Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009432/0.0009432, allocations: 101.5 kB / 18.95 MB, free: 1.184 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001087/0.001087, allocations: 221.8 kB / 22.25 MB, free: 3.578 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.092/1.092, allocations: 230.6 MB / 256 MB, free: 9.594 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.597/1.597, allocations: 334.2 MB / 0.6315 GB, free: 7.887 MB / 442.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2",fmuType="me",version="2.0",platforms={"static"})
"" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.00151/0.00151, allocations: 71.89 kB / 0.8666 GB, free: 7.637 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2228/0.2243, allocations: 112.8 MB / 0.9767 GB, free: 6.551 MB / 0.6824 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.9576/1.182, allocations: 53.29 MB / 1.029 GB, free: 2.555 MB / 0.6982 GB
Notification: Performance of NFInst.instExpressions: time 0.006037/1.188, allocations: 5.032 MB / 1.034 GB, free: 15.2 MB / 0.7138 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002613/1.188, allocations: 24 kB / 1.034 GB, free: 15.19 MB / 0.7138 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002134/1.188, allocations: 60.3 kB / 1.034 GB, free: 15.13 MB / 0.7138 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.002287/1.191, allocations: 0.7558 MB / 1.035 GB, free: 14.63 MB / 0.7138 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.002178/1.193, allocations: 0.8569 MB / 1.035 GB, free: 14.07 MB / 0.7138 GB
Notification: Performance of NFFlatten.flatten: time 0.0008186/1.194, allocations: 494.2 kB / 1.036 GB, free: 13.77 MB / 0.7138 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003372/1.194, allocations: 183.5 kB / 1.036 GB, free: 13.64 MB / 0.7138 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002228/1.194, allocations: 174.9 kB / 1.036 GB, free: 13.55 MB / 0.7138 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002495/1.195, allocations: 163.1 kB / 1.036 GB, free: 13.44 MB / 0.7138 GB
Notification: Performance of NFPackage.collectConstants: time 4.001e-05/1.195, allocations: 34.28 kB / 1.036 GB, free: 13.43 MB / 0.7138 GB
Notification: Performance of NFFlatten.collectFunctions: time 4.854e-05/1.195, allocations: 29.78 kB / 1.036 GB, free: 13.43 MB / 0.7138 GB
Notification: Performance of NFScalarize.scalarize: time 9.589e-05/1.195, allocations: 71.3 kB / 1.036 GB, free: 13.38 MB / 0.7138 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001544/1.195, allocations: 167.3 kB / 1.037 GB, free: 13.27 MB / 0.7138 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005311/1.195, allocations: 481.5 kB / 1.037 GB, free: 12.95 MB / 0.7138 GB
Notification: Performance of FrontEnd - DAE generated: time 6.733e-06/1.195, allocations: 4 kB / 1.037 GB, free: 12.94 MB / 0.7138 GB
Notification: Performance of FrontEnd: time 4.038e-06/1.195, allocations: 1.219 kB / 1.037 GB, free: 12.94 MB / 0.7138 GB
Notification: Performance of Transformations before backend: time 1.046e-05/1.195, allocations: 0 / 1.037 GB, free: 12.94 MB / 0.7138 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0009584/1.196, allocations: 0.6253 MB / 1.038 GB, free: 12.41 MB / 0.7138 GB
Notification: Performance of prepare preOptimizeDAE: time 5.774e-05/1.196, allocations: 9.781 kB / 1.038 GB, free: 12.41 MB / 0.7138 GB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 6.718e-05/1.196, allocations: 58.17 kB / 1.038 GB, free: 12.35 MB / 0.7138 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 7.922e-05/1.197, allocations: 50.62 kB / 1.038 GB, free: 12.32 MB / 0.7138 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005186/1.197, allocations: 334.6 kB / 1.038 GB, free: 12.05 MB / 0.7138 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.227e-05/1.197, allocations: 28.47 kB / 1.038 GB, free: 12.04 MB / 0.7138 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.745e-05/1.197, allocations: 31.28 kB / 1.038 GB, free: 12.02 MB / 0.7138 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003451/1.198, allocations: 209.8 kB / 1.038 GB, free: 11.89 MB / 0.7138 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.681e-05/1.198, allocations: 5.016 kB / 1.038 GB, free: 11.89 MB / 0.7138 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.09e-05/1.198, allocations: 10.34 kB / 1.038 GB, free: 11.88 