Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0007598/0.0007598, allocations: 76.45 kB / 19.93 MB, free: 4.629 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0007568/0.0007568, allocations: 177.9 kB / 23.22 MB, free: 1.34 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8283/0.8283, allocations: 177.1 MB / 203.5 MB, free: 5.734 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08221/0.08221, allocations: 17.36 MB / 277.3 MB, free: 11.85 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.483e-06/1.483e-06, allocations: 3.938 kB / 412.7 MB, free: 15.91 MB / 394.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.593e-05/1.741e-05, allocations: 2.281 kB / 412.7 MB, free: 15.91 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.2028/0.2028, allocations: 74.35 MB / 487.1 MB, free: 34.91 MB / 410.7 MB
Notification: Performance of NFInst.instExpressions: time 0.3325/0.5353, allocations: 191.2 MB / 0.6624 GB, free: 4.445 MB / 0.4948 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.008544/0.5438, allocations: 227.8 kB / 0.6626 GB, free: 4.445 MB / 0.4948 GB
Notification: Performance of NFTyping.typeComponents: time 0.008347/0.5522, allocations: 4.514 MB / 0.667 GB, free: 4.445 MB / 0.4948 GB
Notification: Performance of NFTyping.typeBindings: time 0.03648/0.5887, allocations: 18.5 MB / 0.6851 GB, free: 15.76 MB / 0.5105 GB
Notification: Performance of NFTyping.typeClassSections: time 0.06132/0.65, allocations: 33.51 MB / 0.7178 GB, free: 1.504 MB / 0.5105 GB
Notification: Performance of NFFlatten.flatten: time 0.06123/0.7112, allocations: 91.37 MB / 0.807 GB, free: 8.816 MB / 0.5886 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.5235/1.235, allocations: 52.24 MB / 0.8581 GB, free: 10.31 MB / 0.6199 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.101/1.336, allocations: 75.66 MB / 0.932 GB, free: 10.31 MB / 0.6199 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.07984/1.416, allocations: 51.48 MB / 0.9822 GB, free: 12.61 MB / 0.6355 GB
Notification: Performance of NFPackage.collectConstants: time 0.03418/1.45, allocations: 12.2 MB / 0.9941 GB, free: 416 kB / 0.6355 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.08532/1.535, allocations: 34.1 MB / 1.027 GB, free: 0.9648 MB / 0.6668 GB
Notification: Performance of NFScalarize.scalarize: time 0.04122/1.576, allocations: 24.25 MB / 1.051 GB, free: 12.14 MB / 0.698 GB
Notification: Performance of NFVerifyModel.verify: time 0.0574/1.634, allocations: 31.1 MB / 1.082 GB, free: 0.4922 MB / 0.7137 GB
Notification: Performance of NFConvertDAE.convert: time 0.6631/2.297, allocations: 168.9 MB / 1.246 GB, free: 99.57 MB / 0.745 GB
Notification: Performance of FrontEnd - DAE generated: time 6.853e-06/2.297, allocations: 2.844 kB / 1.246 GB, free: 99.57 MB / 0.745 GB
Notification: Performance of FrontEnd: time 1.573e-06/2.297, allocations: 1.031 kB / 1.246 GB, free: 99.57 MB / 0.745 GB
Notification: Performance of Transformations before backend: time 0.003411/2.3, allocations: 0 / 1.246 GB, free: 99.57 MB / 0.745 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2043/2.505, allocations: 71.17 MB / 1.316 GB, free: 63.06 MB / 0.745 GB
Notification: Performance of prepare preOptimizeDAE: time 4.015e-05/2.505, allocations: 9.438 kB / 1.316 GB, free: 63.06 MB / 0.745 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.05723/2.562, allocations: 11.94 MB / 1.328 GB, free: 56.22 MB / 0.745 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.07645/2.638, allocations: 42.62 MB / 1.369 GB, free: 14.99 MB / 0.745 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.004403/2.643, allocations: 9.237 MB / 1.378 GB, free: 4.422 MB / 0.745 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.2949/2.938, allocations: 4.597 MB / 1.383 GB, free: 214.7 MB / 0.745 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2353/3.173, allocations: 112.9 MB / 1.493 GB, free: 184.7 MB / 0.745 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.001848/3.175, allocations: 28.19 kB / 1.493 GB, free: 184.7 MB / 0.745 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.02969/3.204, allocations: 1.761 MB / 1.495 GB, free: 183.3 MB / 0.745 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0005509/3.205, allocations: 1.057 MB / 1.496 GB, free: 183.3 MB / 0.745 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.227/3.432, allocations: 153 MB / 1.645 GB, free: 34.54 MB / 0.745 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.107/4.539, allocations: 389.1 MB / 2.025 GB, free: 141.9 MB / 0.7606 GB
