Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008123/0.0008123, allocations: 105.5 kB / 18.95 MB, free: 1.184 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000845/0.000845, allocations: 216.7 kB / 22.25 MB, free: 3.574 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.092/1.092, allocations: 230.6 MB / 256 MB, free: 9.625 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.533/1.533, allocations: 334.2 MB / 0.6315 GB, free: 7.988 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,fileNamePrefix="Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001415/0.001415, allocations: 71.88 kB / 0.8666 GB, free: 7.871 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2274/0.2288, allocations: 112.8 MB / 0.9767 GB, free: 6.789 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.00145/0.2302, allocations: 0.5103 MB / 0.9772 GB, free: 6.281 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.0001597/0.2304, allocations: 23.89 kB / 0.9773 GB, free: 6.258 MB / 0.6824 GB Notification: Performance of NFInst.updateImplicitVariability: time 2.497e-05/0.2304, allocations: 0 / 0.9773 GB, free: 6.258 MB / 0.6824 GB Notification: Performance of NFTyping.typeComponents: time 2.029e-05/0.2304, allocations: 3.938 kB / 0.9773 GB, free: 6.254 MB / 0.6824 GB Notification: Performance of NFTyping.typeBindings: time 4.474e-05/0.2305, allocations: 4 kB / 0.9773 GB, free: 6.25 MB / 0.6824 GB Notification: Performance of NFTyping.typeClassSections: time 0.000129/0.2306, allocations: 11.92 kB / 0.9773 GB, free: 6.238 MB / 0.6824 GB Notification: Performance of NFFlatten.flatten: time 6.229e-05/0.2307, allocations: 19.88 kB / 0.9773 GB, free: 6.219 MB / 0.6824 GB Notification: Performance of NFFlatten.resolveConnections: time 5.824e-05/0.2307, allocations: 3.984 kB / 0.9773 GB, free: 6.215 MB / 0.6824 GB Notification: Performance of NFEvalConstants.evaluate: time 2.327e-05/0.2307, allocations: 7.984 kB / 0.9773 GB, free: 6.207 MB / 0.6824 GB Notification: Performance of NFSimplifyModel.simplify: time 7.766e-05/0.2308, allocations: 11.92 kB / 0.9773 GB, free: 6.195 MB / 0.6824 GB Notification: Performance of NFPackage.collectConstants: time 1.594e-05/0.2308, allocations: 0 / 0.9773 GB, free: 6.195 MB / 0.6824 GB Notification: Performance of NFFlatten.collectFunctions: time 9.598e-06/0.2309, allocations: 4 kB / 0.9773 GB, free: 6.191 MB / 0.6824 GB Notification: Performance of NFScalarize.scalarize: time 1.887e-05/0.2309, allocations: 4 kB / 0.9773 GB, free: 6.188 MB / 0.6824 GB Notification: Performance of NFVerifyModel.verify: time 2.851e-05/0.2309, allocations: 11.92 kB / 0.9773 GB, free: 6.176 MB / 0.6824 GB Notification: Performance of NFConvertDAE.convert: time 7.464e-05/0.231, allocations: 7.922 kB / 0.9773 GB, free: 6.168 MB / 0.6824 GB Notification: Performance of FrontEnd - DAE generated: time 5.6e-06/0.231, allocations: 4 kB / 0.9773 GB, free: 6.164 MB / 0.6824 GB Notification: Performance of FrontEnd: time 2.295e-06/0.231, allocations: 4 kB / 0.9773 GB, free: 6.16 MB / 0.6824 GB Notification: Performance of Transformations before backend: time 6.692e-06/0.231, allocations: 0 / 0.9773 GB, free: 6.16 MB / 0.6824 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3 * Number of variables: 3 Notification: Performance of Generate backend data structure: time 0.0003969/0.2314, allocations: 262.2 kB / 0.9776 GB, free: 5.871 MB / 0.6824 GB Notification: Performance of prepare preOptimizeDAE: time 4.73e-05/0.2314, allocations: 14.11 kB / 0.9776 GB, free: 5.859 MB / 0.6824 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 3.401e-05/0.2315, allocations: 34.73 kB / 0.9776 GB, free: 5.816 MB / 0.6824 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 2.47e-05/0.2315, allocations: 0.9375 kB / 0.9776 GB, free: 5.816 MB / 0.6824 GB Notification: Performance of preOpt evaluateParameters (simulation): time 8.917e-05/0.2316, allocations: 118.5 kB / 0.9778 GB, free: 5.676 MB / 0.6824 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.929e-06/0.2316, allocations: 384 / 0.9778 GB, free: 5.676 MB / 0.6824 GB Notification: Performance of preOpt expandDerOperator (simulation): time 1.931e-05/0.2316, allocations: 384 / 0.9778 GB, free: 5.676 MB / 0.6824 GB Notification: Performance of preOpt clockPartitioning (simulation): time 9.612e-05/0.2317, allocations: 46.25 kB / 0.9778 GB, free: 5.625 MB / 0.6824 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.825e-06/0.2317, allocations: 3.938 kB / 0.9778 GB, free: 5.621 MB / 0.6824 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.904e-06/0.2317, allocations: 0 / 0.9778 GB, free: 5.621 MB / 0.6824 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.56e-06/0.2317, allocations: 0 / 0.9778 GB, free: 5.621 MB / 0.6824 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 2.79e-05/0.2318, allocations: 