Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002291/0.002291, allocations: 105.5 kB / 18.95 MB, free: 1.18 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002844/0.002844, allocations: 218.8 kB / 22.25 MB, free: 3.586 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.754/1.754, allocations: 230.6 MB / 256 MB, free: 9.598 MB / 202.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.834/3.834, allocations: 335.3 MB / 0.6325 GB, free: 7.262 MB / 442.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.003859/0.003859, allocations: 77.3 kB / 0.868 GB, free: 5.828 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2274/0.2312, allocations: 112.8 MB / 0.9782 GB, free: 4.75 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.4269/0.6582, allocations: 9.842 MB / 0.9878 GB, free: 20.33 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.003775/0.6619, allocations: 2.239 MB / 0.99 GB, free: 20.29 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0004747/0.6624, allocations: 17.38 kB / 0.99 GB, free: 20.29 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0003672/0.6628, allocations: 227.6 kB / 0.9902 GB, free: 20.21 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0009756/0.6638, allocations: 0.6628 MB / 0.9909 GB, free: 19.93 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008393/0.6646, allocations: 0.6119 MB / 0.9915 GB, free: 19.92 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001851/0.6665, allocations: 2.591 MB / 0.994 GB, free: 19.38 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005283/0.667, allocations: 361.4 kB / 0.9943 GB, free: 19.29 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.000784/0.6678, allocations: 0.8774 MB / 0.9952 GB, free: 19.13 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0009811/0.6687, allocations: 0.8346 MB / 0.996 GB, free: 18.93 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0002725/0.669, allocations: 278.3 kB / 0.9963 GB, free: 18.93 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003317/0.6694, allocations: 282.4 kB / 0.9965 GB, free: 18.93 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0002467/0.6696, allocations: 435.7 kB / 0.997 GB, free: 18.68 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0006631/0.6703, allocations: 0.8774 MB / 0.9978 GB, free: 18.18 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.002433/0.6727, allocations: 2.826 MB / 1.001 GB, free: 17.01 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 4.469e-06/0.6727, allocations: 5.25 kB / 1.001 GB, free: 17 MB / 0.698 GB Notification: Performance of FrontEnd: time 2.825e-06/0.6727, allocations: 0.75 kB / 1.001 GB, free: 17 MB / 0.698 GB Notification: Performance of Transformations before backend: time 4.149e-05/0.6727, allocations: 0 / 1.001 GB, free: 17 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.003918/0.6767, allocations: 2.493 MB / 1.003 GB, free: 15.18 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.965e-05/0.6767, allocations: 15.45 kB / 1.003 GB, free: 15.18 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002886/0.677, allocations: 192.2 kB / 1.003 GB, free: 15.08 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001263/0.6783, allocations: 0.8673 MB / 1.004 GB, free: 14.46 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.368e-05/0.6783, allocations: 98.36 kB / 1.004 GB, free: 14.41 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002808/0.6786, allocations: 141.9 kB / 1.004 GB, free: 14.37 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003068/0.6817, allocations: 1.759 MB / 1.006 GB, free: 13.31 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.127e-05/0.6817, allocations: 20.67 kB / 1.006 GB, free: 13.3 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001228/0.6819, allocations: 52.16 kB / 1.006 GB, free: 13.26 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.615e-05/0.6819, allocations: 26.59 kB / 1.006 GB, free: 13.26 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002965/0.6849, allocations: 1.595 MB / 1.008 GB, free: 12.44 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006131/0.691, allocations: 3.904 MB / 1.011 GB, free: 9.816 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.00375/0.6947, allocations: 1.731 MB / 1.013 GB, free: 8.801 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.00183/0.6966, allocations: 1.007 MB / 1.014 GB, free: 8.105 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 8.452e-05/0.6967, allocations: 28.48 kB / 1.014 GB, free: 8.098 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003704/0.7004, allocations: 2.268 MB / 1.016 GB, free: 6.445 MB / 0.698 GB Notification: Performance of pre-optimization done (n=198): time 4.608e-06/0.7004, allocations: 0 / 1.016 GB, free: 6.445 MB / 0.698 GB Notification: Performance of matching and sorting (n=210): time 0.01649/0.7169, allocations: 7.856 MB / 1.024 GB, free: 1.109 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0008466/0.7177, allocations: 1.168 MB / 1.025 GB, free: 15.74 MB / 0.7137 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001711/0.7194, allocations: 1.03 MB / 1.026 GB, free: 15.27 MB / 0.7137 GB Notification: Performance of collectPreVariables (initialization): time 0.0001963/0.7196, allocations: 101.2 kB / 1.026 GB, free: 15.2 MB / 0.7137 GB Notification: Performance of collectInitialEqns (initialization): time 0.0005772/0.7202, allocations: 0.532 MB / 1.027 GB, free: 14.77 MB / 0.7137 GB Notification: Performance of collectInitialBindings (initialization): time 0.0007488/0.7209, allocations: 0.6926 MB / 1.027 GB, free: 14.24 MB / 0.7137 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000767/0.7217, allocations: 365.6 kB / 1.028 GB, free: 14.08 MB / 0.7137 GB Notification: Performance of setup shared object (initialization): time 0.0001511/0.7219, allocations: 301.1 kB / 