Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001004/0.001004, allocations: 100.4 kB / 19.7 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001054/0.001054, allocations: 215.3 kB / 23 MB, free: 2.945 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9845/0.9845, allocations: 230.6 MB / 256.8 MB, free: 9.613 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.783/1.783, allocations: 334.3 MB / 0.6323 GB, free: 7.918 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium,tolerance=1e-06,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.002479/0.002479, allocations: 63.91 kB / 0.8671 GB, free: 8.109 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1738/0.1763, allocations: 112.8 MB / 0.9772 GB, free: 7.027 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium): time 0.00275/0.1791, allocations: 2.737 MB / 0.9799 GB, free: 4.277 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.001248/0.1803, allocations: 1.008 MB / 0.9809 GB, free: 3.266 MB / 0.6824 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001112/0.1804, allocations: 8 kB / 0.9809 GB, free: 3.258 MB / 0.6824 GB Notification: Performance of NFTyping.typeComponents: time 0.0003594/0.1808, allocations: 131.2 kB / 0.981 GB, free: 3.129 MB / 0.6824 GB Notification: Performance of NFTyping.typeBindings: time 0.0001416/0.1809, allocations: 107.1 kB / 0.9811 GB, free: 3.023 MB / 0.6824 GB Notification: Performance of NFTyping.typeClassSections: time 0.0003889/0.1813, allocations: 179.6 kB / 0.9813 GB, free: 2.848 MB / 0.6824 GB Notification: Performance of NFFlatten.flatten: time 0.0003044/0.1816, allocations: 402.3 kB / 0.9817 GB, free: 2.453 MB / 0.6824 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0001366/0.1818, allocations: 66 kB / 0.9817 GB, free: 2.387 MB / 0.6824 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0001262/0.1819, allocations: 147.4 kB / 0.9819 GB, free: 2.242 MB / 0.6824 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0001584/0.182, allocations: 147.2 kB / 0.982 GB, free: 2.098 MB / 0.6824 GB Notification: Performance of NFPackage.collectConstants: time 3.239e-05/0.1821, allocations: 32 kB / 0.982 GB, free: 2.066 MB / 0.6824 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001862/0.1823, allocations: 175.4 kB / 0.9822 GB, free: 1.895 MB / 0.6824 GB Notification: Performance of NFScalarize.scalarize: time 0.0003271/0.1826, allocations: 87.56 kB / 0.9823 GB, free: 1.809 MB / 0.6824 GB Notification: Performance of NFVerifyModel.verify: time 0.0001091/0.1827, allocations: 147.3 kB / 0.9824 GB, free: 1.664 MB / 0.6824 GB Notification: Performance of NFConvertDAE.convert: time 0.000396/0.1831, allocations: 0.5019 MB / 0.9829 GB, free: 1.16 MB / 0.6824 GB Notification: Performance of FrontEnd - DAE generated: time 4.769e-06/0.1831, allocations: 0 / 0.9829 GB, free: 1.16 MB / 0.6824 GB Notification: Performance of FrontEnd: time 2.043e-06/0.1831, allocations: 4 kB / 0.9829 GB, free: 1.156 MB / 0.6824 GB Notification: Performance of Transformations before backend: time 6.823e-06/0.1831, allocations: 4 kB / 0.9829 GB, free: 1.152 MB / 0.6824 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 58 * Number of variables: 58 Notification: Performance of Generate backend data structure: time 0.0008006/0.1839, allocations: 0.7242 MB / 0.9836 GB, free: 376 kB / 0.6824 GB Notification: Performance of prepare preOptimizeDAE: time 3.75e-05/0.1839, allocations: 14.05 kB / 0.9836 GB, free: 364 kB / 0.6824 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001625/0.1841, allocations: 60.59 kB / 0.9837 GB, free: 304 kB / 0.6824 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002385/0.1843, allocations: 242.5 kB / 0.9839 GB, free: 36 kB / 0.6824 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.568e-05/0.1844, allocations: 20.81 kB / 0.984 GB, free: 16 kB / 0.6824 GB Notification: Performance of preOpt expandDerOperator (simulation): time 5.001e-05/0.1844, allocations: 32.17 kB / 0.984 GB, free: 15.98 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004117/0.1848, allocations: 466.2 kB / 0.9844 GB, free: 15.5 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 1.542e-05/0.1848, allocations: 3.953 kB / 0.9844 GB, free: 15.5 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.012e-05/0.1849, allocations: 11.98 kB / 0.9844 GB, free: 15.48 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.971e-06/0.1849, allocations: 4 kB / 0.9844 GB, free: 15.48 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003587/0.1852, allocations: 424.3 kB / 0.9849 GB, free: 15.04 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006587/0.1859, allocations: 0.584 MB / 0.9854 GB, free: 14.43 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0004729/0.1864, allocations: 455.8 kB / 0.9859 GB, free: 13.95 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000228/0.1866, allocations: 331.8 kB / 0.9862 GB, free: 13.59 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 1.844e-05/0.1866, allocations: 4 kB / 0.9862 GB, free: 13.59 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003769/0.187, allocations: 0.543 MB / 0.9867 GB, free: 12.98 