Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001244/0.001244, allocations: 109.5 kB / 18.95 MB, free: 1.184 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001407/0.001407, allocations: 218.8 kB / 22.25 MB, free: 3.582 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9521/0.9521, allocations: 230.6 MB / 256 MB, free: 9.613 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.436/1.436, allocations: 334.3 MB / 0.6315 GB, free: 7.961 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001016/0.001016, allocations: 83.88 kB / 0.8666 GB, free: 7.875 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1743/0.1754, allocations: 112.8 MB / 0.9767 GB, free: 6.797 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005773/0.1811, allocations: 6.195 MB / 0.9828 GB, free: 0.5703 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.00212/0.1832, allocations: 1.29 MB / 0.984 GB, free: 15.28 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003578/0.1836, allocations: 8 kB / 0.984 GB, free: 15.27 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.000257/0.1839, allocations: 118.8 kB / 0.9842 GB, free: 15.15 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0005654/0.1844, allocations: 313.4 kB / 0.9845 GB, free: 14.84 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005587/0.185, allocations: 295.6 kB / 0.9847 GB, free: 14.55 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.0009807/0.186, allocations: 1.167 MB / 0.9859 GB, free: 13.38 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002886/0.1863, allocations: 167.9 kB / 0.986 GB, free: 13.2 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0004512/0.1867, allocations: 426.6 kB / 0.9864 GB, free: 12.79 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0005639/0.1873, allocations: 406 kB / 0.9868 GB, free: 12.39 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.000149/0.1874, allocations: 112 kB / 0.9869 GB, free: 12.28 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001412/0.1876, allocations: 112 kB / 0.987 GB, free: 12.17 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0001062/0.1877, allocations: 191.3 kB / 0.9872 GB, free: 11.98 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.000347/0.188, allocations: 422.3 kB / 0.9876 GB, free: 11.57 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.3714/0.5594, allocations: 1.149 MB / 0.9888 GB, free: 20.91 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 5.831e-06/0.5594, allocations: 0 / 0.9888 GB, free: 20.91 MB / 0.698 GB Notification: Performance of FrontEnd: time 2.254e-06/0.5594, allocations: 1.656 kB / 0.9888 GB, free: 20.91 MB / 0.698 GB Notification: Performance of Transformations before backend: time 1.7e-05/0.5594, allocations: 0 / 0.9888 GB, free: 20.91 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001395/0.5608, allocations: 1.338 MB / 0.9901 GB, free: 20.04 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 4.722e-05/0.5609, allocations: 10.86 kB / 0.9901 GB, free: 20.04 MB / 0.698 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 9.558e-05/0.561, allocations: 100 kB / 0.9902 GB, free: 20 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000107/0.5611, allocations: 92.41 kB / 0.9903 GB, free: 19.96 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004769/0.5615, allocations: 457.3 kB / 0.9907 GB, free: 19.74 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.158e-05/0.5616, allocations: 47.28 kB / 0.9907 GB, free: 19.74 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.069e-05/0.5617, allocations: 66.73 kB / 0.9908 GB, free: 19.73 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.00091/0.5626, allocations: 0.8603 MB / 0.9916 GB, free: 19.45 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.799e-05/0.5626, allocations: 9.031 kB / 0.9917 GB, free: 19.45 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.986e-05/0.5626, allocations: 22.25 kB / 0.9917 GB, free: 19.45 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.082e-05/0.5626, allocations: 16.11 kB / 0.9917 GB, free: 19.45 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008667/0.5635, allocations: 0.7452 MB / 0.9924 GB, free: 19.25 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001762/0.5653, allocations: 1.823 MB / 0.9942 GB, free: 18.52 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001075/0.5663, allocations: 0.8112 MB / 0.995 GB, free: 18.26 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004375/0.5668, allocations: 485 kB / 0.9954 GB, free: 18.05 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 3.876e-05/0.5668, allocations: 13.39 kB / 0.9955 GB, free: 18.05 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008853/0.5677, allocations: 1.097 MB / 0.9965 GB, free: 17.4 MB / 0.698 GB Notification: Performance of pre-optimization done (n=99): time 2.225e-06/0.5677, allocations: 2.562 kB / 0.9965 GB, free: 17.4 MB / 0.698 GB Notification: Performance of matching and sorting (n=105): time 0.003721/0.5714, allocations: 3.557 MB / 1 GB, free: 15.73 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001189/0.5716, allocations: 0.5988 MB / 1.001 GB, free: 15.04 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005318/0.5721, allocations: 0.5428 MB / 1.001 GB, free: 14.91 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 5.378e-05/0.5721, allocations: 59.41 kB / 1.001 GB, free: 14.88 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001476/0.5723, allocations: 297.1 kB / 1.001 GB, free: 14.74 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001706/0.5725, allocations: 354 kB / 1.002 GB, free: 14.53 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002109/0.5727, allocations: 186.4 kB / 1.002 GB, free: 14.51 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 0.0001014/0.5728, allocations: 400.6 kB / 1.002 GB, free: 14.19 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006151/0.5734, allocations: 