1.028 GB, free: 13.79 MB / 0.7137 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002216/0.7241, allocations: 1.347 MB / 1.029 GB, free: 12.84 MB / 0.7137 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.00288/0.727, allocations: 2.006 MB / 1.031 GB, free: 11.04 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.009297/0.7363, allocations: 5.242 MB / 1.037 GB, free: 7.008 MB / 0.7137 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.569e-05/0.7363, allocations: 4.406 kB / 1.037 GB, free: 7.008 MB / 0.7137 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.006329/0.7426, allocations: 3.628 MB / 1.04 GB, free: 4.727 MB / 0.7137 GB Notification: Performance of prepare postOptimizeDAE: time 0.00039/0.743, allocations: 0.5171 MB / 1.041 GB, free: 4.145 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.647e-05/0.743, allocations: 19.5 kB / 1.041 GB, free: 4.141 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.527e-05/0.7431, allocations: 26.81 kB / 1.041 GB, free: 4.141 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001721/0.7448, allocations: 478.6 kB / 1.041 GB, free: 4.09 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.638e-05/0.7448, allocations: 37.3 kB / 1.041 GB, free: 4.082 MB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001655/0.7465, allocations: 135.1 kB / 1.041 GB, free: 4.039 MB / 0.7137 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001765/0.7467, allocations: 99.61 kB / 1.041 GB, free: 4.02 MB / 0.7137 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.00178/0.7484, allocations: 1.134 MB / 1.042 GB, free: 3.141 MB / 0.7137 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003277/0.7488, allocations: 170.3 kB / 1.043 GB, free: 3.059 MB / 0.7137 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0004129/0.7492, allocations: 164.2 kB / 1.043 GB, free: 2.945 MB / 0.7137 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.491e-05/0.7492, allocations: 22.34 kB / 1.043 GB, free: 2.941 MB / 0.7137 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.88e-05/0.7492, allocations: 1.469 kB / 1.043 GB, free: 2.941 MB / 0.7137 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.337e-05/0.7493, allocations: 13.8 kB / 1.043 GB, free: 2.938 MB / 0.7137 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.009013/0.7583, allocations: 4.974 MB / 1.048 GB, free: 15.63 MB / 0.7293 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.714e-06/0.7583, allocations: 1.5 kB / 1.048 GB, free: 15.63 MB / 0.7293 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001625/0.7599, allocations: 337.7 kB / 1.048 GB, free: 15.55 MB / 0.7293 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.144e-05/0.7599, allocations: 11 kB / 1.048 GB, free: 15.54 MB / 0.7293 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001725/0.7601, allocations: 76.23 kB / 1.048 GB, free: 15.5 MB / 0.7293 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.325e-05/0.7601, allocations: 11.09 kB / 1.048 GB, free: 15.5 MB / 0.7293 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.575e-06/0.7601, allocations: 1.281 kB / 1.048 GB, free: 15.5 MB / 0.7293 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007358/0.7675, allocations: 4.668 MB / 1.053 GB, free: 12.22 MB / 0.7293 GB Notification: Performance of postOpt removeConstants (simulation): time 0.001061/0.7685, allocations: 387.3 kB / 1.053 GB, free: 11.91 MB / 0.7293 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003875/0.7689, allocations: 102.2 kB / 1.053 GB, free: 11.86 MB / 0.7293 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001116/0.77, allocations: 100.6 kB / 1.053 GB, free: 11.81 MB / 0.7293 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0004884/0.7705, allocations: 224.2 kB / 1.053 GB, free: 11.67 MB / 0.7293 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001399/0.7707, allocations: 79.17 kB / 1.053 GB, free: 11.64 MB / 0.7293 GB Notification: Performance of sorting global known variables: time 0.001076/0.7717, allocations: 0.6832 MB / 1.054 GB, free: 11.24 MB / 0.7293 GB Notification: Performance of sort global known variables: time 8e-08/0.7717, allocations: 0 / 1.054 GB, free: 11.24 MB / 0.7293 GB Notification: Performance of remove unused functions: time 0.001839/0.7736, allocations: 494.6 kB / 1.055 GB, free: 11.18 MB / 0.7293 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004354/0.774, allocations: 320.8 kB / 1.055 GB, free: 10.95 MB / 0.7293 GB Notification: Performance of simCode: created initialization part: time 0.006032/0.78, allocations: 3.828 MB / 1.059 GB, free: 7.828 MB / 0.7293 GB Notification: Performance of simCode: created event and clocks part: time 3.677e-06/0.78, allocations: 2.281 kB / 1.059 GB, free: 7.828 MB / 0.7293 GB Notification: Performance of simCode: created simulation system equations: time 0.003284/0.7833, allocations: 2.122 MB / 1.061 GB, free: 6.074 MB / 0.7293 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002937/0.7863, allocations: 0.5406 MB / 1.061 GB, free: 5.82 MB / 0.7293 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00972/0.796, allocations: 5.564 MB / 1.067 GB, free: 1.688 MB / 0.7293 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008708/0.7969, allocations: 0.6618 MB / 1.067 GB, free: 1.34 MB / 0.7293 GB Notification: Performance of simCode: alias equations: time 0.001162/0.798, allocations: 184.1 kB / 1.068 GB, free: 1.25 MB / 0.7293 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003554/0.7984, allocations: 128.3 kB / 1.068 GB, free: 1.227 MB / 0.7293 GB Notification: Performance of SimCode: time 9.82e-07/0.7984, allocations: 1.25 kB / 1.068 GB, free: 1.227 MB / 0.7293 GB Notification: Performance of Templates: time 0.05596/0.8543, allocations: 32.76 MB / 1.1 GB, free: 4.691 MB / 0.7605 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 11.183480047155172]