MB / 0.698 GB Notification: Performance of pre-optimization done (n=39): time 1.884e-06/0.187, allocations: 4 kB / 0.9867 GB, free: 12.98 MB / 0.698 GB Notification: Performance of matching and sorting (n=41): time 0.001728/0.1887, allocations: 2.055 MB / 0.9887 GB, free: 10.77 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.001e-05/0.1888, allocations: 273 kB / 0.989 GB, free: 10.45 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004401/0.1892, allocations: 308.6 kB / 0.9893 GB, free: 10.14 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 2.519e-05/0.1892, allocations: 37.7 kB / 0.9893 GB, free: 10.1 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 8.309e-05/0.1893, allocations: 180.7 kB / 0.9895 GB, free: 9.914 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 6.653e-05/0.1894, allocations: 131 kB / 0.9896 GB, free: 9.785 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 7.744e-05/0.1895, allocations: 81.69 kB / 0.9897 GB, free: 9.699 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 8.144e-05/0.1896, allocations: 350.7 kB / 0.99 GB, free: 9.348 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002665/0.1898, allocations: 386.6 kB / 0.9904 GB, free: 8.938 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002956/0.1901, allocations: 483.2 kB / 0.9908 GB, free: 8.398 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.371/0.5612, allocations: 1.523 MB / 0.9923 GB, free: 26.33 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.541e-06/0.5612, allocations: 2 kB / 0.9923 GB, free: 26.33 MB / 0.698 GB Notification: Performance of matching and sorting (n=57) (initialization): time 0.0008519/0.562, allocations: 0.9363 MB / 0.9933 GB, free: 25.97 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 5.816e-05/0.5621, allocations: 146.7 kB / 0.9934 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.678e-06/0.5621, allocations: 6.125 kB / 0.9934 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.31e-05/0.5621, allocations: 6.062 kB / 0.9934 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001874/0.5623, allocations: 78.36 kB / 0.9935 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.628e-06/0.5623, allocations: 7.562 kB / 0.9935 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001565/0.5625, allocations: 29.31 kB / 0.9935 GB, free: 25.82 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.744e-05/0.5625, allocations: 52.88 kB / 0.9936 GB, free: 25.82 MB / 0.698 GB Warning: Assuming fixed start value for the following 10 variables: dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real central.rising:DISCRETE(fixed = true protected = true ) type: Boolean dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 10 * Number of states: 0 () * Number of discrete variables: 23 ($PRE.dose.absorptionLumen.Cmin,dose.absorptionLumen.Cmin,$PRE.dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.central.rising,$PRE.dose.pulse.count,$PRE.dose.pulse.T_start,$PRE.dose.absorptionLumen.rising,CYP2C19.status,SLC22A2.status,central.rising,dose.pulse.count,dose.pulse.T_start,dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (52): * Single equations (assignments): 47 * Array equations: 0 * Algorithm blocks: 5 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0002804/0.5628, allocations: 345.4 kB / 0.9939 GB, free: 25.58 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 7.112e-05/0.5629, allocations: 40.44 kB / 0.9939 GB, free: 25.58 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.185e-05/0.5629, allocations: 42.48 kB / 0.994 GB, free: 25.57 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.19e-06/0.5629, allocations: 1.906 kB / 0.994 GB, free: 25.57 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 6.332e-06/0.563, allocations: 0 / 0.994 GB, free: 25.57 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.873e-06/0.563, allocations: 6.375 kB / 0.994 GB, free: 25.57 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001027/0.564, allocations: 1.214 MB / 0.9952 GB, free: 25.09 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.757e-06/0.564, allocations: 0.75 kB / 0.9952 GB, free: 25.09 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001889/0.5642, allocations: 64.03 kB / 0.9952 GB, free: 25.09 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 4.408e-06/0.5642, allocations: 0.6562 kB / 0.9952 GB, free: 25.09 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.482e-05/0.5642, allocations: 15.91 kB / 0.9952 GB, free: 25.09 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.016e-06/0.5642, allocations: 3.938 kB / 0.9952 GB, free: 25.08 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.365e-06/0.5642, allocations: 11.38 kB / 0.9953 GB, free: 25.08 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0009979/0.5652, allocations: 1.395 MB / 0.9966 GB, free: 24.55 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0001088/0.5653, allocations: 75.8 kB / 0.9967 GB, free: 24.55 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.336e-05/0.5654, allocations: 11.47 kB / 0.9967 GB, free: 24.55 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001151/0.5655, allocations: 