Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008391/0.0008391, allocations: 105.5 kB / 18.95 MB, free: 1.188 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009019/0.0009019, allocations: 212.7 kB / 22.25 MB, free: 3.57 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9616/0.9616, allocations: 230.6 MB / 256 MB, free: 9.617 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.439/1.439, allocations: 334.3 MB / 0.6315 GB, free: 7.996 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001148/0.001148, allocations: 67.89 kB / 0.8666 GB, free: 7.914 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1955/0.1966, allocations: 112.8 MB / 0.9767 GB, free: 6.824 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005203/0.2018, allocations: 6.032 MB / 0.9826 GB, free: 0.7656 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.002257/0.2041, allocations: 1.974 MB / 0.9846 GB, free: 14.79 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002653/0.2044, allocations: 19.94 kB / 0.9846 GB, free: 14.77 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.000568/0.2049, allocations: 281.8 kB / 0.9848 GB, free: 14.49 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0005191/0.2054, allocations: 452.5 kB / 0.9853 GB, free: 14.04 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007127/0.2062, allocations: 0.5227 MB / 0.9858 GB, free: 13.52 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001354/0.2075, allocations: 1.755 MB / 0.9875 GB, free: 11.76 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003543/0.2079, allocations: 251.6 kB / 0.9877 GB, free: 11.5 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.3563/0.5641, allocations: 0.6015 MB / 0.9883 GB, free: 18.66 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0006698/0.5648, allocations: 0.6118 MB / 0.9889 GB, free: 18.62 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0001615/0.565, allocations: 168.3 kB / 0.9891 GB, free: 18.62 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003528/0.5653, allocations: 312.1 kB / 0.9894 GB, free: 18.62 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0001834/0.5655, allocations: 368.3 kB / 0.9897 GB, free: 18.56 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0003381/0.5658, allocations: 0.6228 MB / 0.9903 GB, free: 18.39 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.00133/0.5672, allocations: 2.149 MB / 0.9924 GB, free: 18.12 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 3.296e-06/0.5672, allocations: 0 / 0.9924 GB, free: 18.12 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.323e-06/0.5672, allocations: 0 / 0.9924 GB, free: 18.12 MB / 0.698 GB Notification: Performance of Transformations before backend: time 1.488e-05/0.5672, allocations: 1.375 kB / 0.9924 GB, free: 18.12 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.001776/0.569, allocations: 2.229 MB / 0.9946 GB, free: 16.64 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.497e-05/0.569, allocations: 11.55 kB / 0.9946 GB, free: 16.64 MB / 0.698 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0001335/0.5691, allocations: 145.1 kB / 0.9948 GB, free: 16.6 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000469/0.5696, allocations: 241.2 kB / 0.995 GB, free: 16.52 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006614/0.5703, allocations: 0.709 MB / 0.9957 GB, free: 16.2 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.842e-05/0.5703, allocations: 69.39 kB / 0.9958 GB, free: 16.2 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001188/0.5704, allocations: 111.3 kB / 0.9959 GB, free: 16.19 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001668/0.5721, allocations: 1.993 MB / 0.9978 GB, free: 15.58 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.573e-05/0.5721, allocations: 13.55 kB / 0.9978 GB, free: 15.57 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.1e-05/0.5722, allocations: 39.2 kB / 0.9979 GB, free: 15.57 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.326e-05/0.5722, allocations: 20.41 kB / 0.9979 GB, free: 15.57 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001539/0.5737, allocations: 1.806 MB / 0.9996 GB, free: 15.05 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002506/0.5763, allocations: 2.571 MB / 1.002 GB, free: 14.33 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001876/0.5781, allocations: 1.939 MB / 1.004 GB, free: 13.2 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001047/0.5792, allocations: 1.416 MB / 1.005 GB, free: 12.3 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 4.749e-05/0.5792, allocations: 18.45 kB / 1.005 GB, free: 12.3 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00183/0.5811, allocations: 2.289 MB / 1.008 GB, free: 10.73 MB / 0.698 GB Notification: Performance of pre-optimization done (n=157): time 2.555e-06/0.5811, allocations: 0 / 1.008 GB, free: 10.73 MB / 0.698 GB Notification: Performance of matching and sorting (n=165): time 0.009095/0.5901, allocations: 9.299 MB / 1.017 GB, free: 4.828 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003453/0.5905, allocations: 1.027 MB / 1.018 GB, free: 3.617 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001254/0.5917, allocations: 0.9892 MB / 1.019 GB, free: 3.191 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 0.0001033/0.5919, allocations: 76.11 kB / 1.019 GB, free: 3.133 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003818/0.5922, allocations: 492 kB / 1.019 GB, free: 2.75 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.000326/0.5926, allocations: 0.5318 MB / 1.02 GB, free: 2.344 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003206/0.5929, allocations: 284.1 kB / 1.02 GB, free: 2.223 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 6.779e-05/0.5929, allocations: 307.2 kB / 1.02 GB, free: 1.922 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.00131/0.5943, allocations: 1.625 MB / 1.022 GB, free: 0.8672 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001609/0.5959, allocations: 