Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001896/0.001896, allocations: 105.5 kB / 18.95 MB, free: 1.176 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002121/0.002121, allocations: 214.2 kB / 22.25 MB, free: 3.566 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.752/1.752, allocations: 230.6 MB / 256 MB, free: 9.594 MB / 202.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.885/3.885, allocations: 335.3 MB / 0.6325 GB, free: 7.215 MB / 442.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.003808/0.003808, allocations: 67.89 kB / 0.868 GB, free: 5.891 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2279/0.2317, allocations: 112.8 MB / 0.9782 GB, free: 4.812 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.009552/0.2412, allocations: 6.209 MB / 0.9842 GB, free: 14.57 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.002832/0.2441, allocations: 1.283 MB / 0.9855 GB, free: 13.29 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002601/0.2443, allocations: 12 kB / 0.9855 GB, free: 13.28 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0002844/0.2446, allocations: 110.8 kB / 0.9856 GB, free: 13.17 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0007241/0.2453, allocations: 325.4 kB / 0.9859 GB, free: 12.85 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006586/0.246, allocations: 283.6 kB / 0.9862 GB, free: 12.57 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001383/0.2474, allocations: 1.175 MB / 0.9873 GB, free: 11.39 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.4135/0.6609, allocations: 171.5 kB / 0.9875 GB, free: 20.2 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0008853/0.6617, allocations: 422.2 kB / 0.9879 GB, free: 20.2 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006408/0.6624, allocations: 407.2 kB / 0.9883 GB, free: 20.11 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0001544/0.6625, allocations: 112.5 kB / 0.9884 GB, free: 20.11 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001805/0.6627, allocations: 111.9 kB / 0.9885 GB, free: 20.11 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.000143/0.6629, allocations: 192.2 kB / 0.9887 GB, free: 20.07 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0003739/0.6632, allocations: 415.5 kB / 0.9891 GB, free: 19.98 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.0009435/0.6642, allocations: 1.153 MB / 0.9902 GB, free: 19.82 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 3.967e-06/0.6642, allocations: 0 / 0.9902 GB, free: 19.82 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.563e-06/0.6642, allocations: 4.469 kB / 0.9902 GB, free: 19.82 MB / 0.698 GB Notification: Performance of Transformations before backend: time 1.304e-05/0.6642, allocations: 0 / 0.9902 GB, free: 19.82 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001896/0.6661, allocations: 1.335 MB / 0.9915 GB, free: 18.96 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.583e-05/0.6661, allocations: 12.77 kB / 0.9915 GB, free: 18.96 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001345/0.6663, allocations: 92.06 kB / 0.9916 GB, free: 18.91 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005945/0.6669, allocations: 461.3 kB / 0.9921 GB, free: 18.69 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.127e-05/0.6669, allocations: 44.25 kB / 0.9921 GB, free: 18.69 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001126/0.667, allocations: 75.09 kB / 0.9922 GB, free: 18.69 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001272/0.6683, allocations: 0.849 MB / 0.993 GB, free: 18.4 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.703e-05/0.6683, allocations: 13.47 kB / 0.993 GB, free: 18.39 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.988e-05/0.6684, allocations: 26.95 kB / 0.993 GB, free: 18.39 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.269e-05/0.6684, allocations: 16.16 kB / 0.9931 GB, free: 18.39 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001291/0.6697, allocations: 0.7436 MB / 0.9938 GB, free: 18.2 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002389/0.6721, allocations: 1.749 MB / 0.9955 GB, free: 17.5 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001473/0.6735, allocations: 0.8012 MB / 0.9963 GB, free: 17.25 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006398/0.6742, allocations: 488.9 kB / 0.9967 GB, free: 17.04 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 4.219e-05/0.6742, allocations: 13.62 kB / 0.9967 GB, free: 17.04 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001168/0.6754, allocations: 1.102 MB / 0.9978 GB, free: 16.38 MB / 0.698 GB Notification: Performance of pre-optimization done (n=99): time 3.316e-06/0.6754, allocations: 0.7031 kB / 0.9978 GB, free: 16.38 MB / 0.698 GB Notification: Performance of matching and sorting (n=105): time 0.005441/0.6808, allocations: 3.543 MB / 1.001 GB, free: 14.71 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001351/0.681, allocations: 0.5962 MB / 1.002 GB, free: 14.02 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006488/0.6816, allocations: 0.5338 MB / 1.002 GB, free: 13.89 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 7.366e-05/0.6817, allocations: 62.36 kB / 1.002 GB, free: 13.86 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001761/0.6819, allocations: 300.3 kB / 1.003 GB, free: 13.71 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002072/0.6821, allocations: 351.9 kB / 1.003 GB, free: 13.5 