Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002275/0.002275, allocations: 109.5 kB / 18.95 MB, free: 1.18 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002659/0.002659, allocations: 220.6 kB / 22.25 MB, free: 3.582 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.733/1.733, allocations: 230.6 MB / 256 MB, free: 9.609 MB / 202.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.83/3.83, allocations: 335.3 MB / 0.6325 GB, free: 7.301 MB / 442.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.005915/0.005915, allocations: 63.89 kB / 0.8682 GB, free: 5.754 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.296/0.3019, allocations: 112.8 MB / 0.9783 GB, free: 4.668 MB / 0.6824 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.007111/0.309, allocations: 5.099 MB / 0.9833 GB, free: 15.54 MB / 0.698 GB
Notification: Performance of NFInst.instExpressions: time 0.002447/0.3114, allocations: 1.294 MB / 0.9846 GB, free: 14.25 MB / 0.698 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002577/0.3117, allocations: 11.94 kB / 0.9846 GB, free: 14.23 MB / 0.698 GB
Notification: Performance of NFTyping.typeComponents: time 0.0003118/0.312, allocations: 130.7 kB / 0.9847 GB, free: 14.11 MB / 0.698 GB
Notification: Performance of NFTyping.typeBindings: time 0.00068/0.3127, allocations: 349.1 kB / 0.985 GB, free: 13.76 MB / 0.698 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0005205/0.3132, allocations: 259.7 kB / 0.9853 GB, free: 13.51 MB / 0.698 GB
Notification: Performance of NFFlatten.flatten: time 0.00137/0.3146, allocations: 1.229 MB / 0.9865 GB, free: 12.27 MB / 0.698 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003824/0.315, allocations: 207.5 kB / 0.9867 GB, free: 12.06 MB / 0.698 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0005139/0.3155, allocations: 446.5 kB / 0.9871 GB, free: 11.62 MB / 0.698 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.3978/0.7133, allocations: 425.1 kB / 0.9875 GB, free: 20.38 MB / 0.698 GB
Notification: Performance of NFPackage.collectConstants: time 0.0002963/0.7136, allocations: 108.2 kB / 0.9876 GB, free: 20.38 MB / 0.698 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0002532/0.7138, allocations: 109.6 kB / 0.9877 GB, free: 20.38 MB / 0.698 GB
Notification: Performance of NFScalarize.scalarize: time 0.0001249/0.714, allocations: 200.8 kB / 0.9879 GB, free: 20.38 MB / 0.698 GB
Notification: Performance of NFVerifyModel.verify: time 0.0003848/0.7143, allocations: 448.1 kB / 0.9883 GB, free: 20.38 MB / 0.698 GB
Notification: Performance of NFConvertDAE.convert: time 0.0009438/0.7153, allocations: 1.149 MB / 0.9895 GB, free: 20.25 MB / 0.698 GB
Notification: Performance of FrontEnd - DAE generated: time 3.737e-06/0.7153, allocations: 0 / 0.9895 GB, free: 20.25 MB / 0.698 GB
Notification: Performance of FrontEnd: time 1.423e-06/0.7153, allocations: 0 / 0.9895 GB, free: 20.25 MB / 0.698 GB
Notification: Performance of Transformations before backend: time 1.401e-05/0.7153, allocations: 4.094 kB / 0.9895 GB, free: 20.25 MB / 0.698 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 165
 * Number of variables: 165
Notification: Performance of Generate backend data structure: time 0.001914/0.7172, allocations: 1.391 MB / 0.9908 GB, free: 19.36 MB / 0.698 GB
Notification: Performance of prepare preOptimizeDAE: time 3.164e-05/0.7173, allocations: 9.172 kB / 0.9908 GB, free: 19.36 MB / 0.698 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001386/0.7174, allocations: 105.4 kB / 0.9909 GB, free: 19.31 MB / 0.698 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005493/0.7179, allocations: 450 kB / 0.9914 GB, free: 19.09 MB / 0.698 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.61e-05/0.718, allocations: 50.22 kB / 0.9914 GB, free: 19.09 MB / 0.698 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001181/0.7181, allocations: 84.42 kB / 0.9915 GB, free: 19.09 MB / 0.698 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001344/0.7194, allocations: 0.8946 MB / 0.9924 GB, free: 18.81 MB / 0.698 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.947e-05/0.7195, allocations: 11.14 kB / 0.9924 GB, free: 18.8 MB / 0.698 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.83e-05/0.7195, allocations: 