18.11 kB / 0.9967 GB, free: 24.55 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 9.247e-05/0.5656, allocations: 40.67 kB / 0.9968 GB, free: 24.55 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.882e-05/0.5656, allocations: 51.17 kB / 0.9968 GB, free: 24.55 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.000144/0.5658, allocations: 221.1 kB / 0.997 GB, free: 24.47 MB / 0.698 GB Notification: Performance of sort global known variables: time 8e-08/0.5658, allocations: 4.562 kB / 0.997 GB, free: 24.46 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0003152/0.5661, allocations: 104.4 kB / 0.9971 GB, free: 24.46 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 7 (dose.TotalCumulativeMass,dose.absorptionLumen.C,dose.absorptionLumen.AUC,dose.variableDose.TotalCumulativeMass,central.C,central.AUC,elim.MExc) * Number of discrete variables: 15 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,dose.absorptionLumen.Cmax,dose.absorptionLumen.Cmin,dose.absorptionLumen.rising,dose.pulse.T_start,dose.pulse.count,central.Cmax,central.Cmin,central.rising,SLC22A2.status,CYP2C19.status) * Number of discrete states: 13 (dose.pulse.count,SLC22A2.status,CYP2C19.status,dose.absorptionLumen.Cmin,$whenCondition5,dose.absorptionLumen.Cmax,$whenCondition4,dose.absorptionLumen.rising,central.Cmin,$whenCondition3,central.Cmax,$whenCondition2,central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (33): * Single equations (assignments): 27 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 2 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002257/0.5663, allocations: 159.4 kB / 0.9973 GB, free: 24.38 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.0007187/0.567, allocations: 1.052 MB / 0.9983 GB, free: 23.77 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 1.844e-06/0.567, allocations: 1.562 kB / 0.9983 GB, free: 23.77 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.0003164/0.5673, allocations: 0.6007 MB / 0.9989 GB, free: 23.38 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003741/0.5677, allocations: 82.27 kB / 0.999 GB, free: 23.38 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001474/0.5692, allocations: 1.365 MB / 1 GB, free: 22.67 MB / 0.698 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000168/0.5694, allocations: 205.7 kB / 1 GB, free: 22.58 MB / 0.698 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 6.658e-05/0.5694, allocations: 32.52 kB / 1.001 GB, free: 22.57 MB / 0.698 GB Notification: Performance of SimCode: time 5.81e-07/0.5694, allocations: 1.094 kB / 1.001 GB, free: 22.57 MB / 0.698 GB Notification: Performance of Templates: time 0.008818/0.5783, allocations: 5.072 MB / 1.005 GB, free: 22.07 MB / 0.698 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:192:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 192 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:196:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 196 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:230:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 230 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumInitialize.cpp:234:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 234 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:330:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 330 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp35); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:105: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_SLC22A2_P_g_P_ph_P_intermediate_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:266:36: note: '_SLC22A2_P_g_P_ph_P_intermediate_' declared here 266 | StatArrayDim1 _SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:334:167: error: use of undeclared identifier 'CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_CYP2C19_P_g_P_ph_P_poor_'? 334 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_CYP2C19_P_g_P_ph_P_poor_, CYP2C19_P_g_P_ph_P_intermediate_, _CYP2C19_P_g_P_ph_P_rapid_, CYP2C19_P_g_P_ph_P_ultra_, _CYP2C19_P_g_P_ph_P_CLscale_, _CYP2C19_P_g_P_ph_P_Fscale_,tmp37); | ^~~~~~~~~~~~~~~~~~~~~~~~~ | _CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.h:261:36: note: '_CYP2C19_P_g_P_ph_P_poor_' declared here 261 | StatArrayDim1 _CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.cpp:33: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:368:163: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_ultra_' 368 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp39); | ^~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:75: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_poor_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_Lithium.cpp:372:136: error: use of undeclared identifier 'SLC22A2_P_g_P_ph_P_rapid_' 372 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(SLC22A2_P_g_P_ph_P_poor_, _SLC22A2_P_g_P_ph_P_intermediate_, SLC22A2_P_g_P_ph_P_rapid_, SLC22A2_P_g_P_ph_P_ultra_, _SLC22A2_P_g_P_ph_P_CLscale_, _SLC22A2_P_g_P_ph_P_Fscale_,tmp41); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.Patient_PKPG_1C_LithiumCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 5.769237207947299]