Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.005436/0.005436, allocations: 105.5 kB / 18.95 MB, free: 1.184 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.005848/0.005848, allocations: 219.5 kB / 22.25 MB, free: 3.57 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.734/1.734, allocations: 230.6 MB / 256 MB, free: 9.594 MB / 202.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.784/3.784, allocations: 335.2 MB / 0.6325 GB, free: 7.242 MB / 442.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.003821/0.003821, allocations: 71.89 kB / 0.868 GB, free: 5.699 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2528/0.2566, allocations: 112.8 MB / 0.9782 GB, free: 4.617 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.009323/0.266, allocations: 6.03 MB / 0.9841 GB, free: 14.56 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.005985/0.2719, allocations: 1.978 MB / 0.986 GB, free: 12.57 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0007466/0.2727, allocations: 19.94 kB / 0.986 GB, free: 12.55 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0008825/0.2736, allocations: 277.8 kB / 0.9863 GB, free: 12.28 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.001129/0.2747, allocations: 456.4 kB / 0.9867 GB, free: 11.83 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.5357/0.8104, allocations: 0.5171 MB / 0.9872 GB, free: 20.03 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.002531/0.813, allocations: 1.743 MB / 0.9889 GB, free: 20.03 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005705/0.8135, allocations: 257.1 kB / 0.9892 GB, free: 19.99 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0009332/0.8145, allocations: 0.6088 MB / 0.9898 GB, free: 19.91 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0008711/0.8153, allocations: 0.6089 MB / 0.9904 GB, free: 19.76 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0002248/0.8156, allocations: 168.3 kB / 0.9905 GB, free: 19.76 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000568/0.8161, allocations: 316.2 kB / 0.9908 GB, free: 19.76 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0002644/0.8164, allocations: 364 kB / 0.9912 GB, free: 19.7 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0005966/0.817, allocations: 0.6239 MB / 0.9918 GB, free: 19.54 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.002668/0.8197, allocations: 2.145 MB / 0.9939 GB, free: 19.26 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 5.981e-06/0.8197, allocations: 0.8438 kB / 0.9939 GB, free: 19.26 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.603e-06/0.8197, allocations: 3.812 kB / 0.9939 GB, free: 19.26 MB / 0.698 GB Notification: Performance of Transformations before backend: time 5.522e-05/0.8197, allocations: 1.688 kB / 0.9939 GB, free: 19.26 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.003739/0.8235, allocations: 2.226 MB / 0.9961 GB, free: 17.78 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 4.022e-05/0.8235, allocations: 12.14 kB / 0.9961 GB, free: 17.78 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0007783/0.8243, allocations: 248.4 kB / 0.9963 GB, free: 17.69 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001064/0.8253, allocations: 0.7056 MB / 0.997 GB, free: 17.38 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.866e-05/0.8254, allocations: 70.67 kB / 0.9971 GB, free: 17.37 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002145/0.8256, allocations: 113.4 kB / 0.9972 GB, free: 17.37 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003099/0.8287, allocations: 1.993 MB / 0.9991 GB, free: 16.75 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.384e-05/0.8288, allocations: 10.19 kB / 0.9991 GB, free: 16.75 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001097/0.8289, allocations: 41.19 kB / 0.9992 GB, free: 16.75 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.092e-05/0.8289, allocations: 20.88 kB / 0.9992 GB, free: 16.75 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002848/0.8318, allocations: 1.807 MB / 1.001 GB, free: 15.93 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004894/0.8367, allocations: 2.455 MB / 1.003 GB, free: 14.49 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003264/0.8399, allocations: 1.929 MB / 1.005 GB, free: 13.36 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002155/0.8421, allocations: 1.422 MB / 1.007 GB, free: 12.45 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 8.383e-05/0.8422, allocations: 18.06 kB / 1.007 GB, free: 12.45 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003228/0.8454, allocations: 2.289 MB / 1.009 GB, free: 10.89 MB / 0.698 GB Notification: Performance of pre-optimization done (n=157): time 4.128e-06/0.8454, allocations: 0 / 1.009 GB, free: 10.89 MB / 0.698 GB Notification: Performance of matching and sorting (n=165): time 0.01813/0.8635, allocations: 9.289 MB / 1.018 GB, free: 4.996 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.001114/0.8647, allocations: 1.035 MB / 1.019 GB, free: 3.785 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002352/0.867, allocations: 0.9624 MB / 1.02 GB, free: 3.367 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 0.0005422/0.8675, allocations: 77.19 kB / 1.02 GB, free: 3.309 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0006143/0.8682, allocations: 496.5 kB / 1.02 GB, free: 2.922 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0008168/0.869, allocations: 0.5317 MB / 1.021 GB, free: 2.512 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005607/0.8695, allocations: 280.4 kB / 1.021 GB, free: 2.391 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 0.0001635/0.8697, allocations: 301.9 kB / 1.022 GB, free: 