Notification: Performance of preOpt comSubExp (simulation): time 1.637/6.176, allocations: 0.6474 GB / 2.673 GB, free: 185.8 MB / 0.7606 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.07015/6.246, allocations: 60.05 MB / 2.731 GB, free: 159.1 MB / 0.7606 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.6476/6.893, allocations: 254.7 MB / 2.98 GB, free: 156.6 MB / 0.7606 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002187/6.894, allocations: 338.3 kB / 2.98 GB, free: 156.4 MB / 0.7606 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.05952/6.953, allocations: 29.13 MB / 3.009 GB, free: 149.3 MB / 0.7606 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001399/6.953, allocations: 0.75 kB / 3.009 GB, free: 149.3 MB / 0.7606 GB
Notification: Performance of matching and sorting (n=3387): time 1.409/8.362, allocations: 423.7 MB / 3.423 GB, free: 43.38 MB / 0.7606 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001749/8.362, allocations: 453.3 kB / 3.423 GB, free: 42.9 MB / 0.7606 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.3029/8.665, allocations: 30.72 MB / 3.453 GB, free: 179.9 MB / 0.7606 GB
Notification: Performance of collectPreVariables (initialization): time 0.01129/8.677, allocations: 0.5696 MB / 3.454 GB, free: 179.9 MB / 0.7606 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01177/8.688, allocations: 21.55 MB / 3.475 GB, free: 173.3 MB / 0.7606 GB
Notification: Performance of collectInitialBindings (initialization): time 0.01758/8.706, allocations: 12.26 MB / 3.487 GB, free: 165.3 MB / 0.7606 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.02637/8.732, allocations: 9.862 MB / 3.496 GB, free: 164.8 MB / 0.7606 GB
Notification: Performance of setup shared object (initialization): time 2.78e-05/8.732, allocations: 309.5 kB / 3.497 GB, free: 164.5 MB / 0.7606 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.04495/8.777, allocations: 39.05 MB / 3.535 GB, free: 150.3 MB / 0.7606 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.05505/8.832, allocations: 53.25 MB / 3.587 GB, free: 117 MB / 0.7606 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.09849/8.931, allocations: 96.36 MB / 3.681 GB, free: 46.72 MB / 0.7606 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005368/8.931, allocations: 128 kB / 3.681 GB, free: 46.59 MB / 0.7606 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 0.9868/9.918, allocations: 257.3 MB / 3.932 GB, free: 63.22 MB / 0.7606 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002434/9.918, allocations: 199.9 kB / 3.932 GB, free: 63.03 MB / 0.7606 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0004948/9.919, allocations: 448.9 kB / 3.933 GB, free: 62.59 MB / 0.7606 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.3858/10.3, allocations: 73.7 MB / 4.005 GB, free: 172.5 MB / 0.7763 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03254/10.34, allocations: 11.18 MB / 4.016 GB, free: 172.4 MB / 0.7763 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.6848/11.02, allocations: 309.6 MB / 4.318 GB, free: 154.1 MB / 0.7763 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03916/11.06, allocations: 2.474 MB / 4.32 GB, free: 154.1 MB / 0.7763 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01344/11.07, allocations: 2.799 MB / 4.323 GB, free: 154.1 MB / 0.7763 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.04059/11.12, allocations: 18.34 MB / 4.341 GB, free: 153.7 MB / 0.7763 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.01305/11.13, allocations: 3.172 MB / 4.344 GB, free: 153.7 MB / 0.7763 