Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009832/0.0009832, allocations: 100.4 kB / 19.7 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001088/0.001088, allocations: 215.3 kB / 23 MB, free: 2.945 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9732/0.9732, allocations: 230.6 MB / 256.8 MB, free: 9.59 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.725/1.725, allocations: 334.3 MB / 0.6323 GB, free: 7.906 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001784/0.001784, allocations: 72.97 kB / 0.8671 GB, free: 7.887 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1886/0.1904, allocations: 112.8 MB / 0.9773 GB, free: 6.809 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.007982/0.1983, allocations: 10.24 MB / 0.9873 GB, free: 12.52 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.3979/0.5962, allocations: 2.449 MB / 0.9897 GB, free: 17.8 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0009514/0.5972, allocations: 23.88 kB / 0.9897 GB, free: 17.8 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0004675/0.5976, allocations: 301.5 kB / 0.99 GB, free: 17.8 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0009998/0.5986, allocations: 0.7488 MB / 0.9907 GB, free: 17.78 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008224/0.5995, allocations: 0.5842 MB / 0.9913 GB, free: 17.76 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001359/0.6008, allocations: 2.755 MB / 0.994 GB, free: 17.11 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002122/0.6029, allocations: 2.973 MB / 0.9969 GB, free: 16.76 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001314/0.6042, allocations: 1.86 MB / 0.9987 GB, free: 16.58 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.00245/0.6067, allocations: 2.097 MB / 1.001 GB, free: 16.23 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0005184/0.6072, allocations: 425.4 kB / 1.001 GB, free: 16.23 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0006406/0.6079, allocations: 426.7 kB / 1.002 GB, free: 16.23 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.000564/0.6084, allocations: 0.9218 MB / 1.002 GB, free: 15.7 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.00112/0.6095, allocations: 1.437 MB / 1.004 GB, free: 15 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.002692/0.6122, allocations: 3.507 MB / 1.007 GB, free: 13.68 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 4.198e-06/0.6122, allocations: 0 / 1.007 GB, free: 13.68 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.784e-06/0.6122, allocations: 0.5 kB / 1.007 GB, free: 13.68 MB / 0.698 GB Notification: Performance of Transformations before backend: time 2.71e-05/0.6123, allocations: 0 / 1.007 GB, free: 13.68 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.00442/0.6167, allocations: 2.834 MB / 1.01 GB, free: 12.05 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.567e-05/0.6167, allocations: 12.42 kB / 1.01 GB, free: 12.05 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003812/0.6171, allocations: 230.5 kB / 1.01 GB, free: 11.93 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001434/0.6185, allocations: 1.128 MB / 1.011 GB, free: 11.26 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001146/0.6187, allocations: 136.8 kB / 1.012 GB, free: 11.2 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003764/0.619, allocations: 200.9 kB / 1.012 GB, free: 11.13 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.004541/0.6236, allocations: 3.775 MB / 1.015 GB, free: 9.281 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.417e-05/0.6236, allocations: 17.53 kB / 1.015 GB, free: 9.27 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002406/0.6239, allocations: 73.72 kB / 1.015 GB, free: 9.215 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.833e-05/0.6239, allocations: 46.23 kB / 1.016 GB, free: 9.211 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00466/0.6286, allocations: 3.643 MB / 1.019 GB, free: 7.25 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01065/0.6392, allocations: 7.701 MB / 1.027 GB, free: 1.773 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002566/0.6418, allocations: 1.738 MB / 1.028 GB, free: 0.7969 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001615/0.6434, allocations: 1.249 MB / 1.03 GB, free: 32 kB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 6.668e-05/0.6435, allocations: 30.42 kB / 1.03 GB, free: 24 kB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.002185/0.6456, allocations: 2.14 MB / 1.032 GB, free: 14.47 MB / 0.7137 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003876/0.6495, allocations: 1.774 MB / 1.033 GB, free: 13.89 MB / 0.7137 GB Notification: Performance of pre-optimization done (n=198): time 4.238e-06/0.6495, allocations: 0 / 1.033 GB, free: 13.89 MB / 0.7137 GB Notification: Performance of matching and sorting (n=202): time 0.01101/0.6605, allocations: 7.921 MB / 1.041 GB, free: 9.219 MB / 0.7137 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001359/0.6607, allocations: 401.7 kB / 1.041 GB, free: 8.77 MB / 0.7137 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007864/0.6615, allocations: 0.9136 MB / 1.042 GB, free: 8.238 MB / 0.7137 GB Notification: Performance of collectPreVariables (initialization): time 0.0001706/0.6616, allocations: 72.52 kB / 1.042 GB, free: 8.176 MB / 0.7137 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003446/0.662, allocations: 0.702 MB / 1.043 GB, free: 7.555 MB / 0.7137 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004605/0.6624, allocations: 0.7201 MB / 1.044 GB, free: 6.93 MB / 0.7137 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.00071/0.6631, allocations: 0.585 MB / 1.044 GB, free: 6.57 MB / 0.7137 GB Notification: Performance of