Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00245/0.00245, allocations: 109.5 kB / 18.95 MB, free: 1.18 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002875/0.002875, allocations: 220.6 kB / 22.25 MB, free: 3.582 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.718/1.718, allocations: 230.6 MB / 256 MB, free: 9.602 MB / 202.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.687/3.687, allocations: 335.3 MB / 0.6325 GB, free: 7.223 MB / 442.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.005475/0.005475, allocations: 73.28 kB / 0.8681 GB, free: 5.645 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2666/0.2721, allocations: 112.8 MB / 0.9783 GB, free: 4.562 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.5298/0.8019, allocations: 10.24 MB / 0.9883 GB, free: 19.5 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.005917/0.8079, allocations: 2.459 MB / 0.9907 GB, free: 19.43 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.00157/0.8094, allocations: 24.94 kB / 0.9907 GB, free: 19.43 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0009055/0.8103, allocations: 297.5 kB / 0.991 GB, free: 19.32 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.002465/0.8128, allocations: 0.7503 MB / 0.9917 GB, free: 18.98 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.001919/0.8147, allocations: 0.5785 MB / 0.9923 GB, free: 18.97 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.003716/0.8184, allocations: 2.76 MB / 0.995 GB, free: 18.28 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.004692/0.8231, allocations: 2.969 MB / 0.9979 GB, free: 17.86 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00385/0.827, allocations: 1.86 MB / 0.9997 GB, free: 17.21 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.006417/0.8334, allocations: 2.098 MB / 1.002 GB, free: 16.64 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.001761/0.8352, allocations: 425 kB / 1.002 GB, free: 16.64 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.00198/0.8371, allocations: 426.7 kB / 1.003 GB, free: 16.64 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0009533/0.8381, allocations: 0.9162 MB / 1.003 GB, free: 16.12 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.002259/0.8404, allocations: 1.438 MB / 1.005 GB, free: 15.42 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.005587/0.8459, allocations: 3.506 MB / 1.008 GB, free: 14.1 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 4.137e-06/0.8459, allocations: 0.8125 kB / 1.008 GB, free: 14.1 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.764e-06/0.8459, allocations: 0 / 1.008 GB, free: 14.1 MB / 0.698 GB Notification: Performance of Transformations before backend: time 0.0001018/0.846, allocations: 0 / 1.008 GB, free: 14.1 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.01207/0.8581, allocations: 2.84 MB / 1.011 GB, free: 12.46 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 5.426e-05/0.8582, allocations: 15.73 kB / 1.011 GB, free: 12.46 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000884/0.8591, allocations: 230.9 kB / 1.011 GB, free: 12.34 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.002486/0.8615, allocations: 1.13 MB / 1.012 GB, free: 11.67 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000128/0.8617, allocations: 136.5 kB / 1.013 GB, free: 11.61 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005426/0.8622, allocations: 201.8 kB / 1.013 GB, free: 11.54 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.008271/0.8705, allocations: 3.772 MB / 1.016 GB, free: 9.484 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 8.449e-05/0.8706, allocations: 15.88 kB / 1.016 GB, free: 9.473 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003443/0.8709, allocations: 79.58 kB / 1.016 GB, free: 9.414 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.469e-05/0.871, allocations: 41.88 kB / 1.017 GB, free: 9.414 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.008579/0.8795, allocations: 3.644 MB / 1.02 GB, free: 7.449 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02051/0.9001, allocations: 7.693 MB / 1.028 GB, free: 1.98 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.004006/0.9041, allocations: 1.742 MB / 1.029 GB, free: 1.004 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002748/0.9068, allocations: 1.246 MB / 1.031 GB, free: 248 kB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 9.362e-05/0.9069, allocations: 29.23 kB / 1.031 GB, free: 240 kB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.004441/0.9113, allocations: 2.142 MB / 1.033 GB, free: 14.68 MB / 0.7137 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.009414/0.9208, allocations: 1.781 MB / 1.034 GB, free: 14.08 MB / 0.7137 GB Notification: Performance of pre-optimization done (n=198): time 2.195e-05/0.9208, allocations: 1.438 kB / 1.034 GB, free: 14.08 MB / 0.7137 GB Notification: Performance of matching and sorting (n=202): time 0.02976/0.9505, allocations: 7.92 MB / 1.042 GB, free: 9.41 MB / 0.7137 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.000374/0.9509, allocations: 404.3 kB / 1.042 GB, free: 8.961 MB / 0.7137 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002153/0.9531, allocations: 0.9093 MB / 1.043 GB, free: 8.434 MB / 0.7137 GB Notification: Performance of collectPreVariables (initialization): time 0.0005232/0.9536, allocations: 78.14 kB / 1.043 GB, free: 8.367 MB / 0.7137 GB Notification: Performance of collectInitialEqns (initialization): time 0.001032/0.9546, allocations: 0.6984 MB / 1.044 GB, free: 7.746 MB / 0.7137 GB Notification: Performance of collectInitialBindings (initialization): time 0.001647/0.9563, allocations: 0.7226 MB / 1.045 GB, free: 7.117 MB / 0.7137 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.002145/0.9584, allocations: 0.5843 MB / 1.045 GB, free: 6.758 MB / 0.7137 GB Notification: Performance of setup shared object (initialization): time 0.0002113/0.9586, allocations: 302.5 kB / 1.046 GB, free: 6.461 MB / 0.7137 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.004884/0.9635, allocations: 1.558 MB / 1.047 GB, free: 5.426 MB / 0.7137 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.005578/0.9691, allocations: 2.087 MB / 1.049 GB, free: 3.711 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.175/1.144, allocations: 24.77 MB / 1.073 GB, free: 1.594 MB / 0.7293 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.814e-05/1.144, allocations: 9.125 kB / 1.073 GB, free: 1.586 MB / 0.7293 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.01259/1.157, allocations: 4.13 MB / 1.077 GB, free: 13.34 MB / 0.7449 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002716/1.157, allocations: 267.3 kB / 1.078 GB, free: 13.02 MB / 0.7449 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.724e-05/1.157, allocations: 12 kB / 1.078 GB, free: 13.01 MB / 0.7449 GB Notification: Performance of postOpt tearingSystem (initialization): time 8.313e-05/1.157, allocations: 24 kB / 1.078 GB, free: 12.98 MB / 0.7449 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.004655/1.162, allocations: 0.8306 MB / 1.079 GB, free: 12.15 MB / 0.7449 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.124e-05/1.162, allocations: 28.48 kB / 1.079 GB, free: 12.12 MB / 0.7449 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.003325/1.165, allocations: 119.9 kB / 1.079 GB, free: 12.01 MB / 0.7449 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.000887/1.166, allocations: 207.7 kB / 1.079 GB, free: 11.8 MB / 0.7449 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.002297/1.168, allocations: 0.6474 MB / 1.08 GB, free: 11.14 MB / 0.7449 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0008007/1.169, allocations: 155 kB / 1.08 GB, free: 10.99 MB / 0.7449 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.009386/1.179, allocations: 3.566 MB / 1.083 GB, free: 7.355 MB / 0.7449 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.591e-05/1.179, allocations: 16 kB / 1.083 GB, free: 7.34 MB / 0.7449 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 9.759e-06/1.179, allocations: 0 / 1.083 GB, free: 7.34 MB / 0.7449 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.36e-05/1.179, allocations: 7.969 kB / 1.083 GB, free: 7.332 MB / 0.7449 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.01136/1.19, allocations: 4.561 MB / 1.088 GB, free: 2.73 MB / 0.7449 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.428e-06/1.19, allocations: 4 kB / 1.088 GB, free: 2.727 MB / 0.7449 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002906/1.193, allocations: 459.3 kB / 1.088 GB, free: 2.277 MB / 0.7449 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.64e-05/1.193, allocations: 7.938 kB / 1.088 GB, free: 2.27 MB / 0.7449 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0003023/1.193, allocations: 111.8 kB / 1.088 GB, free: 2.16 MB / 0.7449 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.155e-05/1.193, allocations: 4 kB / 1.088 GB, free: 2.156 MB / 0.7449 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.933e-06/1.193, allocations: 7.938 kB / 1.088 GB, free: 2.148 MB / 0.7449 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00989/1.203, allocations: 4.725 MB / 1.093 GB, free: 13.33 MB / 0.7605 GB Notification: Performance of postOpt removeConstants (simulation): time 0.00145/1.205, allocations: 386.6 kB / 1.093 GB, free: 12.95 MB / 0.7605 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0005087/1.205, allocations: 67.89 kB / 1.093 GB, free: 12.89 MB / 0.7605 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001743/1.207, allocations: 87.91 kB / 1.093 GB, free: 12.8 MB / 0.7605 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004505/1.207, allocations: 169.7 kB / 1.094 GB, free: 12.63 MB / 0.7605 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002534/1.208, allocations: 123.8 kB / 1.094 GB, free: 12.51 MB / 0.7605 GB Notification: Performance of sorting global known variables: time 0.001033/1.209, allocations: 0.6468 MB / 1.094 GB, free: 11.86 MB / 0.7605 GB Notification: Performance of sort global known variables: time 6e-08/1.209, allocations: 0 / 1.094 GB, free: 11.86 MB / 0.7605 GB Notification: Performance of remove unused functions: time 0.002692/1.211, allocations: 0.6367 MB / 1.095 GB, free: 11.22 MB / 0.7605 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004005/1.212, allocations: 208.2 kB / 1.095 GB, free: 11 MB / 0.7605 GB Notification: Performance of simCode: created initialization part: time 0.007672/1.219, allocations: 3.647 MB / 1.099 GB, free: 7.168 MB / 0.7605 GB Notification: Performance of simCode: created event and clocks part: time 5.33e-06/1.219, allocations: 4 kB / 1.099 GB, free: 7.164 MB / 0.7605 GB Notification: Performance of simCode: created simulation system equations: time 0.003304/1.223, allocations: 1.589 MB / 1.1 GB, free: 5.504 MB / 0.7605 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002899/1.226, allocations: 491.8 kB / 1.101 GB, free: 5.027 MB / 0.7605 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01269/1.238, allocations: 6.447 MB / 1.107 GB, free: 14.52 MB / 0.7762 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009874/1.239, allocations: 0.7728 MB / 1.108 GB, free: 13.71 MB / 0.7762 GB Notification: Performance of simCode: alias equations: time 0.003103/1.242, allocations: 499.4 kB / 1.108 GB, free: 13.22 MB / 0.7762 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001632/1.244, allocations: 322.9 kB / 1.109 GB, free: 12.91 MB / 0.7762 GB Notification: Performance of SimCode: time 1.944e-06/1.244, allocations: 0 / 1.109 GB, free: 12.91 MB / 0.7762 GB Notification: Performance of Templates: time 0.0789/1.323, allocations: 44.37 MB / 1.152 GB, free: 0.9531 MB / 0.8074 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 11.980464616091922]