2.03 MB / 1.024 GB, free: 15.32 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.005295/0.6012, allocations: 6.583 MB / 1.03 GB, free: 10.95 MB / 0.7137 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.663e-06/0.6012, allocations: 3.781 kB / 1.03 GB, free: 10.95 MB / 0.7137 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.00337/0.6045, allocations: 3.921 MB / 1.034 GB, free: 8.621 MB / 0.7137 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002126/0.6048, allocations: 0.5649 MB / 1.035 GB, free: 7.977 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.606e-05/0.6048, allocations: 11.5 kB / 1.035 GB, free: 7.977 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.828e-05/0.6048, allocations: 18.58 kB / 1.035 GB, free: 7.977 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006379/0.6054, allocations: 316.5 kB / 1.035 GB, free: 7.965 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.835e-05/0.6055, allocations: 23.05 kB / 1.035 GB, free: 7.965 MB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004863/0.6059, allocations: 90 kB / 1.035 GB, free: 7.938 MB / 0.7137 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002339/0.6062, allocations: 249.6 kB / 1.035 GB, free: 7.918 MB / 0.7137 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008564/0.607, allocations: 1.1 MB / 1.036 GB, free: 7.02 MB / 0.7137 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000254/0.6073, allocations: 172.9 kB / 1.037 GB, free: 6.938 MB / 0.7137 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001525/0.6074, allocations: 141.2 kB / 1.037 GB, free: 6.848 MB / 0.7137 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.596e-06/0.6074, allocations: 14.88 kB / 1.037 GB, free: 6.848 MB / 0.7137 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.329e-05/0.6075, allocations: 1.469 kB / 1.037 GB, free: 6.848 MB / 0.7137 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.349e-05/0.6075, allocations: 7.703 kB / 1.037 GB, free: 6.848 MB / 0.7137 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005462/0.6129, allocations: 5.166 MB / 1.042 GB, free: 3.875 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.861e-06/0.6129, allocations: 1.375 kB / 1.042 GB, free: 3.875 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008194/0.6138, allocations: 240.1 kB / 1.042 GB, free: 3.863 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.006e-05/0.6138, allocations: 13.3 kB / 1.042 GB, free: 3.859 MB / 0.7137 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001174/0.6139, allocations: 62.91 kB / 1.042 GB, free: 3.832 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.232e-06/0.6139, allocations: 5.688 kB / 1.042 GB, free: 3.832 MB / 0.7137 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.304e-06/0.6139, allocations: 4.656 kB / 1.042 GB, free: 3.832 MB / 0.7137 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.005578/0.6195, allocations: 5.855 MB / 1.048 GB, free: 304 kB / 0.7137 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005626/0.62, allocations: 320.1 kB / 1.048 GB, free: 60 kB / 0.7137 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002137/0.6203, allocations: 78.23 kB / 1.048 GB, free: 16 kB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006057/0.6209, allocations: 74.64 kB / 1.048 GB, free: 15.98 MB / 0.7293 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002874/0.6212, allocations: 157.8 kB / 1.048 GB, free: 15.89 MB / 0.7293 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0002331/0.6214, allocations: 240.3 kB / 1.049 GB, free: 15.79 MB / 0.7293 GB Notification: Performance of sorting global known variables: time 0.0007805/0.6222, allocations: 0.692 MB / 1.049 GB, free: 15.38 MB / 0.7293 GB Notification: Performance of sort global known variables: time 8e-08/0.6222, allocations: 1.125 kB / 1.049 GB, free: 15.38 MB / 0.7293 GB Notification: Performance of remove unused functions: time 0.001089/0.6233, allocations: 375.8 kB / 1.05 GB, free: 15.34 MB / 0.7293 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.006305/0.6296, allocations: 6.592 MB / 1.056 GB, free: 10.79 MB / 0.7293 GB Notification: Performance of simCode: created initialization part: time 0.004018/0.6336, allocations: 4.491 MB / 1.061 GB, free: 7.242 MB / 0.7293 GB Notification: Performance of simCode: created event and clocks part: time 2.945e-06/0.6336, allocations: 320 / 1.061 GB, free: 7.242 MB / 0.7293 GB Notification: Performance of simCode: created simulation system equations: time 0.002065/0.6356, allocations: 2.583 MB / 1.063 GB, free: 5.094 MB / 0.7293 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001469/0.6371, allocations: 362.7 kB / 1.063 GB, free: 4.93 MB / 0.7293 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.02286/0.66, allocations: 20.33 MB / 1.083 GB, free: 2.355 MB / 0.7449 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0006709/0.6606, allocations: 0.6565 MB / 1.084 GB, free: 1.66 MB / 0.7449 GB Notification: Performance of simCode: alias equations: time 0.0004891/0.6611, allocations: 124.1 kB / 1.084 GB, free: 1.535 MB / 0.7449 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005825/0.6617, allocations: 0.5057 MB / 1.085 GB, free: 1.031 MB / 0.7449 GB Notification: Performance of SimCode: time 7.31e-07/0.6617, allocations: 0 / 1.085 GB, free: 1.031 MB / 0.7449 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.1457/0.8074, allocations: 38.33 MB / 1.122 GB, free: 11.59 MB / 0.7918 GB Notification: Performance of buildModelFMU: Generate platform static: time 8.067/8.875, allocations: 3.438 kB / 1.122 GB, free: 11.59 MB / 0.7918 GB " [Timeout remaining time 651] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment_fmu --startTime=0 --stopTime=864000 --stepSize=10 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 10 ../Pharmacolibrary_Pharmacolibrary_Examples_Pharmacogenomics_PKPG_Lithium_Experiment.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment_fmpy.pipe 2>&1) [Timeout 52.5] [Calling sys.exit(0), Time elapsed: 16.061383693479]