Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00097/0.00097, allocations: 105.5 kB / 18.95 MB, free: 1.188 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000899/0.000899, allocations: 219.5 kB / 22.25 MB, free: 3.586 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9828/0.9828, allocations: 230.6 MB / 256 MB, free: 9.617 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.432/1.432, allocations: 334.3 MB / 0.6315 GB, free: 7.965 MB / 442.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK",fmuType="me",version="2.0",platforms={"static"})
"" <> buildModelFMU(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.000999/0.000999, allocations: 75.89 kB / 0.8666 GB, free: 7.773 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1716/0.1726, allocations: 112.8 MB / 0.9767 GB, free: 6.688 MB / 0.6824 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001829/0.1744, allocations: 1.252 MB / 0.978 GB, free: 5.426 MB / 0.6824 GB
Notification: Performance of NFInst.instExpressions: time 0.0002184/0.1746, allocations: 55.8 kB / 0.978 GB, free: 5.371 MB / 0.6824 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.633e-05/0.1747, allocations: 0 / 0.978 GB, free: 5.371 MB / 0.6824 GB
Notification: Performance of NFTyping.typeComponents: time 8.631e-05/0.1748, allocations: 3.938 kB / 0.978 GB, free: 5.367 MB / 0.6824 GB
Notification: Performance of NFTyping.typeBindings: time 3.73e-05/0.1748, allocations: 0 / 0.978 GB, free: 5.367 MB / 0.6824 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000174/0.175, allocations: 23.91 kB / 0.978 GB, free: 5.344 MB / 0.6824 GB
Notification: Performance of NFFlatten.flatten: time 0.0001574/0.1751, allocations: 147.8 kB / 0.9782 GB, free: 5.199 MB / 0.6824 GB
Notification: Performance of NFFlatten.resolveConnections: time 5.139e-05/0.1752, allocations: 4 kB / 0.9782 GB, free: 5.195 MB / 0.6824 GB
Notification: Performance of NFEvalConstants.evaluate: time 9.96e-05/0.1753, allocations: 67.86 kB / 0.9782 GB, free: 5.129 MB / 0.6824 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001497/0.1754, allocations: 79.81 kB / 0.9783 GB, free: 5.051 MB / 0.6824 GB
Notification: Performance of NFPackage.collectConstants: time 2.491e-05/0.1755, allocations: 8 kB / 0.9783 GB, free: 5.043 MB / 0.6824 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.641e-05/0.1755, allocations: 8 kB / 0.9783 GB, free: 5.035 MB / 0.6824 GB
Notification: Performance of NFScalarize.scalarize: time 4.066e-05/0.1755, allocations: 35.88 kB / 0.9784 GB, free: 5 MB / 0.6824 GB
Notification: Performance of NFVerifyModel.verify: time 5.058e-05/0.1756, allocations: 35.88 kB / 0.9784 GB, free: 4.965 MB / 0.6824 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001031/0.1757, allocations: 71.67 kB / 0.9785 GB, free: 4.895 MB / 0.6824 GB
Notification: Performance of FrontEnd - DAE generated: time 5.49e-06/0.1757, allocations: 4 kB / 0.9785 GB, free: 4.891 MB / 0.6824 GB
Notification: Performance of FrontEnd: time 2.214e-06/0.1757, allocations: 0 / 0.9785 GB, free: 4.891 MB / 0.6824 GB
Notification: Performance of Transformations before backend: time 5.59e-06/0.1757, allocations: 0 / 0.9785 GB, free: 4.891 MB / 0.6824 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0009649/0.1766, allocations: 493.9 kB / 0.9789 GB, free: 4.375 MB / 0.6824 GB
Notification: Performance of prepare preOptimizeDAE: time 4.264e-05/0.1767, allocations: 14.11 kB / 0.979 GB, free: 4.363 MB / 0.6824 GB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 3.726e-05/0.1767, allocations: 46.73 kB / 0.979 GB, free: 4.309 MB / 0.6824 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 2.926e-05/0.1768, allocations: 4.891 kB / 0.979 GB, free: 4.305 MB / 0.6824 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001394/0.1769, allocations: 126.4 kB / 0.9791 GB, free: 4.156 MB / 0.6824 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.011e-05/0.1769, allocations: 12.31 kB / 0.9791 GB, free: 4.145 MB / 0.6824 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.561e-05/0.1769, allocations: 4.375 kB / 0.9791 GB, free: 4.141 MB / 0.6824 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003/0.1772, allocations: 151.8 kB / 0.9793 GB, free: 3.98 MB / 0.6824 GB