7.938 kB / 0.9778 GB, free: 5.613 MB / 0.6824 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001423/0.2319, allocations: 128.8 kB / 0.9779 GB, free: 5.445 MB / 0.6824 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0002898/0.2322, allocations: 62.61 kB / 0.978 GB, free: 5.375 MB / 0.6824 GB Notification: Performance of preOpt resolveLoops (simulation): time 2.578e-05/0.2322, allocations: 12.86 kB / 0.978 GB, free: 5.359 MB / 0.6824 GB Notification: Performance of preOpt evalFunc (simulation): time 1.204e-05/0.2322, allocations: 4 kB / 0.978 GB, free: 5.355 MB / 0.6824 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.869e-05/0.2322, allocations: 30.56 kB / 0.978 GB, free: 5.316 MB / 0.6824 GB Notification: Performance of pre-optimization done (n=3): time 1.172e-06/0.2322, allocations: 4 kB / 0.978 GB, free: 5.312 MB / 0.6824 GB Notification: Performance of matching and sorting (n=3): time 0.0001498/0.2324, allocations: 61.66 kB / 0.9781 GB, free: 5.246 MB / 0.6824 GB Notification: Performance of inlineWhenForInitialization (initialization): time 3.076e-05/0.2324, allocations: 55.41 kB / 0.9782 GB, free: 5.18 MB / 0.6824 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.289e-05/0.2325, allocations: 105.8 kB / 0.9783 GB, free: 5.066 MB / 0.6824 GB Notification: Performance of collectPreVariables (initialization): time 0.0002207/0.2327, allocations: 25.7 kB / 0.9783 GB, free: 5.035 MB / 0.6824 GB Notification: Performance of collectInitialEqns (initialization): time 3.454e-05/0.2327, allocations: 88.14 kB / 0.9784 GB, free: 4.945 MB / 0.6824 GB Notification: Performance of collectInitialBindings (initialization): time 3.526e-05/0.2328, allocations: 11.89 kB / 0.9784 GB, free: 4.934 MB / 0.6824 GB Notification: Performance of simplifyInitialFunctions (initialization): time 3.25e-05/0.2328, allocations: 17.72 kB / 0.9784 GB, free: 4.91 MB / 0.6824 GB Notification: Performance of setup shared object (initialization): time 8.873e-05/0.2329, allocations: 314.8 kB / 0.9787 GB, free: 4.594 MB / 0.6824 GB Notification: Performance of preBalanceInitialSystem (initialization): time 1.843e-05/0.2329, allocations: 4 kB / 0.9787 GB, free: 4.59 MB / 0.6824 GB Notification: Performance of partitionIndependentBlocks (initialization): time 1.63e-05/0.2329, allocations: 19.98 kB / 0.9787 GB, free: 4.57 MB / 0.6824 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0002176/0.2332, allocations: 72.69 kB / 0.9788 GB, free: 4.496 MB / 0.6824 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.465e-06/0.2332, allocations: 0 / 0.9788 GB, free: 4.496 MB / 0.6824 GB Notification: Performance of matching and sorting (n=6) (initialization): time 7.715e-05/0.2332, allocations: 65.59 kB / 0.9788 GB, free: 4.426 MB / 0.6824 GB Notification: Performance of prepare postOptimizeDAE: time 1.504e-05/0.2332, allocations: 7.938 kB / 0.9789 GB, free: 4.418 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.701e-06/0.2333, allocations: 0 / 0.9789 GB, free: 4.418 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.347e-05/0.2333, allocations: 240 / 0.9789 GB, free: 4.418 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 4.142e-05/0.2333, allocations: 11.98 kB / 0.9789 GB, free: 4.406 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 5.992e-06/0.2333, allocations: 3.938 kB / 0.9789 GB, free: 4.402 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.442e-05/0.2333, allocations: 8 kB / 0.9789 GB, free: 4.395 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.743e-06/0.2333, allocations: 4 kB / 0.9789 GB, free: 4.391 MB / 0.6824 GB Warning: Assuming fixed start value for the following 3 variables: V:VARIABLE(start = 10.0 fixed = true ) \"count of viral particles\" type: Real I:VARIABLE(start = 0.0 fixed = true ) \"count of infectious cells\" type: Real T:VARIABLE(start = 1e6 fixed = true ) \"count of target(susceptible) cells\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 1 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (6): * Single equations (assignments): 6 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001555/0.2335, allocations: 121.6 kB / 0.979 GB, free: 4.266 MB / 0.6824 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.227e-06/0.2335, allocations: 7.891 kB / 0.979 GB, free: 4.258 MB / 0.6824 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.959e-05/0.2335, allocations: 11.67 kB / 0.979 GB, free: 4.242 MB / 0.6824 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.906e-06/0.2335, allocations: 4 kB / 0.979 GB, free: 4.238 MB / 0.6824 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.969e-06/0.2335, allocations: 4 kB / 0.979 GB, free: 4.234 MB / 0.6824 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.025e-06/0.2335, allocations: 0 / 0.979 GB, free: 4.234 MB / 0.6824 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 