0.6336 MB / 1.003 GB, free: 13.89 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007428/0.5741, allocations: 0.9602 MB / 1.004 GB, free: 13.2 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002725/0.5769, allocations: 2.506 MB / 1.006 GB, free: 11.41 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.136e-05/0.5769, allocations: 2.531 kB / 1.006 GB, free: 11.41 MB / 0.698 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.002419/0.5793, allocations: 1.742 MB / 1.008 GB, free: 10.36 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001208/0.5794, allocations: 264 kB / 1.008 GB, free: 10.07 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.738e-05/0.5794, allocations: 13.05 kB / 1.008 GB, free: 10.07 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.02e-05/0.5795, allocations: 13.75 kB / 1.008 GB, free: 10.07 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005636/0.58, allocations: 241.6 kB / 1.009 GB, free: 10.05 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.616e-05/0.58, allocations: 19.64 kB / 1.009 GB, free: 10.05 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005861/0.5806, allocations: 61.8 kB / 1.009 GB, free: 10.04 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.233e-05/0.5807, allocations: 51.39 kB / 1.009 GB, free: 10.03 MB / 0.698 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007824/0.5815, allocations: 0.5783 MB / 1.009 GB, free: 9.57 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001432/0.5816, allocations: 92.73 kB / 1.009 GB, free: 9.523 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001163/0.5818, allocations: 82.06 kB / 1.009 GB, free: 9.465 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.455e-05/0.5818, allocations: 9.062 kB / 1.009 GB, free: 9.465 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.118e-05/0.5818, allocations: 0.5312 kB / 1.009 GB, free: 9.465 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.254e-05/0.5818, allocations: 5.609 kB / 1.009 GB, free: 9.465 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002947/0.5848, allocations: 2.396 MB / 1.012 GB, free: 8.016 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.28e-06/0.5848, allocations: 1.094 kB / 1.012 GB, free: 8.016 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005556/0.5853, allocations: 167.2 kB / 1.012 GB, free: 8.012 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.156e-05/0.5853, allocations: 4.016 kB / 1.012 GB, free: 8.012 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.507e-05/0.5854, allocations: 37.14 kB / 1.012 GB, free: 7.996 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.037e-05/0.5854, allocations: 8.312 kB / 1.012 GB, free: 7.992 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.776e-06/0.5854, allocations: 4.562 kB / 1.012 GB, free: 7.988 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003086/0.5885, allocations: 2.25 MB / 1.014 GB, free: 6.555 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003699/0.5889, allocations: 168.6 kB / 1.014 GB, free: 6.453 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001335/0.589, allocations: 53.62 kB / 1.014 GB, free: 6.422 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000333/0.5893, allocations: 47.77 kB / 1.014 GB, free: 6.414 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002375/0.5896, allocations: 102.9 kB / 1.015 GB, free: 6.387 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.617e-05/0.5897, allocations: 37.33 kB / 1.015 GB, free: 6.379 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.0005731/0.5902, allocations: 371.7 kB / 1.015 GB, free: 6.207 MB / 0.698 GB Notification: Performance of sort global known variables: time 8e-08/0.5902, allocations: 0.6875 kB / 1.015 GB, free: 6.207 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0009813/0.5912, allocations: 246.1 kB / 1.015 GB, free: 6.18 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.002853/0.5941, allocations: 2.886 MB / 1.018 GB, free: 4.176 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.002005/0.5961, allocations: 1.832 MB / 1.02 GB, free: 2.824 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 2.655e-06/0.5961, allocations: 0 / 1.02 GB, free: 2.824 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.0009721/0.597, allocations: 0.9662 MB / 1.021 GB, free: 2.09 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001056/0.5981, allocations: 272.6 kB / 1.021 GB, free: 1.992 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01379/0.6119, allocations: 10.29 MB / 1.031 GB, free: 11.07 MB / 0.7137 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003907/0.6123, allocations: 367 kB / 1.031 GB, free: 10.95 MB / 0.7137 GB Notification: Performance of simCode: alias equations: time 0.0005211/0.6128, allocations: 94.31 kB / 1.031 GB, free: 10.93 MB / 0.7137 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003383/0.6131, allocations: 297.3 kB / 1.032 GB, free: 10.71 MB / 0.7137 GB Notification: Performance of SimCode: time 1.213e-06/0.6131, allocations: 4 kB / 1.032 GB, free: 10.71 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.1084/0.7215, allocations: 23.27 MB / 1.054 GB, free: 1.059 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate platform static: time 7.644/8.366, allocations: 8.531 kB / 1.055 GB, free: 1.055 MB / 0.7137 GB " [Timeout remaining time 652] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI_fmu --startTime=0 --stopTime=864000 --stepSize=10 --timeout=50 --tolerance=1e-09 ../Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-09 --interface-type ModelExchange --solver CVode --output-interval 10 ../Pharmacolibrary_Pharmacolibrary_Examples_PK_Lithium_PK_1C_Lithium_CI.fmu) > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI_fmpy.pipe 2>&1) [Timeout 52.5] fmpy timed out simulating the FMU [Calling sys.exit(0), Time elapsed: 13.302748671732843]