 410.8 MB
Notification: Performance of FrontEnd - DAE generated: time 3.707e-06/0.3198, allocations: 0 / 490.4 MB, free: 26.22 MB / 410.8 MB
Notification: Performance of FrontEnd: time 1.643e-06/0.3198, allocations: 0 / 490.4 MB, free: 26.22 MB / 410.8 MB
Notification: Performance of Transformations before backend: time 4.848e-05/0.3198, allocations: 4 kB / 490.4 MB, free: 26.21 MB / 410.8 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.006051/0.3259, allocations: 5.418 MB / 495.8 MB, free: 23.16 MB / 410.8 MB
Notification: Performance of prepare preOptimizeDAE: time 3.942e-05/0.3259, allocations: 9.781 kB / 495.8 MB, free: 23.16 MB / 410.8 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001794/0.3277, allocations: 1.098 MB / 496.9 MB, free: 22.7 MB / 410.8 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002683/0.3304, allocations: 2.522 MB / 499.4 MB, free: 21.08 MB / 410.8 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003312/0.3307, allocations: 0.6388 MB / 0.4884 GB, free: 20.56 MB / 410.8 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003995/0.3311, allocations: 395.3 kB / 0.4887 GB, free: 20.43 MB / 410.8 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01058/0.3417, allocations: 15.38 MB / 0.5038 GB, free: 13.88 MB / 410.8 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.365e-05/0.3418, allocations: 192 / 0.5038 GB, free: 13.88 MB / 410.8 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002033/0.342, allocations: 170.5 kB / 0.5039 GB, free: 13.75 MB / 410.8 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.000303/0.3423, allocations: 0.5893 MB / 0.5045 GB, free: 13.62 MB / 410.8 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01366/0.3559, allocations: 27.37 MB / 0.5312 GB, free: 11.66 MB / 426.8 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02838/0.3843, allocations: 25.92 MB / 0.5565 GB, free: 1.637 MB / 442.8 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003462/0.3878, allocations: 3.584 MB / 0.56 GB, free: 14.04 MB / 458.8 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.002705/0.3905, allocations: 3.06 MB / 0.563 GB, free: 10.98 MB / 458.8 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01564/0.4061, allocations: 15.36 MB / 0.578 GB, free: 11.58 MB / 474.8 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.682e-05/0.4061, allocations: 56.5 kB / 0.5781 GB, free: 11.52 MB / 474.8 MB
Notification: Performance of pre-optimization done (n=227): time 3.577e-06/0.4061, allocations: 0 / 0.5781 GB, free: 11.52 MB / 474.8 MB
Notification: Performance of matching and sorting (n=324): time 0.04864/0.4548, allocations: 29.06 MB / 0.6064 GB, free: 14.28 MB / 0.4949 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.25e-05/0.4548, allocations: 77.41 kB / 0.6065 GB, free: 14.2 MB / 0.4949 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002703/0.4575, allocations: 2.316 MB / 0.6088 GB, free: 11.86 MB / 0.4949 GB
Notification: Performance of collectPreVariables (initialization): time 0.0008846/0.4584, allocations: 65.7 kB / 0.6088 GB, free: 11.79 MB / 0.4949 GB
Notification: Performance of collectInitialEqns (initialization): time 0.001123/0.4596, allocations: 2.288 MB / 0.6111 GB, free: 9.48 MB / 0.4949 GB
Notification: Performance of collectInitialBindings (initialization): time 0.001281/0.4608, allocations: 1.107 MB / 0.6122 GB, free: 8.363 MB / 0.4949 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001869/0.4627, allocations: 0.9964 MB / 0.6131 GB, free: 7.359 MB / 0.4949 GB
Notification: Performance of setup shared object (initialization): time 7.208e-05/0.4628, allocations: 305.1 kB / 0.6134 GB, free: 7.059 MB / 0.4949 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.004486/0.4673, allocations: 4.208 MB / 0.6175 GB, free: 2.848 MB / 0.4949 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.1825/0.6497, allocations: 5.371 MB / 0.6228 GB, free: 152.9 MB / 0.4949 GB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.1881/0.8379, allocations: 74.05 MB / 0.6951 GB, free: 112.2 MB / 0.4949 GB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 2.435993309132755]
Failed to read output from testmodel.py, exit status != 0:
0.8497396083548665 0.860308286 0.538473425
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x75b088fb3f20>