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.4468/11.58, allocations: 152.3 MB / 4.493 GB, free: 81.45 MB / 0.7763 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0002717/11.58, allocations: 359.8 kB / 4.493 GB, free: 81.1 MB / 0.7763 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0003749/11.58, allocations: 56 kB / 4.493 GB, free: 81.05 MB / 0.7763 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009164/11.58, allocations: 179.3 kB / 4.493 GB, free: 80.87 MB / 0.7763 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.8703/12.45, allocations: 223.3 MB / 4.711 GB, free: 135 MB / 0.7763 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002881/12.45, allocations: 14.34 kB / 4.711 GB, free: 135 MB / 0.7763 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02504/12.47, allocations: 7.252 MB / 4.719 GB, free: 134 MB / 0.7763 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.05215/12.52, allocations: 39.75 MB / 4.757 GB, free: 104.3 MB / 0.7763 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.009677/12.53, allocations: 1.449 MB / 4.759 GB, free: 102.9 MB / 0.7763 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.4819/13.02, allocations: 155.6 MB / 4.911 GB, free: 145.7 MB / 0.7763 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.382e-06/13.02, allocations: 13.84 kB / 4.911 GB, free: 145.7 MB / 0.7763 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.4639/13.48, allocations: 200.2 MB / 5.106 GB, free: 38.32 MB / 0.7763 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.02707/13.51, allocations: 11.32 MB / 5.117 GB, free: 28.44 MB / 0.7763 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01318/13.52, allocations: 0.9234 MB / 5.118 GB, free: 27.52 MB / 0.7763 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02605/13.55, allocations: 1.541 MB / 5.12 GB, free: 25.97 MB / 0.7763 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01483/13.56, allocations: 4.68 MB / 5.124 GB, free: 21.28 MB / 0.7763 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.005228/13.57, allocations: 1.386 MB / 5.126 GB, free: 19.89 MB / 0.7763 GB
Notification: Performance of sorting global known variables: time 0.3213/13.89, allocations: 20.8 MB / 5.146 GB, free: 140.3 MB / 0.7763 GB
Notification: Performance of sort global known variables: time 3e-08/13.89, allocations: 0.625 kB / 5.146 GB, free: 140.3 MB / 0.7763 GB
Notification: Performance of remove unused functions: time 0.08401/13.97, allocations: 20.21 MB / 5.166 GB, free: 139.7 MB / 0.7763 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.02586/14, allocations: 11.22 MB / 5.177 GB, free: 137.6 MB / 0.7763 GB
Notification: Performance of simCode: created initialization part: time 0.1369/14.13, allocations: 85.25 MB / 5.26 GB, free: 125.4 MB / 0.7763 GB
Notification: Performance of simCode: created event and clocks part: time 1.073e-05/14.13, allocations: 3.375 kB / 5.26 GB, free: 125.4 MB / 0.7763 GB
Notification: Performance of simCode: created simulation system equations: time 0.08284/14.22, allocations: 54.49 MB / 5.313 GB, free: 98.61 MB / 0.7763 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.04884/14.27, allocations: 7.696 MB / 5.321 GB, free: 92.5 MB / 0.7763 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.4205/14.69, allocations: 120.7 MB / 5.439 GB, free: 195.4 MB / 0.7919 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.03641/14.72, allocations: 29.65 MB / 5.467 GB, free: 193.4 MB / 0.7919 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.01731/14.74, allocations: 4.618 MB / 5.472 GB, free: 193.4 MB / 0.7919 GB
Notification: Performance of SimCode: time 1.683e-06/14.74, allocations: 0 / 5.472 GB, free: 193.4 MB / 0.7919 GB
Notification: Performance of Templates: time 6.146/20.89, allocations: 3.315 GB / 8.787 GB, free: 97.28 MB / 0.7919 GB
"
[Timeout remaining time 639]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 79.58925972506404]
Failed to read output from testmodel.py, exit status != 0:
20.894392954185605 20.900139893 18.601695663
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x76e2de7c8410>