Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002478/0.002478, allocations: 109.5 kB / 18.95 MB, free: 1.18 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002973/0.002973, allocations: 220.6 kB / 22.25 MB, free: 3.582 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.778/1.778, allocations: 230.6 MB / 256 MB, free: 9.574 MB / 202.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.902/3.902, allocations: 335.3 MB / 0.6325 GB, free: 7.25 MB / 442.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.003931/0.003931, allocations: 67.91 kB / 0.868 GB, free: 5.781 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2326/0.2365, allocations: 112.8 MB / 0.9782 GB, free: 4.707 MB / 0.6824 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.002929/0.2395, allocations: 1.26 MB / 0.9794 GB, free: 3.438 MB / 0.6824 GB
Notification: Performance of NFInst.instExpressions: time 0.0002944/0.2398, allocations: 55.78 kB / 0.9795 GB, free: 3.383 MB / 0.6824 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.744e-05/0.2398, allocations: 0 / 0.9795 GB, free: 3.383 MB / 0.6824 GB
Notification: Performance of NFTyping.typeComponents: time 8.961e-05/0.2399, allocations: 3.938 kB / 0.9795 GB, free: 3.379 MB / 0.6824 GB
Notification: Performance of NFTyping.typeBindings: time 4.931e-05/0.2399, allocations: 11.94 kB / 0.9795 GB, free: 3.367 MB / 0.6824 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001862/0.2401, allocations: 15.98 kB / 0.9795 GB, free: 3.352 MB / 0.6824 GB
Notification: Performance of NFFlatten.flatten: time 0.0002401/0.2404, allocations: 155.7 kB / 0.9796 GB, free: 3.199 MB / 0.6824 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.817e-05/0.2404, allocations: 0 / 0.9796 GB, free: 3.199 MB / 0.6824 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001445/0.2406, allocations: 59.94 kB / 0.9797 GB, free: 3.141 MB / 0.6824 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002386/0.2408, allocations: 87.72 kB / 0.9798 GB, free: 3.055 MB / 0.6824 GB
Notification: Performance of NFPackage.collectConstants: time 3.67e-05/0.2408, allocations: 8 kB / 0.9798 GB, free: 3.047 MB / 0.6824 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.904e-05/0.2409, allocations: 12 kB / 0.9798 GB, free: 3.035 MB / 0.6824 GB
Notification: Performance of NFScalarize.scalarize: time 5.119e-05/0.2409, allocations: 31.89 kB / 0.9798 GB, free: 3.004 MB / 0.6824 GB
Notification: Performance of NFVerifyModel.verify: time 7.091e-05/0.241, allocations: 35.83 kB / 0.9799 GB, free: 2.969 MB / 0.6824 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001377/0.2411, allocations: 71.73 kB / 0.9799 GB, free: 2.898 MB / 0.6824 GB
Notification: Performance of FrontEnd - DAE generated: time 3.897e-06/0.2411, allocations: 0 / 0.9799 GB, free: 2.898 MB / 0.6824 GB
Notification: Performance of FrontEnd: time 1.472e-06/0.2411, allocations: 0 / 0.9799 GB, free: 2.898 MB / 0.6824 GB
Notification: Performance of Transformations before backend: time 6.683e-06/0.2411, allocations: 0 / 0.9799 GB, free: 2.898 MB / 0.6824 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.002132/0.2433, allocations: 0.4901 MB / 0.9804 GB, free: 2.375 MB / 0.6824 GB
Notification: Performance of prepare preOptimizeDAE: time 4.548e-05/0.2433, allocations: 10.11 kB / 0.9804 GB, free: 2.367 MB / 0.6824 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.948e-05/0.2434, allocations: 8.891 kB / 0.9804 GB, free: 2.359 MB / 0.6824 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002339/0.2436, allocations: 130.4 kB / 0.9806 GB, free: 2.207 MB / 0.6824 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.092e-05/0.2436, allocations: 8.375 kB / 0.9806 GB, free: 2.199 MB / 0.6824 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.247e-05/0.2436, allocations: 4.375 kB / 0.9806 GB, free: 2.195 MB / 0.6824 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005391/0.2442, allocations: 155.8 kB / 0.9807 GB, free: 2.031 MB / 0.6824 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.054e-05/0.2442, allocations: 