Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001001/0.001001, allocations: 104.3 kB / 19.71 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001064/0.001064, allocations: 208.9 kB / 22.99 MB, free: 2.984 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.016/1.016, allocations: 230.6 MB / 256.8 MB, free: 9.609 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.678/1.678, allocations: 334.2 MB / 0.6323 GB, free: 7.961 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001449/0.001449, allocations: 75.89 kB / 0.8674 GB, free: 7.75 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1766/0.178, allocations: 112.8 MB / 0.9776 GB, free: 6.672 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen): time 0.003664/0.1817, allocations: 3.971 MB / 0.9814 GB, free: 2.684 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.001494/0.1832, allocations: 1.164 MB / 0.9826 GB, free: 1.516 MB / 0.6824 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.000142/0.1833, allocations: 7.938 kB / 0.9826 GB, free: 1.508 MB / 0.6824 GB Notification: Performance of NFTyping.typeComponents: time 0.0003802/0.1837, allocations: 143.1 kB / 0.9827 GB, free: 1.367 MB / 0.6824 GB Notification: Performance of NFTyping.typeBindings: time 0.0003534/0.184, allocations: 174.6 kB / 0.9829 GB, free: 1.195 MB / 0.6824 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004256/0.1845, allocations: 211.5 kB / 0.9831 GB, free: 0.9883 MB / 0.6824 GB Notification: Performance of NFFlatten.flatten: time 0.0004239/0.1849, allocations: 0.5635 MB / 0.9836 GB, free: 432 kB / 0.6824 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0001707/0.1851, allocations: 92.84 kB / 0.9837 GB, free: 336 kB / 0.6824 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001733/0.1852, allocations: 207.2 kB / 0.9839 GB, free: 128 kB / 0.6824 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000268/0.1855, allocations: 218.9 kB / 0.9841 GB, free: 15.91 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 4.341e-05/0.1855, allocations: 40 kB / 0.9842 GB, free: 15.87 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002024/0.1858, allocations: 179.4 kB / 0.9843 GB, free: 15.7 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 8.836e-05/0.1858, allocations: 99.62 kB / 0.9844 GB, free: 15.6 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0001416/0.186, allocations: 214.9 kB / 0.9846 GB, free: 15.39 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.0004812/0.1865, allocations: 0.6263 MB / 0.9853 GB, free: 14.76 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 5.079e-06/0.1865, allocations: 4 kB / 0.9853 GB, free: 14.75 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.753e-06/0.1865, allocations: 0 / 0.9853 GB, free: 14.75 MB / 0.698 GB Notification: Performance of Transformations before backend: time 8.206e-06/0.1865, allocations: 0 / 0.9853 GB, free: 14.75 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 81 * Number of variables: 81 Notification: Performance of Generate backend data structure: time 0.0009743/0.1875, allocations: 0.8893 MB / 0.9861 GB, free: 13.79 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.392e-05/0.1875, allocations: 10.11 kB / 0.9861 GB, free: 13.79 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001749/0.1877, allocations: 76.59 kB / 0.9862 GB, free: 13.71 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003067/0.188, allocations: 300.5 kB / 0.9865 GB, free: 13.39 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.056e-05/0.188, allocations: 25.03 kB / 0.9865 GB, free: 13.37 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 5.162e-05/0.188, allocations: 51.88 kB / 0.9866 GB, free: 13.32 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005371/0.1886, allocations: 0.5796 MB / 0.9871 GB, free: 12.7 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 1.874e-05/0.1886, allocations: 4 kB / 0.9871 GB, free: 12.7 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.395e-05/0.1886, allocations: 16 kB / 0.9872 GB, free: 12.68 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.844e-06/0.1886, allocations: 15.88 kB / 0.9872 GB, free: 12.66 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004514/0.1891, allocations: 0.5027 MB / 0.9877 GB, free: 12.13 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001041/0.1901, allocations: 0.968 MB / 0.9886 GB, free: 11.12 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.00053/0.1907, allocations: 0.5099 MB / 0.9891 GB, free: 10.57 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002732/0.1909, allocations: 397.9 kB / 0.9895 GB, free: 10.14 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 2.439e-05/0.1909, allocations: 8.312 kB / 0.9895 GB, free: 10.14 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.3717/0.5627, allocations: 0.679 MB / 0.9902 GB, free: 26.89 MB / 0.698 GB Notification: Performance of pre-optimization done (n=52): time 4.699e-06/0.5627, allocations: 1.406 kB / 0.9902 GB, free: 26.89 MB / 0.698 GB Notification: Performance of matching and sorting (n=55): time 0.003128/0.5658, allocations: 2.43 MB / 0.9925 GB, free: 25.9 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 7.769e-05/0.5659, allocations: 356.5 kB / 0.9929 GB, free: 25.5 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003651/0.5662, allocations: 394.9 kB / 0.9933 GB, free: 25.38 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 3.259e-05/0.5663, allocations: 40.55 kB / 0.9933 GB, free: 25.35 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001267/0.5664, allocations: 217.6 kB / 0.9935 GB, free: 25.24 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001003/0.5665, allocations: 191.6 kB / 0.9937 GB, free: 25.15 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001368/0.5666, allocations: 99.69 kB / 0.9938 GB, free: 25.13 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 7.424e-05/0.5667, allocations: 362.7 kB / 0.9941 GB, free: 24.82 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000398/0.5671, allocations: 456.7 kB / 0.9946 GB, free: 24.62 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004074/0.5675, allocations: 0.5703 MB / 0.9951 GB, free: 24.27 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001502/0.569, allocations: 1.808 MB / 0.9969 GB, free: 23.39 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.246e-06/0.569, allocations: 3.562 kB / 0.9969 GB, free: 23.39 MB / 0.698 GB Notification: Performance of matching and sorting (n=79) (initialization): time 0.001067/0.5701, allocations: 1.131 MB / 0.998 GB, free: 22.94 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 5.279e-05/0.5701, allocations: 176.6 kB / 0.9982 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.677e-06/0.5702, allocations: 3.5 kB / 0.9982 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.053e-05/0.5702, allocations: 