MB / 0.7138 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.984e-05/1.198, allocations: 5.875 kB / 1.038 GB, free: 11.88 MB / 0.7138 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002382/1.198, allocations: 146.1 kB / 1.039 GB, free: 11.81 MB / 0.7138 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001196/1.199, allocations: 0.7021 MB / 1.039 GB, free: 11.27 MB / 0.7138 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002444/1.199, allocations: 156.1 kB / 1.039 GB, free: 11.18 MB / 0.7138 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001022/1.199, allocations: 80.64 kB / 1.039 GB, free: 11.14 MB / 0.7138 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.252e-05/1.199, allocations: 3.312 kB / 1.039 GB, free: 11.14 MB / 0.7138 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.006e-05/1.199, allocations: 32.03 kB / 1.039 GB, free: 11.1 MB / 0.7138 GB
Notification: Performance of pre-optimization done (n=20): time 1.333e-06/1.199, allocations: 0 / 1.039 GB, free: 11.1 MB / 0.7138 GB
Notification: Performance of matching and sorting (n=20): time 0.0003831/1.2, allocations: 250 kB / 1.04 GB, free: 10.96 MB / 0.7138 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.379e-05/1.2, allocations: 53.56 kB / 1.04 GB, free: 10.9 MB / 0.7138 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002709/1.2, allocations: 347.4 kB / 1.04 GB, free: 10.67 MB / 0.7138 GB
Notification: Performance of collectPreVariables (initialization): time 1.776e-05/1.2, allocations: 35.33 kB / 1.04 GB, free: 10.63 MB / 0.7138 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001115/1.2, allocations: 224.3 kB / 1.04 GB, free: 10.43 MB / 0.7138 GB
Notification: Performance of collectInitialBindings (initialization): time 4.416e-05/1.2, allocations: 69.36 kB / 1.04 GB, free: 10.37 MB / 0.7138 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.754e-05/1.2, allocations: 71.88 kB / 1.04 GB, free: 10.32 MB / 0.7138 GB
Notification: Performance of setup shared object (initialization): time 9.825e-05/1.2, allocations: 343 kB / 1.041 GB, free: 9.98 MB / 0.7138 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001078/1.201, allocations: 75.48 kB / 1.041 GB, free: 9.945 MB / 0.7138 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001269/1.201, allocations: 130.8 kB / 1.041 GB, free: 9.848 MB / 0.7138 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0007029/1.201, allocations: 431.1 kB / 1.041 GB, free: 9.605 MB / 0.7138 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.53e-06/1.201, allocations: 5.062 kB / 1.041 GB, free: 9.602 MB / 0.7138 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.000366/1.202, allocations: 299.5 kB / 1.042 GB, free: 9.445 MB / 0.7138 GB
Notification: Performance of prepare postOptimizeDAE: time 1.969e-05/1.202, allocations: 8.281 kB / 1.042 GB, free: 9.445 MB / 0.7138 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.256e-06/1.202, allocations: 5.484 kB / 1.042 GB, free: 9.441 MB / 0.7138 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.657e-05/1.202, allocations: 4 kB / 1.042 GB, free: 9.441 MB / 0.7138 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001853/1.202, allocations: 69.44 kB / 1.042 GB, free: 9.426 MB / 0.7138 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.154e-06/1.202, allocations: 3.25 kB / 1.042 GB, free: 9.426 MB / 0.7138 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 8.402e-05/1.202, allocations: 30.34 kB / 1.042 GB, free: 9.402 MB / 0.7138 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.498e-05/1.202, allocations: 13.77 kB / 1.042 GB, free: 9.398 MB / 0.7138 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.000139/1.202, allocations: 154.5 kB / 1.042 GB, free: 9.254 MB / 0.7138 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.269e-05/1.202, allocations: 34.58 kB / 1.042 GB, free: 9.234 MB / 0.7138 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002624/1.203, allocations: 207.9 kB / 1.042 GB, free: 9.102 MB / 0.7138 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.497e-06/1.203, allocations: 5.531 kB / 1.042 GB, free: 9.098 MB / 0.7138 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.741e-06/1.203, allocations: 0 / 1.042 GB, free: 9.098 MB / 0.7138 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.771e-06/1.203, allocations: 3.984 kB / 1.042 GB, free: 9.094 MB / 0.7138 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002931/1.203, allocations: 312.7 kB / 1.043 GB, free: 8.828 MB / 0.7138 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.003e-06/1.203, allocations: 0 / 1.043 GB, free: 8.828 MB / 0.7138 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001386/1.203, allocations: 35.14 kB / 1.043 GB, free: 8.82 MB / 0.7138 GB