2.094 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002782/0.8725, allocations: 1.628 MB / 1.023 GB, free: 1.035 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002843/0.8753, allocations: 2.022 MB / 1.025 GB, free: 15.48 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.01002/0.8854, allocations: 6.587 MB / 1.032 GB, free: 11.08 MB / 0.7137 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.237e-05/0.8854, allocations: 2.812 kB / 1.032 GB, free: 11.08 MB / 0.7137 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.006292/0.8917, allocations: 3.916 MB / 1.035 GB, free: 8.699 MB / 0.7137 GB Notification: Performance of prepare postOptimizeDAE: time 0.0004755/0.8921, allocations: 0.5658 MB / 1.036 GB, free: 8.055 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.672e-05/0.8922, allocations: 10 kB / 1.036 GB, free: 8.055 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.771e-05/0.8922, allocations: 17.34 kB / 1.036 GB, free: 8.055 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001246/0.8935, allocations: 329.3 kB / 1.036 GB, free: 8.012 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.612e-05/0.8935, allocations: 22.92 kB / 1.036 GB, free: 8.008 MB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001228/0.8947, allocations: 86.92 kB / 1.036 GB, free: 7.984 MB / 0.7137 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003883/0.8951, allocations: 249.8 kB / 1.037 GB, free: 7.957 MB / 0.7137 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.00191/0.897, allocations: 1.097 MB / 1.038 GB, free: 7.047 MB / 0.7137 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0005347/0.8976, allocations: 168.8 kB / 1.038 GB, free: 6.969 MB / 0.7137 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003911/0.8979, allocations: 143.6 kB / 1.038 GB, free: 6.879 MB / 0.7137 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.485e-05/0.898, allocations: 14.12 kB / 1.038 GB, free: 6.879 MB / 0.7137 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.908e-05/0.898, allocations: 2.109 kB / 1.038 GB, free: 6.879 MB / 0.7137 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.029e-05/0.898, allocations: 7.359 kB / 1.038 GB, free: 6.879 MB / 0.7137 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.008372/0.9064, allocations: 5.056 MB / 1.043 GB, free: 3.945 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.878e-06/0.9064, allocations: 1.375 kB / 1.043 GB, free: 3.945 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001503/0.9079, allocations: 244.8 kB / 1.043 GB, free: 3.922 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.26e-05/0.9079, allocations: 6.594 kB / 1.043 GB, free: 3.922 MB / 0.7137 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001707/0.9081, allocations: 62.03 kB / 1.043 GB, free: 3.898 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.348e-06/0.9081, allocations: 4.812 kB / 1.043 GB, free: 3.898 MB / 0.7137 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.095e-06/0.9081, allocations: 10.41 kB / 1.043 GB, free: 3.891 MB / 0.7137 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.008208/0.9163, allocations: 5.843 MB / 1.049 GB, free: 288 kB / 0.7137 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001065/0.9174, allocations: 326.1 kB / 1.049 GB, free: 40 kB / 0.7137 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003589/0.9177, allocations: 72.73 kB / 1.049 GB, free: 0 / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0008939/0.9186, allocations: 77.25 kB / 1.049 GB, free: 15.96 MB / 0.7293 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004006/0.919, allocations: 162.6 kB / 1.05 GB, free: 15.86 MB / 0.7293 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0003438/0.9194, allocations: 225.9 kB / 1.05 GB, free: 15.77 MB / 0.7293 GB Notification: Performance of sorting global known variables: time 0.001215/0.9206, allocations: 0.6761 MB / 1.05 GB, free: 15.36 MB / 0.7293 GB Notification: Performance of sort global known variables: time 9e-08/0.9206, allocations: 0 / 1.05 GB, free: 15.36 MB / 0.7293 GB Notification: Performance of remove unused functions: time 0.001603/0.9222, allocations: 383.1 kB / 1.051 GB, free: 15.32 MB / 0.7293 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0005367/0.9227, allocations: 287.8 kB / 1.051 GB, free: 15.14 MB / 0.7293 GB Notification: Performance of simCode: created initialization part: time 0.006465/0.9292, allocations: 4.492 MB / 1.055 GB, free: 11.55 MB / 0.7293 GB Notification: Performance of simCode: created event and clocks part: time 6.432e-06/0.9292, allocations: 0 / 1.055 GB, free: 11.55 MB / 0.7293 GB Notification: Performance of simCode: created simulation system equations: time 0.004518/0.9337, allocations: 2.58 MB / 1.058 GB, free: 9.379 MB / 0.7293 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.003096/0.9368, allocations: 373.9 kB / 1.058 GB, free: 9.203 MB / 0.7293 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01252/0.9493, allocations: 5.131 MB / 1.063 GB, free: 5.57 MB / 0.7293 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001176/0.9505, allocations: 0.6582 MB / 1.064 GB, free: 5.191 MB / 0.7293 GB Notification: Performance of simCode: alias equations: time 0.001073/0.9516, allocations: 119.2 kB / 1.064 GB, free: 5.133 MB / 0.7293 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003139/0.9519, allocations: 80.47 kB / 1.064 GB, free: 5.121 MB / 0.7293 GB Notification: Performance of SimCode: time 1.323e-06/0.9519, allocations: 3.938 kB / 1.064 GB, free: 5.117 MB / 0.7293 GB Notification: Performance of Templates: time 0.06266/1.015, allocations: 24.85 MB / 1.088 GB, free: 15.05 MB / 0.7605 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 12.063402717001736]