Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001024/0.001024, allocations: 105.5 kB / 18.95 MB, free: 1.188 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001034/0.001034, allocations: 216 kB / 22.26 MB, free: 3.574 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.035/1.035, allocations: 230.6 MB / 256 MB, free: 9.613 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.501/1.501, allocations: 334.3 MB / 0.6315 GB, free: 7.988 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.00101/0.00101, allocations: 67.91 kB / 0.8667 GB, free: 7.613 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1838/0.1848, allocations: 112.8 MB / 0.9769 GB, free: 6.531 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00432/0.1891, allocations: 5.102 MB / 0.9819 GB, free: 1.402 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.001815/0.1909, allocations: 1.294 MB / 0.9831 GB, free: 108 kB / 0.6824 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002651/0.1912, allocations: 11.94 kB / 0.9831 GB, free: 96 kB / 0.6824 GB Notification: Performance of NFTyping.typeComponents: time 0.0002495/0.1914, allocations: 126.9 kB / 0.9832 GB, free: 15.96 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0004652/0.1919, allocations: 345.1 kB / 0.9836 GB, free: 15.62 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004022/0.1923, allocations: 267.5 kB / 0.9838 GB, free: 15.37 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.0007422/0.193, allocations: 1.233 MB / 0.985 GB, free: 14.13 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002785/0.1933, allocations: 203.5 kB / 0.9852 GB, free: 13.92 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0002974/0.1936, allocations: 442.5 kB / 0.9857 GB, free: 13.48 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004048/0.194, allocations: 433.9 kB / 0.9861 GB, free: 13.06 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 8.386e-05/0.1941, allocations: 108 kB / 0.9862 GB, free: 12.95 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001/0.1942, allocations: 108 kB / 0.9863 GB, free: 12.85 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 9.759e-05/0.1943, allocations: 195.3 kB / 0.9865 GB, free: 12.66 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0002665/0.1946, allocations: 454.1 kB / 0.9869 GB, free: 12.21 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.401/0.5956, allocations: 1.146 MB / 0.988 GB, free: 20.68 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 6.753e-06/0.5956, allocations: 0 / 0.988 GB, free: 20.68 MB / 0.698 GB Notification: Performance of FrontEnd: time 2.645e-06/0.5956, allocations: 2.406 kB / 0.988 GB, free: 20.68 MB / 0.698 GB Notification: Performance of Transformations before backend: time 5.742e-05/0.5956, allocations: 0 / 0.988 GB, free: 20.68 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001525/0.5972, allocations: 1.392 MB / 0.9894 GB, free: 19.8 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 4.457e-05/0.5972, allocations: 11.86 kB / 0.9894 GB, free: 19.8 MB / 0.698 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 8.496e-05/0.5973, allocations: 109.3 kB / 0.9895 GB, free: 19.77 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001006/0.5974, allocations: 105.2 kB / 0.9896 GB, free: 19.71 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004341/0.5978, allocations: 452.1 kB / 0.99 GB, free: 19.5 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.598e-05/0.5979, allocations: 52.06 kB / 0.9901 GB, free: 19.5 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.555e-05/0.5979, allocations: 86.11 kB / 0.9902 GB, free: 19.49 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008805/0.5988, allocations: 0.8894 MB / 0.991 GB, free: 19.21 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.731e-05/0.5989, allocations: 9.422 kB / 0.991 GB, free: 19.21 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.692e-05/0.5989, allocations: 25.53 kB / 0.9911 GB, free: 19.21 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.203e-05/0.5989, allocations: 15.12 kB / 0.9911 GB, free: 19.21 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008468/0.5997, allocations: 0.7799 MB / 0.9918 GB, free: 19.02 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002257/0.602, allocations: 2.004 MB / 0.9938 GB, free: 18.41 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0008445/0.6028, allocations: 0.7304 MB / 0.9945 GB, free: 18.18 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004674/0.6033, allocations: 481 kB / 0.995 GB, free: 17.99 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 2.578e-05/0.6033, allocations: 7.844 kB / 0.995 GB, free: 17.98 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008578/0.6042, allocations: 1.034 MB / 0.996 GB, free: 17.36 MB / 0.698 GB Notification: Performance of pre-optimization done (n=99): time 3.367e-06/0.6042, allocations: 0.5 kB / 0.996 GB, free: 17.36 MB / 0.698 GB Notification: Performance of matching and sorting (n=105): time 0.003474/0.6077, allocations: 3.226 MB / 0.9991 GB, free: 16.03 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 9.286e-05/0.6078, allocations: 0.5426 MB / 0.9997 GB, free: 15.41 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004926/0.6083, allocations: 0.5288 MB / 1 GB, free: 15.28 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 4.743e-05/0.6083, allocations: 59.48 kB / 1 GB, free: 15.25 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001565/0.6085, allocations: 322 kB / 1.001 GB, free: 15.09 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.000163/0.6086, allocations: 355.4 kB / 1.001 GB, free: 14.88 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001956/0.6088, allocations: 181.6 kB / 1.001 GB, free: 14.86 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 8.725e-05/0.6089, allocations: 396.1 kB / 1.001 GB, free: 14.54 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005761/0.6095, allocations: 0.632 MB / 1.002 GB, free: 