28.56 kB / 0.9924 GB, free: 18.8 MB / 0.698 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.21e-05/0.7195, allocations: 18.53 kB / 0.9924 GB, free: 18.8 MB / 0.698 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001269/0.7208, allocations: 0.7723 MB / 0.9932 GB, free: 18.61 MB / 0.698 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002957/0.7238, allocations: 1.925 MB / 0.9951 GB, free: 18.03 MB / 0.698 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001139/0.7249, allocations: 0.7203 MB / 0.9958 GB, free: 17.81 MB / 0.698 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0006462/0.7256, allocations: 488.8 kB / 0.9962 GB, free: 17.61 MB / 0.698 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.543e-05/0.7256, allocations: 7.969 kB / 0.9962 GB, free: 17.61 MB / 0.698 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001061/0.7267, allocations: 1.031 MB / 0.9972 GB, free: 16.98 MB / 0.698 GB
Notification: Performance of pre-optimization done (n=99): time 2.855e-06/0.7267, allocations: 0 / 0.9972 GB, free: 16.98 MB / 0.698 GB
Notification: Performance of matching and sorting (n=105): time 0.004968/0.7316, allocations: 3.214 MB / 1 GB, free: 15.66 MB / 0.698 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001171/0.7317, allocations: 0.5439 MB / 1.001 GB, free: 15.04 MB / 0.698 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005941/0.7323, allocations: 0.5212 MB / 1.001 GB, free: 14.88 MB / 0.698 GB
Notification: Performance of collectPreVariables (initialization): time 6.84e-05/0.7324, allocations: 61.34 kB / 1.001 GB, free: 14.83 MB / 0.698 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001908/0.7326, allocations: 331.7 kB / 1.002 GB, free: 14.57 MB / 0.698 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001948/0.7328, allocations: 350.5 kB / 1.002 GB, free: 14.3 MB / 0.698 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002656/0.7331, allocations: 178.9 kB / 1.002 GB, free: 14.22 MB / 0.698 GB
Notification: Performance of setup shared object (initialization): time 0.0001111/0.7332, allocations: 393.6 kB / 1.003 GB, free: 13.87 MB / 0.698 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0008375/0.734, allocations: 0.6341 MB / 1.003 GB, free: 13.43 MB / 0.698 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009827/0.735, allocations: 0.9363 MB / 1.004 GB, free: 12.6 MB / 0.698 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.003988/0.739, allocations: 2.464 MB / 1.007 GB, free: 10.75 MB / 0.698 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.082e-05/0.739, allocations: 2.312 kB / 1.007 GB, free: 10.75 MB / 0.698 GB
Notification: Performance of matching and sorting (n=157) (initialization): time 0.003011/0.742, allocations: 1.718 MB / 1.008 GB, free: 9.715 MB / 0.698 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002064/0.7422, allocations: 260.5 kB / 1.009 GB, free: 9.43 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.679e-05/0.7422, allocations: 8.469 kB / 1.009 GB, free: 9.43 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (initialization): time 3.214e-05/0.7423, allocations: 12.84 kB / 1.009 GB, free: 9.43 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009798/0.7432, allocations: 241.1 kB / 1.009 GB, free: 9.418 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.062e-05/0.7433, allocations: 22 kB / 1.009 GB, free: 9.414 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0007288/0.744, allocations: 64.77 kB / 1.009 GB, free: 9.395 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001085/0.7441, allocations: 50.22 kB / 1.009 GB, free: 9.383 MB / 0.698 GB
Warning: Assuming fixed start value for the following 30 variables:
         remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_441524.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         GS_704277.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         remdesivir.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 32
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (148):
 * Single equations (assignments): 139