Notification: Performance of preOpt findStateOrder (simulation): time 8.756e-06/0.1772, allocations: 3.938 kB / 0.9793 GB, free: 3.977 MB / 0.6824 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.528e-05/0.1772, allocations: 4 kB / 0.9793 GB, free: 3.973 MB / 0.6824 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.869e-06/0.1773, allocations: 0 / 0.9793 GB, free: 3.973 MB / 0.6824 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003136/0.1776, allocations: 147.8 kB / 0.9794 GB, free: 3.828 MB / 0.6824 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002747/0.1778, allocations: 244.8 kB / 0.9797 GB, free: 3.543 MB / 0.6824 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001992/0.178, allocations: 98.45 kB / 0.9798 GB, free: 3.438 MB / 0.6824 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001911/0.1782, allocations: 108.7 kB / 0.9799 GB, free: 3.328 MB / 0.6824 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.725e-05/0.1782, allocations: 12.25 kB / 0.9799 GB, free: 3.316 MB / 0.6824 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.991e-05/0.1783, allocations: 30.56 kB / 0.9799 GB, free: 3.277 MB / 0.6824 GB
Notification: Performance of pre-optimization done (n=11): time 9.22e-07/0.1783, allocations: 3.938 kB / 0.9799 GB, free: 3.273 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=11): time 0.0005991/0.1789, allocations: 285.4 kB / 0.9802 GB, free: 2.988 MB / 0.6824 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.574e-05/0.1789, allocations: 51.41 kB / 0.9802 GB, free: 2.926 MB / 0.6824 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.391e-05/0.179, allocations: 109.8 kB / 0.9803 GB, free: 2.809 MB / 0.6824 GB
Notification: Performance of collectPreVariables (initialization): time 1.621e-05/0.179, allocations: 29.7 kB / 0.9804 GB, free: 2.773 MB / 0.6824 GB
Notification: Performance of collectInitialEqns (initialization): time 4.546e-05/0.179, allocations: 88.12 kB / 0.9805 GB, free: 2.684 MB / 0.6824 GB
Notification: Performance of collectInitialBindings (initialization): time 2.793e-05/0.1791, allocations: 43.64 kB / 0.9805 GB, free: 2.641 MB / 0.6824 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.641e-05/0.1791, allocations: 25.7 kB / 0.9805 GB, free: 2.609 MB / 0.6824 GB
Notification: Performance of setup shared object (initialization): time 0.0001068/0.1792, allocations: 322.8 kB / 0.9808 GB, free: 2.285 MB / 0.6824 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001753/0.1794, allocations: 87.8 kB / 0.9809 GB, free: 2.199 MB / 0.6824 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001634/0.1795, allocations: 89.64 kB / 0.981 GB, free: 2.105 MB / 0.6824 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.000321/0.1799, allocations: 173.6 kB / 0.9812 GB, free: 1.93 MB / 0.6824 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.926e-06/0.1799, allocations: 3.938 kB / 0.9812 GB, free: 1.926 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0003809/0.1803, allocations: 218 kB / 0.9814 GB, free: 1.707 MB / 0.6824 GB
Notification: Performance of prepare postOptimizeDAE: time 1.575e-05/0.1803, allocations: 8 kB / 0.9814 GB, free: 1.699 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.194e-06/0.1803, allocations: 3.984 kB / 0.9814 GB, free: 1.695 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.345e-05/0.1803, allocations: 0 / 0.9814 GB, free: 1.695 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002143/0.1805, allocations: 67.97 kB / 0.9815 GB, free: 1.629 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.571e-06/0.1805, allocations: 0 / 0.9815 GB, free: 1.629 MB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001414/0.1807, allocations: 59.88 kB / 0.9815 GB, free: 1.57 MB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.375e-05/0.1807, allocations: 4 kB / 0.9815 GB, free: 1.566 MB / 0.6824 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.272e-05/0.1807, allocations: 126.2 kB / 0.9816 GB, free: 1.434 MB / 0.6824 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.269e-05/0.1808, allocations: 7.953 kB / 0.9816 GB, free: 1.426 MB / 0.6824 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0005016/0.1813, allocations: 305.1 kB / 0.9819 GB, free: 1.121 MB / 0.6824 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.216e-06/0.1813, allocations: 4 kB / 0.9819 GB, free: 1.117 MB / 0.6824 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.348e-06/0.1813, allocations: 0 / 0.9819 GB, free: 1.117 MB / 0.6824 