Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001257/0.001257, allocations: 103.6 kB / 18.95 MB, free: 2.691 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001411/0.001411, allocations: 215.7 kB / 22.25 MB, free: 4.73 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.389/1.389, allocations: 230.6 MB / 256 MB, free: 7.801 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1395/0.1395, allocations: 23.99 MB / 336.4 MB, free: 10.86 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002332/0.002332, allocations: 67.91 kB / 471.8 MB, free: 6.855 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.338/0.3403, allocations: 59.89 MB / 0.5192 GB, free: 9.703 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.123/0.4633, allocations: 74.39 MB / 0.5919 GB, free: 15.23 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5565/1.02, allocations: 191.2 MB / 0.7786 GB, free: 16.25 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01653/1.036, allocations: 231.9 kB / 0.7788 GB, free: 16.24 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01627/1.053, allocations: 4.452 MB / 0.7832 GB, free: 16.21 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.05828/1.111, allocations: 17.88 MB / 0.8006 GB, free: 15.6 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0797/1.191, allocations: 32.66 MB / 0.8325 GB, free: 15.92 MB / 0.5762 GB
Notification: Performance of NFFlatten.flatten: time 0.0975/1.288, allocations: 89.11 MB / 0.9196 GB, free: 1.988 MB / 0.6387 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.08146/1.37, allocations: 51.84 MB / 0.9702 GB, free: 20 kB / 0.6856 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.7739/2.143, allocations: 56.59 MB / 1.025 GB, free: 43.45 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.09935/2.243, allocations: 54.22 MB / 1.078 GB, free: 40.62 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.04532/2.288, allocations: 12.21 MB / 1.09 GB, free: 40.62 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1212/2.409, allocations: 33.9 MB / 1.123 GB, free: 31.03 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.04607/2.455, allocations: 24.02 MB / 1.147 GB, free: 11.48 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.127/2.582, allocations: 39.42 MB / 1.185 GB, free: 12.68 MB / 0.7326 GB
Notification: Performance of NFConvertDAE.convert: time 0.9513/3.534, allocations: 159.6 MB / 1.341 GB, free: 107.9 MB / 0.8264 GB
Notification: Performance of FrontEnd - DAE generated: time 7.144e-06/3.534, allocations: 0 / 1.341 GB, free: 107.9 MB / 0.8264 GB
Notification: Performance of FrontEnd: time 1.523e-06/3.534, allocations: 0 / 1.341 GB, free: 107.9 MB / 0.8264 GB
Notification: Performance of Transformations before backend: time 0.003355/3.537, allocations: 0 / 1.341 GB, free: 107.9 MB / 0.8264 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2578/3.795, allocations: 71.67 MB / 1.411 GB, free: 87.46 MB / 0.8264 GB
Notification: Performance of prepare preOptimizeDAE: time 4.42e-05/3.795, allocations: 11.41 kB / 1.411 GB, free: 87.46 MB / 0.8264 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08484/3.88, allocations: 11.94 MB / 1.423 GB, free: 83.32 MB / 0.8264 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.09858/3.978, allocations: 42.62 MB / 1.465 GB, free: 65.76 MB / 0.8264 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005997/3.984, allocations: 9.235 MB / 1.474 GB, free: 56.34 MB / 0.8264 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03846/4.023, allocations: 4.6 MB / 1.478 GB, free: 51.74 MB / 0.8264 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2919/4.315, allocations: 112.9 MB / 1.588 GB, free: 2.18 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002019/4.317, allocations: 28.41 kB / 1.588 GB, free: 2.168 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03319/4.35, allocations: 1.765 MB / 1.59 GB, free: 416 kB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001021/4.351, allocations: 1.055 MB / 1.591 GB, free: 15.35 MB / 0.9045 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.7017/5.053, allocations: 153 MB / 1.741 GB, free: 333.2 MB / 0.9358 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.261/6.314, allocations: 389 MB / 2.12 GB, free: 280.6 MB / 0.9358 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.069/8.383, allocations: 0.6474 GB / 2.768 GB, free: 199.3 MB / 0.9358 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.09868/8.481, allocations: 60.05 MB / 2.826 GB, free: 141.3 MB / 0.9358 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.8055/9.287, allocations: 254.6 MB / 3.075 GB, free: 273 MB / 0.9358 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002368/9.287, allocations: 336.9 kB / 3.075 GB, free: 272.7 MB / 0.9358 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.08972/9.377, allocations: 29.13 MB / 3.104 GB, free: 265.9 MB / 0.9358 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001352/9.377, allocations: 0 / 3.104 GB, free: 265.9 MB / 0.9358 GB
Notification: Performance of matching and sorting (n=3387): time 2.33/11.71, allocations: 423.7 MB / 3.518 GB, free: 259.2 MB / 0.9358 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002819/11.71, allocations: 449.8 kB / 3.518 GB, free: 259 MB / 0.9358 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.05622/11.76, allocations: 30.72 MB / 3.548 GB, free: 243.8 MB / 0.9358 GB
Notification: Performance of collectPreVariables (initialization): time 0.01417/11.78, allocations: 0.572 MB / 3.549 GB, free: 243.4 MB / 0.9358 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0159/11.79, allocations: 21.63 MB / 3.57 GB, free: 228 MB / 0.9358 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02369/11.82, allocations: 12.42 MB / 3.582 GB, free: 215.7 MB / 0.9358 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0549/11.87, allocations: 9.926 MB / 3.592 GB, free: 205.8 MB / 0.9358 GB