3.781 kB / 0.9982 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003175/0.5705, allocations: 115.1 kB / 0.9983 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.067e-05/0.5705, allocations: 8.531 kB / 0.9983 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002128/0.5707, allocations: 27.06 kB / 0.9983 GB, free: 22.75 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.482e-05/0.5708, allocations: 67.19 kB / 0.9984 GB, free: 22.75 MB / 0.698 GB Warning: Assuming fixed start value for the following 14 variables: central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 16 * Number of states: 0 () * Number of discrete variables: 31 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,CYP2C19.status,SLC22A2.status,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (73): * Single equations (assignments): 67 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003054/0.5711, allocations: 404.9 kB / 0.9988 GB, free: 22.46 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.847e-05/0.5712, allocations: 59.91 kB / 0.9988 GB, free: 22.43 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 6.349e-05/0.5713, allocations: 53.19 kB / 0.9989 GB, free: 22.42 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.681e-06/0.5713, allocations: 5.25 kB / 0.9989 GB, free: 22.42 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 7.094e-06/0.5713, allocations: 2.781 kB / 0.9989 GB, free: 22.42 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.622e-06/0.5713, allocations: 3.062 kB / 0.9989 GB, free: 22.42 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007465/0.5788, allocations: 1.478 MB / 1 GB, free: 21.86 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.655e-06/0.5788, allocations: 1.188 kB / 1 GB, free: 21.86 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002822/0.5791, allocations: 84.11 kB / 1 GB, free: 21.85 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 3.617e-06/0.5791, allocations: 1.094 kB / 1 GB, free: 21.85 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.015e-05/0.5791, allocations: 19.28 kB / 1 GB, free: 21.85 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.379e-06/0.5791, allocations: 8.047 kB / 1 GB, free: 21.85 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.754e-06/0.5791, allocations: 3.938 kB / 1 GB, free: 21.85 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.007371/0.5865, allocations: 1.637 MB / 1.002 GB, free: 21.09 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001519/0.5866, allocations: 90.16 kB / 1.002 GB, free: 21.04 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 6.327e-05/0.5867, allocations: 21.81 kB / 1.002 GB, free: 21.03 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001734/0.5869, allocations: 25.89 kB / 1.002 GB, free: 21.02 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001022/0.587, allocations: 46.56 kB / 1.002 GB, free: 21.01 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.529e-05/0.587, allocations: 55.42 kB / 1.002 GB, free: 21 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.0002176/0.5872, allocations: 274.9 kB / 1.003 GB, free: 20.86 MB / 0.698 GB Notification: Performance of sort global known variables: time 9e-08/0.5872, allocations: 0 / 1.003 GB, free: 20.86 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0004576/0.5877, allocations: 144.9 kB / 1.003 GB, free: 20.85 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 9 (central.C,central.AUC,elim.MExc,periodicDose.TotalCumulativeMass,periodicDose.absorptionLumen.C,periodicDose.absorptionLumen.AUC,periodicDose.variableDose.TotalCumulativeMass,peripheral.C,peripheral.AUC) * Number of discrete variables: 20 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,central.Cmax,central.Cmin,central.rising,periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.rising,periodicDose.pulse.T_start,periodicDose.pulse.count,peripheral.Cmax,peripheral.Cmin,peripheral.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 18 (periodicDose.pulse.count,CYP2C19.status,SLC22A2.status,peripheral.Cmin,$whenCondition6,peripheral.Cmax,$whenCondition5,peripheral.rising,periodicDose.absorptionLumen.Cmin,$whenCondition4,periodicDose.absorptionLumen.Cmax,$whenCondition3,periodicDose.absorptionLumen.rising,central.Cmin,$whenCondition2,central.Cmax,$whenCondition1,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (44): * Single equations (assignments): 37 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002413/0.5879, allocations: 177.1 kB / 1.003 GB, free: 20.74 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.00105/0.589, allocations: 1.262 MB / 1.004 GB, free: 19.8 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 1.593e-06/0.589, allocations: 0.6875 kB / 1.004 GB, free: 19.8 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.006529/0.5955, allocations: 0.7256 MB / 1.005 GB, free: 19.22 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0005891/0.5961, allocations: 129.9 kB / 1.005 GB, free: 19.18 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001942/0.598, allocations: 1.705 MB / 1.007 GB, free: 18.08 MB / 0.698 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002419/0.5983, allocations: 251.9 kB / 1.007 GB, free: 17.98 MB / 0.698 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.006091/0.6044, allocations: 39.88 kB / 1.007 GB, free: 17.97 MB / 0.698 GB Notification: Performance of SimCode: time 6.41e-07/0.6044, allocations: 0 / 1.007 GB, free: 17.97 MB / 0.698 GB Notification: Performance of Templates: time 0.02892/0.6333, allocations: 6.716 MB / 1.013 GB, free: 17.18 MB / 0.698 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:259:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 259 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenInitialize.cpp:263:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 263 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:159:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 159 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp46); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:163:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 163 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp48); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:188:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 188 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp50); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:307:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 307 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp52); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_Ibuprofen.h:312:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 312 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_2C_IbuprofenCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.824310905998573]