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002926/0.6824, allocations: 190.1 kB / 1.003 GB, free: 13.45 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 0.0001164/0.6825, allocations: 398.3 kB / 1.004 GB, free: 13.11 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009162/0.6834, allocations: 0.6362 MB / 1.004 GB, free: 12.65 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.00105/0.6845, allocations: 0.9603 MB / 1.005 GB, free: 11.8 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.004487/0.6889, allocations: 2.497 MB / 1.008 GB, free: 9.898 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.523e-05/0.689, allocations: 7.562 kB / 1.008 GB, free: 9.895 MB / 0.698 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.003461/0.6924, allocations: 1.736 MB / 1.009 GB, free: 8.844 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002784/0.6927, allocations: 267.8 kB / 1.01 GB, free: 8.551 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.298e-05/0.6927, allocations: 8.531 kB / 1.01 GB, free: 8.551 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 6.127e-05/0.6928, allocations: 15.12 kB / 1.01 GB, free: 8.551 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001154/0.6939, allocations: 244.5 kB / 1.01 GB, free: 8.535 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.875e-05/0.694, allocations: 20.55 kB / 1.01 GB, free: 8.535 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009711/0.695, allocations: 61.89 kB / 1.01 GB, free: 8.52 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001444/0.6951, allocations: 51.86 kB / 1.01 GB, free: 8.508 MB / 0.698 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001219/0.6963, allocations: 0.5745 MB / 1.011 GB, free: 8.066 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002506/0.6966, allocations: 100.4 kB / 1.011 GB, free: 8.012 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002374/0.6968, allocations: 79.47 kB / 1.011 GB, free: 7.957 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.328e-05/0.6968, allocations: 10.97 kB / 1.011 GB, free: 7.957 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.657e-05/0.6969, allocations: 1.094 kB / 1.011 GB, free: 7.957 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.124e-05/0.6969, allocations: 5.266 kB / 1.011 GB, free: 7.957 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004709/0.7016, allocations: 2.312 MB / 1.013 GB, free: 6.559 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.29e-06/0.7016, allocations: 5.312 kB / 1.013 GB, free: 6.555 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008706/0.7025, allocations: 166.9 kB / 1.013 GB, free: 6.551 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.083e-05/0.7025, allocations: 8 kB / 1.013 GB, free: 6.547 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.95e-05/0.7026, allocations: 41.19 kB / 1.013 GB, free: 6.527 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.235e-06/0.7026, allocations: 3.75 kB / 1.013 GB, free: 6.527 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.364e-06/0.7026, allocations: 0.875 kB / 1.013 GB, free: 6.527 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004189/0.7068, allocations: 2.251 MB / 1.015 GB, free: 5.086 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005462/0.7073, allocations: 163.7 kB / 1.016 GB, free: 4.988 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001918/0.7075, allocations: 46.27 kB / 1.016 GB, free: 4.965 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006072/0.7081, allocations: 51.64 kB / 1.016 GB, free: 4.953 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002844/0.7084, allocations: 113.8 kB / 1.016 GB, free: 4.918 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.623e-05/0.7085, allocations: 37.5 kB / 1.016 GB, free: 4.91 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.0005993/0.7091, allocations: 368.2 kB / 1.016 GB, free: 4.738 MB / 0.698 GB Notification: Performance of sort global known variables: time 8e-08/0.7091, allocations: 0 / 1.016 GB, free: 4.738 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.001103/0.7102, allocations: 245.9 kB / 1.016 GB, free: 4.711 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002873/0.7105, allocations: 192.2 kB / 1.017 GB, free: 4.582 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.003104/0.7136, allocations: 1.834 MB / 1.018 GB, free: 3.223 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 2.855e-06/0.7136, allocations: 0 / 1.018 GB, free: 3.223 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.001545/0.7151, allocations: 0.9635 MB / 1.019 GB, free: 2.488 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001502/0.7166, allocations: 271.8 kB / 1.02 GB, free: 2.398 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005531/0.7222, allocations: 2.79 MB / 1.022 GB, free: 496 kB / 0.698 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004415/0.7226, allocations: 365.6 kB / 1.023 GB, free: 380 kB / 0.698 GB Notification: Performance of simCode: alias equations: time 0.000546/0.7232, allocations: 96.08 kB / 1.023 GB, free: 352 kB / 0.698 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001781/0.7233, allocations: 70.83 kB / 1.023 GB, free: 340 kB / 0.698 GB Notification: Performance of SimCode: time 9.51e-07/0.7233, allocations: 0 / 1.023 GB, free: 340 kB / 0.698 GB Notification: Performance of Templates: time 0.02758/0.7509, allocations: 15.32 MB / 1.038 GB, free: 11.29 MB / 0.7137 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 10.821866430109367]