14.24 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006361/0.6101, allocations: 0.9308 MB / 1.003 GB, free: 13.49 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00259/0.6127, allocations: 2.467 MB / 1.005 GB, free: 11.64 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.877e-06/0.6127, allocations: 4.625 kB / 1.005 GB, free: 11.64 MB / 0.698 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.001927/0.6147, allocations: 1.712 MB / 1.007 GB, free: 10.6 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 0.00011/0.6148, allocations: 265.2 kB / 1.007 GB, free: 10.31 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.473e-05/0.6148, allocations: 7.625 kB / 1.007 GB, free: 10.31 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.782e-05/0.6148, allocations: 17.72 kB / 1.007 GB, free: 10.31 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005495/0.6154, allocations: 237.4 kB / 1.008 GB, free: 10.3 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.072e-05/0.6154, allocations: 14.72 kB / 1.008 GB, free: 10.3 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004031/0.6158, allocations: 65.28 kB / 1.008 GB, free: 10.28 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.309e-05/0.6158, allocations: 49.91 kB / 1.008 GB, free: 10.27 MB / 0.698 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006104/0.6165, allocations: 0.5548 MB / 1.008 GB, free: 9.84 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001073/0.6166, allocations: 91.53 kB / 1.008 GB, free: 9.793 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.817e-05/0.6167, allocations: 86.38 kB / 1.008 GB, free: 9.727 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.302e-05/0.6167, allocations: 12.47 kB / 1.008 GB, free: 9.723 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.489e-05/0.6167, allocations: 4.562 kB / 1.008 GB, free: 9.719 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.358e-06/0.6167, allocations: 5.484 kB / 1.008 GB, free: 9.719 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002467/0.6192, allocations: 2.212 MB / 1.011 GB, free: 8.449 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.577e-06/0.6192, allocations: 4 kB / 1.011 GB, free: 8.445 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004816/0.6197, allocations: 172 kB / 1.011 GB, free: 8.438 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.3e-06/0.6197, allocations: 4.891 kB / 1.011 GB, free: 8.438 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.478e-05/0.6197, allocations: 35.59 kB / 1.011 GB, free: 8.422 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.37e-06/0.6197, allocations: 4.5 kB / 1.011 GB, free: 8.422 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.685e-06/0.6197, allocations: 1.312 kB / 1.011 GB, free: 8.422 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0023/0.622, allocations: 2.085 MB / 1.013 GB, free: 7.148 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001261/0.6221, allocations: 77.25 kB / 1.013 GB, free: 7.098 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001169/0.6223, allocations: 40.53 kB / 1.013 GB, free: 7.078 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002668/0.6225, allocations: 54.34 kB / 1.013 GB, free: 7.062 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001839/0.6227, allocations: 99.17 kB / 1.013 GB, free: 7.039 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.048e-05/0.6228, allocations: 40.92 kB / 1.013 GB, free: 7.027 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.0004163/0.6232, allocations: 361.3 kB / 1.013 GB, free: 6.855 MB / 0.698 GB Notification: Performance of sort global known variables: time 8e-08/0.6232, allocations: 0.625 kB / 1.013 GB, free: 6.855 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0007027/0.6239, allocations: 261.1 kB / 1.014 GB, free: 6.824 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.002586/0.6265, allocations: 2.712 MB / 1.016 GB, free: 5 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.001783/0.6283, allocations: 1.808 MB / 1.018 GB, free: 3.656 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 2.264e-06/0.6283, allocations: 0.7812 kB / 1.018 GB, free: 3.656 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.0009639/0.6292, allocations: 0.9439 MB / 1.019 GB, free: 2.934 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008642/0.6301, allocations: 254.5 kB / 1.019 GB, free: 2.848 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01033/0.6404, allocations: 9.956 MB / 1.029 GB, free: 12.24 MB / 0.7137 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003591/0.6408, allocations: 377 kB / 1.029 GB, free: 12.13 MB / 0.7137 GB Notification: Performance of simCode: alias equations: time 0.0004351/0.6412, allocations: 91.7 kB / 1.029 GB, free: 12.11 MB / 0.7137 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003328/0.6416, allocations: 314.2 kB / 1.03 GB, free: 11.88 MB / 0.7137 GB Notification: Performance of SimCode: time 1.283e-06/0.6416, allocations: 0 / 1.03 GB, free: 11.88 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.1078/0.7494, allocations: 22.48 MB / 1.052 GB, free: 2.824 MB / 0.7137 GB Notification: Performance of buildModelFMU: Generate platform static: time 7.565/8.315, allocations: 9.453 kB / 1.052 GB, free: 2.816 MB / 0.7137 GB " [Timeout remaining time 652] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites_fmu --startTime=0 --stopTime=864000 --stepSize=1 --timeout=50 --tolerance=1e-09 ../Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites.fmu) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-09 --interface-type ModelExchange --solver CVode --output-interval 1 ../Pharmacolibrary_Pharmacolibrary_Drugs_J_AntiinfectivesForSystemicUse_J05A_DirectActingAntivirals_J05AB16_Remdesivir_Remdesivir_2C_metabolites.fmu) > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites_fmpy.pipe 2>&1) [Timeout 52.5] fmpy timed out simulating the FMU [Calling sys.exit(0), Time elapsed: 18.829123612493277]