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.376e-06/0.1813, allocations: 0 / 0.9819 GB, free: 1.117 MB / 0.6824 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001384/0.1814, allocations: 188.6 kB / 0.9821 GB, free: 0.8906 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.543e-06/0.1814, allocations: 0 / 0.9821 GB, free: 0.8906 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002029/0.1816, allocations: 84.25 kB / 0.9822 GB, free: 0.8086 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.134e-06/0.1816, allocations: 0 / 0.9822 GB, free: 0.8086 MB / 0.6824 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.464e-05/0.1816, allocations: 7.984 kB / 0.9822 GB, free: 0.8008 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.364e-06/0.1816, allocations: 4 kB / 0.9822 GB, free: 0.7969 MB / 0.6824 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.11e-07/0.1816, allocations: 3.938 kB / 0.9822 GB, free: 0.793 MB / 0.6824 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0004119/0.182, allocations: 288.8 kB / 0.9825 GB, free: 0.4922 MB / 0.6824 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.392e-05/0.1821, allocations: 15.83 kB / 0.9825 GB, free: 488 kB / 0.6824 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.789e-05/0.1821, allocations: 4 kB / 0.9825 GB, free: 484 kB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001381/0.1822, allocations: 51.94 kB / 0.9826 GB, free: 432 kB / 0.6824 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.198e-05/0.1823, allocations: 23.97 kB / 0.9826 GB, free: 408 kB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.152e-05/0.1823, allocations: 7.984 kB / 0.9826 GB, free: 400 kB / 0.6824 GB
Notification: Performance of sorting global known variables: time 3.348e-05/0.1823, allocations: 83.28 kB / 0.9827 GB, free: 316 kB / 0.6824 GB
Notification: Performance of sort global known variables: time 6e-08/0.1823, allocations: 0 / 0.9827 GB, free: 316 kB / 0.6824 GB
Notification: Performance of remove unused functions: time 0.0001578/0.1825, allocations: 32 kB / 0.9827 GB, free: 284 kB / 0.6824 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006224/0.1831, allocations: 0.8191 MB / 0.9835 GB, free: 15.43 MB / 0.698 GB
Notification: Performance of simCode: created initialization part: time 0.0004092/0.1835, allocations: 187.1 kB / 0.9837 GB, free: 15.25 MB / 0.698 GB
Notification: Performance of simCode: created event and clocks part: time 1.743e-06/0.1835, allocations: 11.88 kB / 0.9837 GB, free: 15.24 MB / 0.698 GB
Notification: Performance of simCode: created simulation system equations: time 0.000194/0.1837, allocations: 115.8 kB / 0.9838 GB, free: 15.12 MB / 0.698 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001616/0.1839, allocations: 8 kB / 0.9838 GB, free: 15.12 MB / 0.698 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001796/0.1857, allocations: 1.816 MB / 0.9856 GB, free: 13.21 MB / 0.698 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.6e-05/0.1857, allocations: 87.27 kB / 0.9857 GB, free: 13.11 MB / 0.698 GB
Notification: Performance of simCode: alias equations: time 8.62e-05/0.1858, allocations: 40.33 kB / 0.9857 GB, free: 13.07 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001094/0.1859, allocations: 35.42 kB / 0.9857 GB, free: 13.04 MB / 0.698 GB
Notification: Performance of SimCode: time 6.41e-07/0.1859, allocations: 0 / 0.9857 GB, free: 13.04 MB / 0.698 GB
Notification: Performance of buildModelFMU: Generate the FMI files: time 0.08609/0.272, allocations: 4.668 MB / 0.9903 GB, free: 8.52 MB / 0.698 GB
Notification: Performance of buildModelFMU: Generate platform static: time 7.397/7.669, allocations: 8.719 kB / 0.9903 GB, free: 8.516 MB / 0.698 GB
"
[Timeout remaining time 652]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator  --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK_fmu --startTime=0 --stopTime=864000 --stepSize=17.28 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 52.5]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy_res.csv --start-time 0 --stop-time 864000 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 17.28 ../Pharmacolibrary_Pharmacolibrary_DevModels_Remdesivir_Eq10RemdesivirPK.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK_fmpy.pipe 2>&1) [Timeout 52.5]
[Calling sys.exit(0), Time elapsed: 13.02917902264744]