Notification: Performance of postOpt tearingSystem (simulation): time 3.507e-06/1.203, allocations: 1.219 kB / 1.043 GB, free: 8.82 MB / 0.7138 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.493e-05/1.203, allocations: 10.44 kB / 1.043 GB, free: 8.812 MB / 0.7138 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.964e-06/1.203, allocations: 0 / 1.043 GB, free: 8.812 MB / 0.7138 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.587e-06/1.203, allocations: 4.953 kB / 1.043 GB, free: 8.809 MB / 0.7138 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0004263/1.203, allocations: 379.9 kB / 1.043 GB, free: 8.551 MB / 0.7138 GB
Notification: Performance of postOpt removeConstants (simulation): time 9.041e-05/1.203, allocations: 49.09 kB / 1.043 GB, free: 8.516 MB / 0.7138 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.025e-05/1.204, allocations: 5.141 kB / 1.043 GB, free: 8.512 MB / 0.7138 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 6.792e-05/1.204, allocations: 5.188 kB / 1.043 GB, free: 8.508 MB / 0.7138 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 4.714e-05/1.204, allocations: 9.297 kB / 1.043 GB, free: 8.504 MB / 0.7138 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.528e-06/1.204, allocations: 7.219 kB / 1.043 GB, free: 8.5 MB / 0.7138 GB
Notification: Performance of sorting global known variables: time 0.0001966/1.204, allocations: 228.1 kB / 1.043 GB, free: 8.355 MB / 0.7138 GB
Notification: Performance of sort global known variables: time 5e-08/1.204, allocations: 0 / 1.043 GB, free: 8.355 MB / 0.7138 GB
Notification: Performance of remove unused functions: time 0.0002805/1.204, allocations: 89.19 kB / 1.043 GB, free: 8.332 MB / 0.7138 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006379/1.205, allocations: 0.9056 MB / 1.044 GB, free: 7.547 MB / 0.7138 GB
Notification: Performance of simCode: created initialization part: time 0.0003408/1.205, allocations: 189.5 kB / 1.044 GB, free: 7.465 MB / 0.7138 GB
Notification: Performance of simCode: created event and clocks part: time 2.014e-06/1.205, allocations: 0 / 1.044 GB, free: 7.465 MB / 0.7138 GB
Notification: Performance of simCode: created simulation system equations: time 9.019e-05/1.205, allocations: 70.19 kB / 1.044 GB, free: 7.438 MB / 0.7138 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003694/1.206, allocations: 86.97 kB / 1.045 GB, free: 7.391 MB / 0.7138 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002843/1.208, allocations: 2.922 MB / 1.047 GB, free: 5.246 MB / 0.7138 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002006/1.209, allocations: 197.5 kB / 1.048 GB, free: 5.113 MB / 0.7138 GB
Notification: Performance of simCode: alias equations: time 0.0001299/1.209, allocations: 37.92 kB / 1.048 GB, free: 5.094 MB / 0.7138 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001405/1.209, allocations: 116 kB / 1.048 GB, free: 5 MB / 0.7138 GB
Notification: Performance of SimCode: time 9.61e-07/1.209, allocations: 1.625 kB / 1.048 GB, free: 5 MB / 0.7138 GB
Notification: Performance of buildModelFMU: Generate the FMI files: time 0.08506/1.294, allocations: 7.678 MB / 1.055 GB, free: 1.023 MB / 0.7138 GB
Notification: Performance of buildModelFMU: Generate platform static: time 7.134/8.428, allocations: 4 kB / 1.055 GB, free: 1.02 MB / 0.7138 GB
"
[Timeout remaining time 651]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator  --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2_fmu --startTime=0 --stopTime=5 --stepSize=0.005 --timeout=50 --tolerance=1e-12 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 52.5]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy_res.csv --start-time 0 --stop-time 5 --timeout 50 --relative-tolerance 1e-12 --interface-type ModelExchange --solver CVode --output-interval 0.005 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics2.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2_fmpy.pipe 2>&1) [Timeout 52.5]
fmpy timed out simulating the FMU
[Calling sys.exit(0), Time elapsed: 13.366132849827409]