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0009426/0.745, allocations: 0.5549 MB / 1.009 GB, free: 8.953 MB / 0.698 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001598/0.7452, allocations: 90.48 kB / 1.01 GB, free: 8.906 MB / 0.698 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002602/0.7455, allocations: 81.22 kB / 1.01 GB, free: 8.844 MB / 0.698 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.092e-05/0.7455, allocations: 8.781 kB / 1.01 GB, free: 8.844 MB / 0.698 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.319e-05/0.7455, allocations: 4.594 kB / 1.01 GB, free: 8.84 MB / 0.698 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.569e-05/0.7455, allocations: 8.75 kB / 1.01 GB, free: 8.836 MB / 0.698 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003818/0.7493, allocations: 2.129 MB / 1.012 GB, free: 7.617 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.54e-05/0.7494, allocations: 6.891 kB / 1.012 GB, free: 7.613 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001143/0.7505, allocations: 169.1 kB / 1.012 GB, free: 7.605 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (simulation): time 7.955e-06/0.7505, allocations: 7 kB / 1.012 GB, free: 7.602 MB / 0.698 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.102e-05/0.7506, allocations: 39.25 kB / 1.012 GB, free: 7.586 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.883e-06/0.7506, allocations: 2.969 kB / 1.012 GB, free: 7.586 MB / 0.698 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.433e-06/0.7506, allocations: 1.062 kB / 1.012 GB, free: 7.586 MB / 0.698 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003732/0.7543, allocations: 2.088 MB / 1.014 GB, free: 6.309 MB / 0.698 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001808/0.7545, allocations: 70.55 kB / 1.014 GB, free: 6.262 MB / 0.698 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001796/0.7547, allocations: 41.5 kB / 1.014 GB, free: 6.242 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005108/0.7552, allocations: 52 kB / 1.014 GB, free: 6.23 MB / 0.698 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002538/0.7555, allocations: 94.8 kB / 1.014 GB, free: 6.207 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.804e-05/0.7555, allocations: 31.8 kB / 1.014 GB, free: 6.203 MB / 0.698 GB
Notification: Performance of sorting global known variables: time 0.0005595/0.7561, allocations: 357.7 kB / 1.015 GB, free: 6.031 MB / 0.698 GB
Notification: Performance of sort global known variables: time 1e-07/0.7561, allocations: 4.531 kB / 1.015 GB, free: 6.027 MB / 0.698 GB
Notification: Performance of remove unused functions: time 0.0009443/0.757, allocations: 260 kB / 1.015 GB, free: 5.996 MB / 0.698 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC)
 * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising)
 * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (87):
 * Single equations (assignments): 75
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003379/0.7574, allocations: 191.5 kB / 1.015 GB, free: 5.879 MB / 0.698 GB
Notification: Performance of simCode: created initialization part: time 0.003408/0.7608, allocations: 1.806 MB / 1.017 GB, free: 4.531 MB / 0.698 GB
Notification: Performance of simCode: created event and clocks part: time 3.747e-06/0.7608, allocations: 1.156 kB / 1.017 GB, free: 4.531 MB / 0.698 GB
Notification: Performance of simCode: created simulation system equations: time 0.001437/0.7622, allocations: 0.9485 MB / 1.018 GB, free: 3.809 MB / 0.698 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001312/0.7635, allocations: 248.6 kB / 1.018 GB, free: 3.73 MB / 0.698 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005762/0.7693, allocations: 2.824 MB / 1.021 GB, free: 1.812 MB / 0.698 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0007008/0.77, allocations: 377.1 kB / 1.021 GB, free: 1.703 MB / 0.698 GB
Notification: Performance of simCode: alias equations: time 0.0005194/0.7705, allocations: 88.73 kB / 1.021 GB, free: 1.684 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002142/0.7707, allocations: 59.45 kB / 1.021 GB, free: 1.676 MB / 0.698 GB
Notification: Performance of SimCode: time 9.52e-07/0.7707, allocations: 0 / 1.021 GB, free: 1.676 MB / 0.698 GB
Notification: Performance of Templates: time 0.02716/0.7979, allocations: 14.8 MB / 1.036 GB, free: 12.93 MB / 0.7137 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 12.450340156909078]