Notification: Performance of setup shared object (initialization): time 4.723e-05/11.87, allocations: 309.1 kB / 3.592 GB, free: 205.5 MB / 0.9358 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.06961/11.94, allocations: 39.05 MB / 3.63 GB, free: 166.4 MB / 0.9358 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.07945/12.02, allocations: 53.24 MB / 3.682 GB, free: 106.9 MB / 0.9358 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.5718/12.59, allocations: 96.36 MB / 3.776 GB, free: 273.8 MB / 0.9358 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0004193/12.59, allocations: 124.2 kB / 3.776 GB, free: 273.8 MB / 0.9358 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.312/13.91, allocations: 257.1 MB / 4.027 GB, free: 135.6 MB / 0.9358 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0008101/13.91, allocations: 192 kB / 4.028 GB, free: 135.4 MB / 0.9358 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.00121/13.91, allocations: 449.7 kB / 4.028 GB, free: 135 MB / 0.9358 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1712/14.08, allocations: 73.71 MB / 4.1 GB, free: 61.54 MB / 0.9358 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05104/14.13, allocations: 11.18 MB / 4.111 GB, free: 50.35 MB / 0.9358 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.9736/15.1, allocations: 309.6 MB / 4.413 GB, free: 124.4 MB / 0.9358 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05334/15.16, allocations: 2.479 MB / 4.416 GB, free: 121.9 MB / 0.9358 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0172/15.17, allocations: 2.801 MB / 4.418 GB, free: 119.1 MB / 0.9358 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.04651/15.22, allocations: 18.35 MB / 4.436 GB, free: 101.5 MB / 0.9358 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0221/15.24, allocations: 3.166 MB / 4.439 GB, free: 100.1 MB / 0.9358 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.181/16.42, allocations: 152.3 MB / 4.588 GB, free: 252.8 MB / 0.9358 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003303/16.42, allocations: 359 kB / 4.588 GB, free: 252.8 MB / 0.9358 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0005051/16.42, allocations: 58.28 kB / 4.588 GB, free: 252.8 MB / 0.9358 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001286/16.43, allocations: 180.2 kB / 4.589 GB, free: 252.8 MB / 0.9358 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.9423/17.37, allocations: 223.2 MB / 4.807 GB, free: 117.7 MB / 0.9358 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003863/17.37, allocations: 9 kB / 4.807 GB, free: 117.7 MB / 0.9358 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04363/17.41, allocations: 7.251 MB / 4.814 GB, free: 110.4 MB / 0.9358 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.09682/17.51, allocations: 39.74 MB / 4.853 GB, free: 70.94 MB / 0.9358 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01473/17.52, allocations: 1.448 MB / 4.854 GB, free: 69.49 MB / 0.9358 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.7605/18.28, allocations: 155.6 MB / 5.006 GB, free: 233.7 MB / 0.9358 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.293e-05/18.28, allocations: 19.92 kB / 5.006 GB, free: 233.7 MB / 0.9358 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.8705/19.15, allocations: 200.2 MB / 5.201 GB, free: 99.84 MB / 0.9358 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03464/19.19, allocations: 11.32 MB / 5.213 GB, free: 90.39 MB / 0.9358 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01985/19.21, allocations: 0.9216 MB / 5.213 GB, free: 89.47 MB / 0.9358 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04986/19.26, allocations: 1.549 MB / 5.215 GB, free: 87.92 MB / 0.9358 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02682/19.29, allocations: 4.684 MB / 5.219 GB, free: 83.22 MB / 0.9358 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01314/19.3, allocations: 1.386 MB / 5.221 GB, free: 81.84 MB / 0.9358 GB
Notification: Performance of sorting global known variables: time 0.04028/19.34, allocations: 20.8 MB / 5.241 GB, free: 61.17 MB / 0.9358 GB
Notification: Performance of sort global known variables: time 4.61e-07/19.34, allocations: 0 / 5.241 GB, free: 61.17 MB / 0.9358 GB
Notification: Performance of remove unused functions: time 0.1074/19.45, allocations: 20.21 MB / 5.261 GB, free: 41.17 MB / 0.9358 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03773/19.48, allocations: 10.81 MB / 5.271 GB, free: 31.64 MB / 0.9358 GB
Notification: Performance of simCode: created initialization part: time 0.6825/20.17, allocations: 85.3 MB / 5.355 GB, free: 259.4 MB / 0.9358 GB
Notification: Performance of simCode: created event and clocks part: time 2.011e-05/20.17, allocations: 0 / 5.355 GB, free: 259.4 MB / 0.9358 GB
Notification: Performance of simCode: created simulation system equations: time 0.1452/20.31, allocations: 54.53 MB / 5.408 GB, free: 237.8 MB / 0.9358 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.08386/20.4, allocations: 7.694 MB / 5.416 GB, free: 234.9 MB / 0.9358 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.3332/20.73, allocations: 122.9 MB / 5.536 GB, free: 150.9 MB / 0.9358 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.06702/20.8, allocations: 30.57 MB / 5.565 GB, free: 128.5 MB / 0.9358 GB
Notification: Performance of simCode: alias equations: time 0.06536/20.86, allocations: 15.45 MB / 5.58 GB, free: 113.8 MB / 0.9358 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.02904/20.89, allocations: 4.255 MB / 5.585 GB, free: 109.5 MB / 0.9358 GB
Notification: Performance of SimCode: time 1.172e-06/20.89, allocations: 0 / 5.585 GB, free: 109.5 MB / 0.9358 GB
Notification: Performance of Templates: time 2.791/23.68, allocations: 1.075 GB / 6.659 GB, free: 36.07 MB / 0.9358 GB
"
[Timeout remaining time 636]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 65.30621644109488]
Failed to read output from testmodel.py, exit status != 0:
23.691582852974534 23.703513737 20.167058671
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f431bff6fe0>