8.704e-05/0.2336, allocations: 121.1 kB / 0.9791 GB, free: 4.074 MB / 0.6824 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.723e-06/0.2336, allocations: 0 / 0.9791 GB, free: 4.074 MB / 0.6824 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 5.818e-05/0.2337, allocations: 15.98 kB / 0.9792 GB, free: 4.059 MB / 0.6824 GB Notification: Performance of postOpt tearingSystem (simulation): time 2.765e-06/0.2337, allocations: 3.938 kB / 0.9792 GB, free: 4.055 MB / 0.6824 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.385e-06/0.2337, allocations: 0 / 0.9792 GB, free: 4.055 MB / 0.6824 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.663e-06/0.2337, allocations: 0 / 0.9792 GB, free: 4.055 MB / 0.6824 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.833e-06/0.2337, allocations: 3.984 kB / 0.9792 GB, free: 4.051 MB / 0.6824 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001429/0.2338, allocations: 85.12 kB / 0.9792 GB, free: 3.949 MB / 0.6824 GB Notification: Performance of postOpt removeConstants (simulation): time 1.05e-05/0.2339, allocations: 7.984 kB / 0.9793 GB, free: 3.941 MB / 0.6824 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.354e-05/0.2339, allocations: 11.94 kB / 0.9793 GB, free: 3.93 MB / 0.6824 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 1.185e-05/0.2339, allocations: 0 / 0.9793 GB, free: 3.93 MB / 0.6824 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 2.063e-05/0.2339, allocations: 3.938 kB / 0.9793 GB, free: 3.926 MB / 0.6824 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.737e-06/0.2339, allocations: 4 kB / 0.9793 GB, free: 3.922 MB / 0.6824 GB Notification: Performance of sorting global known variables: time 2.935e-05/0.2339, allocations: 83.27 kB / 0.9794 GB, free: 3.84 MB / 0.6824 GB Notification: Performance of sort global known variables: time 6e-08/0.2339, allocations: 0 / 0.9794 GB, free: 3.84 MB / 0.6824 GB Notification: Performance of remove unused functions: time 0.0001205/0.2341, allocations: 8 kB / 0.9794 GB, free: 3.832 MB / 0.6824 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 3 (V,I,T) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (3): * Single equations (assignments): 3 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000312/0.2344, allocations: 0.6163 MB / 0.98 GB, free: 3.184 MB / 0.6824 GB Notification: Performance of simCode: created initialization part: time 9.549e-05/0.2345, allocations: 27.97 kB / 0.98 GB, free: 3.156 MB / 0.6824 GB Notification: Performance of simCode: created event and clocks part: time 2.525e-06/0.2345, allocations: 0 / 0.98 GB, free: 3.156 MB / 0.6824 GB Notification: Performance of simCode: created simulation system equations: time 1.571e-05/0.2345, allocations: 23.92 kB / 0.98 GB, free: 3.133 MB / 0.6824 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.000122/0.2346, allocations: 0 / 0.98 GB, free: 3.133 MB / 0.6824 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008323/0.2354, allocations: 1.197 MB / 0.9812 GB, free: 1.855 MB / 0.6824 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 4.236e-05/0.2355, allocations: 63.34 kB / 0.9812 GB, free: 1.773 MB / 0.6824 GB Notification: Performance of simCode: alias equations: time 1.519e-05/0.2355, allocations: 0 / 0.9812 GB, free: 1.773 MB / 0.6824 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 3.681e-05/0.2355, allocations: 11.44 kB / 0.9813 GB, free: 1.762 MB / 0.6824 GB Notification: Performance of SimCode: time 8.32e-07/0.2355, allocations: 0 / 0.9813 GB, free: 1.762 MB / 0.6824 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.09171/0.3272, allocations: 1.803 MB / 0.983 GB, free: 96 kB / 0.6824 GB Notification: Performance of buildModelFMU: Generate platform static: time 7.089/7.416, allocations: 4.062 kB / 0.983 GB, free: 92 kB / 0.6824 GB " [Timeout remaining time 653] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & (cd run_OMSimulator && /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --stripRoot --tempDir=temp_Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1_fmu --startTime=0 --stopTime=1 --stepSize=0.002 --timeout=50 --tolerance=1e-06 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 52.5] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe >> /var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.sim & (cd run_fmpy && python3 -m fmpy simulate --output-file ../Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy_res.csv --start-time 0 --stop-time 1 --timeout 50 --relative-tolerance 1e-06 --interface-type ModelExchange --solver CVode --output-interval 0.002 ../Pharmacolibrary_Pharmacolibrary_DevModels_Palivizumab_ViralInfectionDynamics1.fmu) > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1_fmpy.pipe 2>&1) [Timeout 52.5] [Calling sys.exit(0), Time elapsed: 12.357776721008122]