Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001133/0.001133, allocations: 105.5 kB / 18.95 MB, free: 1.18 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001241/0.001241, allocations: 215.5 kB / 22.25 MB, free: 3.73 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.091/1.091, allocations: 230.6 MB / 256 MB, free: 9.609 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/package.mo): time 0.1033/0.1033, allocations: 24.01 MB / 336.4 MB, free: 9.945 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: setCommandLineOptions("--fmiFlags=s:cvode")
Running command: "" <> buildModelFMU(Chemical.Examples.SimpleReactionsWithJunction2,fileNamePrefix="Chemical_master_Chemical_Examples_SimpleReactionsWithJunction2",fmuType="me_cs",version="2.0",platforms={"static"})
"" <> buildModelFMU(Chemical.Examples.SimpleReactionsWithJunction2,fileNamePrefix="Chemical_master_Chemical_Examples_SimpleReactionsWithJunction2",fmuType="me_cs",version="2.0",platforms={"static"}) [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002179/0.002179, allocations: 79.88 kB / 472.9 MB, free: 16.2 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1195/0.1217, allocations: 59.89 MB / 0.5203 GB, free: 4.199 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.4795/0.6011, allocations: 44.27 MB / 0.5635 GB, free: 2.934 MB / 410.8 MB
Notification: Performance of NFInst.instExpressions: time 0.01679/0.6179, allocations: 11.11 MB / 0.5744 GB, free: 16 kB / 410.8 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.004743/0.6227, allocations: 99.42 kB / 0.5745 GB, free: 15.96 MB / 426.8 MB
Notification: Performance of NFTyping.typeComponents: time 0.007174/0.6298, allocations: 2.176 MB / 0.5766 GB, free: 14.88 MB / 426.8 MB
Notification: Performance of NFTyping.typeBindings: time 0.008376/0.6382, allocations: 1.94 MB / 0.5785 GB, free: 13.61 MB / 426.8 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01021/0.6484, allocations: 4.301 MB / 0.5827 GB, free: 11.03 MB / 426.8 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.1-master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.01174/0.6602, allocations: 4.897 MB / 0.5875 GB, free: 8.223 MB / 426.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.00196/0.6621, allocations: 1.326 MB / 0.5887 GB, free: 7.379 MB / 426.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004223/0.6664, allocations: 2.146 MB / 0.5908 GB, free: 6.168 MB / 426.8 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004938/0.6713, allocations: 2.682 MB / 0.5935 GB, free: 4.516 MB / 426.8 MB
Notification: Performance of NFPackage.collectConstants: time 0.001882/0.6732, allocations: 0.5304 MB / 0.594 GB, free: 4.516 MB / 426.8 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.007698/0.6809, allocations: 2.3 MB / 0.5962 GB, free: 3.73 MB / 426.8 MB
Notification: Performance of NFScalarize.scalarize: time 0.002726/0.6836, allocations: 1.662 MB / 0.5978 GB, free: 2.539 MB / 426.8 MB
Notification: Performance of NFVerifyModel.verify: time 0.005069/0.6887, allocations: 2.185 MB / 0.6 GB, free: 1.152 MB / 426.8 MB
Notification: Performance of NFConvertDAE.convert: time 0.01283/0.7015, allocations: 8.869 MB / 0.6086 GB, free: 11.02 MB / 442.8 MB
Notification: Performance of FrontEnd - DAE generated: time 5.781e-06/0.7015, allocations: 0 / 0.6086 GB, free: 11.02 MB / 442.8 MB
Notification: Performance of FrontEnd: time 2.215e-06/0.7015, allocations: 3.5 kB / 0.6086 GB, free: 11.02 MB / 442.8 MB
Notification: Performance of Transformations before backend: time 0.0002959/0.7018, allocations: 0 / 0.6086 GB, free: 11.02 MB / 442.8 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.01126/0.7131, allocations: 6.178 MB / 0.6147 GB, free: 6.812 MB / 442.8 MB
Notification: Performance of prepare preOptimizeDAE: time 7.34e-05/0.7131, allocations: 14.7 kB / 0.6147 GB, free: 6.809 MB / 442.8 MB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.001469/0.7146, allocations: 0.7144 MB / 0.6154 GB, free: 6.277 MB / 442.8 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003253/0.7179, allocations: 1.323 MB / 0.6167 GB, free: 5.598 MB / 442.8 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003766/0.7216, allocations: 2.641 MB / 0.6193 GB, free: 3.605 MB / 442.8 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0004312/0.7221, allocations: 0.7283 MB / 0.62 GB, free: 2.992 MB / 442.8 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005061/0.7226, allocations: 456.2 kB / 0.6204 GB, free: 2.84 MB / 442.8 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01361/0.7362, allocations: 14.54 MB / 0.6346 GB, free: 8.281 MB / 458.8 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.81e-05/0.7362, allocations: 3.938 kB / 0.6346 GB, free: 8.277 MB / 458.8 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002419/0.7365, allocations: 184 kB / 0.6348 GB, free: 8.098 MB / 458.8 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003867/0.7369, allocations: 0.5449 MB / 0.6353 GB, free: 7.551 MB / 458.8 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01981/0.7567, allocations: 23.24 MB / 0.658 GB, free: 308 kB / 474.8 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.04164/0.7983, allocations: 30.87 MB / 0.6882 GB, free: 1.273 MB / 0.4949 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.00553/0.8039, allocations: 4.571 MB / 0.6926 GB, free: 12.69 MB / 0.5105 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.004579/0.8084, allocations: 3.932 MB / 0.6965 GB, free: 8.754 MB / 0.5105 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.02577/0.8342, allocations: 20.04 MB / 0.716 GB, free: 4.648 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.701e-05/0.8342, allocations: 56.5 kB / 0.7161 GB, free: 4.586 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=289): time 5.67e-06/0.8343, allocations: 4 kB / 0.7161 GB, free: 4.582 MB / 0.5262 GB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.0297532975673676]