192 / 0.9807 GB, free: 2.031 MB / 0.6824 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.165e-05/0.2442, allocations: 3.938 kB / 0.9807 GB, free: 2.027 MB / 0.6824 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.861e-06/0.2442, allocations: 0 / 0.9807 GB, free: 2.027 MB / 0.6824 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006578/0.2449, allocations: 139.9 kB / 0.9809 GB, free: 1.891 MB / 0.6824 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0003713/0.2453, allocations: 229.4 kB / 0.9811 GB, free: 1.633 MB / 0.6824 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004957/0.2457, allocations: 98.48 kB / 0.9812 GB, free: 1.527 MB / 0.6824 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003858/0.2461, allocations: 112.7 kB / 0.9813 GB, free: 1.414 MB / 0.6824 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.447e-05/0.2462, allocations: 3.938 kB / 0.9813 GB, free: 1.41 MB / 0.6824 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.996e-05/0.2462, allocations: 34.56 kB / 0.9813 GB, free: 1.367 MB / 0.6824 GB
Notification: Performance of pre-optimization done (n=11): time 1.162e-06/0.2462, allocations: 0 / 0.9813 GB, free: 1.367 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=11): time 0.001185/0.2474, allocations: 281.4 kB / 0.9816 GB, free: 1.086 MB / 0.6824 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.247e-05/0.2474, allocations: 59.34 kB / 0.9816 GB, free: 1.016 MB / 0.6824 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001359/0.2476, allocations: 110.1 kB / 0.9817 GB, free: 0.8984 MB / 0.6824 GB
Notification: Performance of collectPreVariables (initialization): time 2.969e-05/0.2476, allocations: 29.64 kB / 0.9818 GB, free: 0.8633 MB / 0.6824 GB
Notification: Performance of collectInitialEqns (initialization): time 7.265e-05/0.2477, allocations: 88.14 kB / 0.9819 GB, free: 0.7734 MB / 0.6824 GB
Notification: Performance of collectInitialBindings (initialization): time 4.958e-05/0.2477, allocations: 39.64 kB / 0.9819 GB, free: 0.7344 MB / 0.6824 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.2e-05/0.2478, allocations: 33.7 kB / 0.9819 GB, free: 0.6953 MB / 0.6824 GB
Notification: Performance of setup shared object (initialization): time 0.0001674/0.248, allocations: 314.8 kB / 0.9822 GB, free: 388 kB / 0.6824 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000345/0.2483, allocations: 79.92 kB / 0.9823 GB, free: 308 kB / 0.6824 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003466/0.2487, allocations: 93.64 kB / 0.9824 GB, free: 208 kB / 0.6824 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0006676/0.2493, allocations: 173.6 kB / 0.9826 GB, free: 28 kB / 0.6824 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.224e-06/0.2493, allocations: 0 / 0.9826 GB, free: 28 kB / 0.6824 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0007996/0.2501, allocations: 221.4 kB / 0.9828 GB, free: 15.8 MB / 0.698 GB
Notification: Performance of prepare postOptimizeDAE: time 1.654e-05/0.2501, allocations: 4 kB / 0.9828 GB, free: 15.8 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.861e-06/0.2501, allocations: 0 / 0.9828 GB, free: 15.8 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.989e-05/0.2502, allocations: 0 / 0.9828 GB, free: 15.8 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005034/0.2507, allocations: 75.89 kB / 0.9828 GB, free: 15.72 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.653e-06/0.2507, allocations: 0 / 0.9828 GB, free: 15.72 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000372/0.251, allocations: 59.88 kB / 0.9829 GB, free: 15.66 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.212e-05/0.2511, allocations: 4 kB / 0.9829 GB, free: 15.66 MB / 0.698 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001287/0.2512, allocations: 117.8 kB / 0.983 GB, free: 15.54 MB / 0.698 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.826e-05/0.2512, allocations: 11.89 kB / 0.983 GB, free: 15.52 MB / 0.698 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001014/0.2522, allocations: 313.4 kB / 0.9833 GB, free: 15.21 MB / 0.698 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.221e-06/0.2522, allocations: 4 kB / 0.9833 GB, free: 15.21 MB / 0.698 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.82e-06/0.2523, allocations: 0 / 0.9833 GB, free: 15.21 MB / 0.698 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.547e-06/0.2523, allocations: 0 / 0.9833 GB, free: 15.21 MB / 0.698 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002335/0.2525, allocations: 153.5 kB / 0.9835 GB, free: 15.03 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.101e-06/0.2525, allocations: 4 kB / 0.9835 GB, free: 15.03 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004761/0.253, allocations: 83.94 kB / 0.9836 GB, free: 14.95 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.572e-06/0.253, allocations: 3.938 kB / 0.9836 GB, free: 14.94 MB / 0.698 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.146e-05/0.253, allocations: 7.922 kB / 0.9836 GB, free: 14.93 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.696e-06/0.253, allocations: 7.984 kB / 0.9836 GB, free: 14.93 MB / 0.698 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.032e-06/0.253, allocations: 0 / 0.9836 GB, free: 14.93 MB / 0.698 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0008464/0.2539, allocations: 284.8 kB / 0.9839 GB, free: 14.63 MB / 0.698 GB
Notification: Performance of postOpt removeConstants (simulation): time 2.821e-05/0.2539, allocations: 11.89 kB / 0.9839 GB, free: 14.62 MB / 0.698 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.438e-05/0.2539, allocations: 11.94 kB / 0.9839 GB, free: 14.61 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003316/0.2543, allocations: 47.94 kB / 0.9839 GB, free: 14.56 MB / 0.698 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000104/0.2544, allocations: 23.97 kB / 0.9839 GB, free: 14.54 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.085e-05/0.2544, allocations: 7.984 kB / 0.984 GB, free: 14.53 MB / 0.698 GB
Notification: Performance of sorting global known variables: time 6.821e-05/0.2544, allocations: 95.22 kB / 0.984 GB, free: 14.43 MB / 0.698 GB
Notification: Performance of sort global known variables: time 9e-08/0.2544, allocations: 0 / 0.984 GB, free: 14.43 MB / 0.698 GB
Notification: Performance of remove unused functions: time 0.0002416/0.2547, allocations: 28 kB / 0.9841 GB, free: 14.41 MB / 0.698 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001326/0.2548, allocations: 103.2 kB / 0.9842 GB, free: 14.3 MB / 0.698 GB
Notification: Performance of simCode: created initialization part: time 0.0007628/0.2556, allocations: 192.6 kB / 0.9844 GB, free: 14.11 MB / 0.698 GB
Notification: Performance of simCode: created event and clocks part: time 2.444e-06/0.2556, allocations: 0 / 0.9844 GB, free: 14.11 MB / 0.698 GB
Notification: Performance of simCode: created simulation system equations: time 0.0003739/0.256, allocations: 115.8 kB / 0.9845 GB, free: 14 MB / 0.698 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002102/0.2562, allocations: 12 kB / 0.9845 GB, free: 13.98 MB / 0.698 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.000625/0.2568, allocations: 237.9 kB / 0.9847 GB, free: 13.73 MB / 0.698 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001039/0.2569, allocations: 91.27 kB / 0.9848 GB, free: 13.62 MB / 0.698 GB
Notification: Performance of simCode: alias equations: time 0.0001397/0.257, allocations: 36.33 kB / 0.9848 GB, free: 13.58 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001211/0.2572, allocations: 19.44 kB / 0.9848 GB, free: 13.56 MB / 0.698 GB
Notification: Performance of SimCode: time 8.837e-06/0.2572, allocations: 0 / 0.9848 GB, free: 13.56 MB / 0.698 GB
Notification: Performance of Templates: time 0.006981/0.2641, allocations: 2.84 MB / 0.9876 GB, free: 10.75 MB / 0.698 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 10.26814448996447]