setup shared object (initialization): time 6.963e-05/0.6632, allocations: 301.1 kB / 1.045 GB, free: 6.273 MB / 0.7137 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002125/0.6653, allocations: 1.567 MB / 1.046 GB, free: 5.23 MB / 0.7137 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002065/0.6674, allocations: 2.092 MB / 1.048 GB, free: 3.512 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.06509/0.7325, allocations: 24.76 MB / 1.072 GB, free: 1.746 MB / 0.7293 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.707e-05/0.7325, allocations: 6.438 kB / 1.072 GB, free: 1.742 MB / 0.7293 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.005571/0.7381, allocations: 4.13 MB / 1.076 GB, free: 13.49 MB / 0.7449 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001063/0.7382, allocations: 271.3 kB / 1.077 GB, free: 13.17 MB / 0.7449 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.698e-05/0.7382, allocations: 12 kB / 1.077 GB, free: 13.16 MB / 0.7449 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.964e-05/0.7382, allocations: 24.81 kB / 1.077 GB, free: 13.14 MB / 0.7449 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001908/0.7401, allocations: 0.8343 MB / 1.078 GB, free: 12.3 MB / 0.7449 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.761e-05/0.7402, allocations: 23.94 kB / 1.078 GB, free: 12.28 MB / 0.7449 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001434/0.7416, allocations: 119.9 kB / 1.078 GB, free: 12.16 MB / 0.7449 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002256/0.7418, allocations: 211.7 kB / 1.078 GB, free: 11.95 MB / 0.7449 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001091/0.7429, allocations: 0.645 MB / 1.079 GB, free: 11.29 MB / 0.7449 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002939/0.7432, allocations: 159 kB / 1.079 GB, free: 11.13 MB / 0.7449 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.004881/0.7481, allocations: 3.555 MB / 1.082 GB, free: 7.512 MB / 0.7449 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.097e-05/0.7481, allocations: 20 kB / 1.082 GB, free: 7.492 MB / 0.7449 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.921e-06/0.7481, allocations: 0 / 1.082 GB, free: 7.492 MB / 0.7449 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.271e-05/0.7481, allocations: 11.97 kB / 1.082 GB, free: 7.48 MB / 0.7449 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005932/0.7541, allocations: 4.565 MB / 1.087 GB, free: 2.875 MB / 0.7449 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.947e-06/0.7541, allocations: 0 / 1.087 GB, free: 2.875 MB / 0.7449 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001429/0.7555, allocations: 459.2 kB / 1.087 GB, free: 2.426 MB / 0.7449 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.666e-05/0.7555, allocations: 8 kB / 1.087 GB, free: 2.418 MB / 0.7449 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001656/0.7557, allocations: 107.8 kB / 1.087 GB, free: 2.312 MB / 0.7449 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.693e-06/0.7557, allocations: 8 kB / 1.087 GB, free: 2.305 MB / 0.7449 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.623e-06/0.7557, allocations: 0 / 1.087 GB, free: 2.305 MB / 0.7449 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.005805/0.7615, allocations: 4.733 MB / 1.092 GB, free: 13.48 MB / 0.7605 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006465/0.7621, allocations: 390.6 kB / 1.092 GB, free: 13.1 MB / 0.7605 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002413/0.7624, allocations: 59.89 kB / 1.092 GB, free: 13.04 MB / 0.7605 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000883/0.7632, allocations: 91.91 kB / 1.092 GB, free: 12.95 MB / 0.7605 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002383/0.7635, allocations: 161.7 kB / 1.093 GB, free: 12.79 MB / 0.7605 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001363/0.7636, allocations: 123.8 kB / 1.093 GB, free: 12.67 MB / 0.7605 GB Notification: Performance of sorting global known variables: time 0.000578/0.7642, allocations: 0.6545 MB / 1.093 GB, free: 12.01 MB / 0.7605 GB Notification: Performance of sort global known variables: time 9e-08/0.7642, allocations: 0 / 1.093 GB, free: 12.01 MB / 0.7605 GB Notification: Performance of remove unused functions: time 0.001268/0.7655, allocations: 0.6328 MB / 1.094 GB, free: 11.38 MB / 0.7605 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002555/0.7657, allocations: 207.6 kB / 1.094 GB, free: 11.16 MB / 0.7605 GB Notification: Performance of simCode: created initialization part: time 0.004074/0.7698, allocations: 3.64 MB / 1.098 GB, free: 7.336 MB / 0.7605 GB Notification: Performance of simCode: created event and clocks part: time 2.535e-06/0.7698, allocations: 4 kB / 1.098 GB, free: 7.332 MB / 0.7605 GB Notification: Performance of simCode: created simulation system equations: time 0.001693/0.7715, allocations: 1.581 MB / 1.099 GB, free: 5.676 MB / 0.7605 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001382/0.7729, allocations: 487.1 kB / 1.1 GB, free: 5.203 MB / 0.7605 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00667/0.7795, allocations: 6.487 MB / 1.106 GB, free: 14.67 MB / 0.7762 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005114/0.7801, allocations: 0.7689 MB / 1.107 GB, free: 13.87 MB / 0.7762 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001018/0.7811, allocations: 386.8 kB / 1.107 GB, free: 13.49 MB / 0.7762 GB Notification: Performance of SimCode: time 4.71e-07/0.7811, allocations: 0 / 1.107 GB, free: 13.49 MB / 0.7762 GB Notification: Performance of Templates: time 0.02941/0.8105, allocations: 33.59 MB / 1.14 GB, free: 11.91 MB / 0.8074 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.113059890922159]